Wall clock time and date at job start Mon Mar 30 2020 06:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31523 * 119.99908 * 179.72112 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 359.71709 * 6 4 2 9 9 H 1.48500 * 109.47210 * 90.00069 * 8 6 4 10 10 H 1.48504 * 109.47424 * 210.00300 * 8 6 4 11 11 H 1.48502 * 109.46888 * 330.00390 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 N 1.30223 * 126.10100 * 299.69092 * 12 2 1 14 14 N 1.39874 * 110.08828 * 179.84107 * 13 12 2 15 15 C 1.46501 * 125.46475 * 180.14862 * 14 13 12 16 16 C 1.37049 * 109.06850 * 0.43456 * 14 13 12 17 17 C 1.39282 * 133.79137 * 179.75607 * 16 14 13 18 18 C 1.37787 * 119.72015 * 179.97438 * 17 16 14 19 19 F 1.35096 * 119.69452 * 179.97438 * 18 17 16 20 20 C 1.39204 * 120.61209 * 0.02562 * 18 17 16 21 21 C 1.36392 * 120.60795 * 359.97438 * 20 18 17 22 22 C 1.39945 * 119.81599 * 0.02562 * 21 20 18 23 23 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 24 24 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 25 25 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 26 26 H 0.96995 * 120.00181 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47201 * 270.32775 * 15 14 13 28 28 H 1.09003 * 109.46967 * 30.32976 * 15 14 13 29 29 H 1.09003 * 109.46932 * 150.32962 * 15 14 13 30 30 H 1.07999 * 120.14053 * 0.02562 * 17 16 14 31 31 H 1.08001 * 119.68984 * 179.97438 * 20 18 17 32 32 H 1.08008 * 120.09027 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 2.1285 -0.8661 3.5564 8 14 0.6207 1.2760 2.6542 9 1 -0.8074 0.8707 2.6929 10 1 0.9674 1.9881 3.9104 11 1 0.8484 2.1766 1.4956 12 6 2.0323 -0.7103 -1.2306 13 7 1.7967 -1.9504 -1.5506 14 7 2.4221 -2.2609 -2.7626 15 6 2.3746 -3.5618 -3.4348 16 6 3.0916 -1.1549 -3.2172 17 6 3.8718 -0.8949 -4.3413 18 6 4.4212 0.3564 -4.5170 19 9 5.1783 0.6079 -5.6072 20 6 4.2043 1.3636 -3.5808 21 6 3.4435 1.1300 -2.4732 22 6 2.8750 -0.1330 -2.2731 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8912 -0.5369 4.4374 27 1 3.2017 -4.1807 -3.0872 28 1 1.4301 -4.0551 -3.2052 29 1 2.4566 -3.4173 -4.5121 30 1 4.0447 -1.6706 -5.0727 31 1 4.6425 2.3389 -3.7332 32 1 3.2810 1.9175 -1.7520 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259990820.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:47 Heat of formation + Delta-G solvation = 43.212641 kcal Electronic energy + Delta-G solvation = -17528.384283 eV Core-core repulsion = 14597.973377 eV Total energy + Delta-G solvation = -2930.410906 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.84819 -40.89380 -36.70031 -35.05603 -32.61187 -30.91553 -30.31708 -29.08725 -26.12945 -25.07437 -23.10887 -22.05700 -21.65172 -18.91112 -17.30163 -16.88585 -16.52928 -16.13746 -15.63966 -15.08413 -14.88086 -14.71660 -13.91276 -13.42990 -13.13481 -13.01275 -12.74600 -12.55924 -12.37887 -12.19361 -11.51612 -11.25564 -10.96806 -10.94510 -10.60595 -10.23539 -10.02048 -9.65710 -9.43893 -9.11668 -8.60156 -8.21799 -7.58116 -6.10344 -4.11069 1.05591 1.58970 2.71939 2.98494 3.25513 3.33710 3.37510 3.88073 4.32474 4.36229 4.70484 4.77225 4.98071 5.12545 5.22982 5.31488 5.41526 5.42537 5.57325 5.81915 5.97763 6.06217 6.19703 6.30864 6.35002 6.49562 6.59277 6.81820 6.91675 7.07327 7.26035 7.37783 7.60047 8.24064 8.46366 8.94273 9.48059 11.02608 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.027608 B = 0.006749 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.971718 B = 4147.722235 C = 4718.961976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.080 3.920 3 H 0.050 0.950 4 C -0.507 4.507 5 H 0.077 0.923 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.886 3.114 9 H -0.277 1.277 10 H -0.296 1.296 11 H -0.264 1.264 12 C 0.162 3.838 13 N -0.247 5.247 14 N -0.420 5.420 15 C 0.115 3.885 16 C 0.149 3.851 17 C -0.189 4.189 18 C 0.140 3.860 19 F -0.141 7.141 20 C -0.206 4.206 21 C 0.002 3.998 22 C -0.184 4.184 23 H 0.046 0.954 24 H 0.031 0.969 25 H 0.060 0.940 26 H 0.265 0.735 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.131 0.869 31 H 0.135 0.865 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.369 1.760 -15.233 15.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.059 3.941 3 H 0.068 0.932 4 C -0.546 4.546 5 H 0.095 0.905 6 C -0.129 4.129 7 N -0.534 5.534 8 Si 0.716 3.284 9 H -0.204 1.204 10 H -0.223 1.223 11 H -0.189 1.189 12 C -0.016 4.016 13 N -0.057 5.057 14 N -0.205 5.205 15 C -0.027 4.027 16 C 0.032 3.968 17 C -0.212 4.212 18 C 0.118 3.882 19 F -0.120 7.120 20 C -0.226 4.226 21 C -0.018 4.018 22 C -0.193 4.193 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.149 0.851 31 H 0.153 0.847 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.789 0.437 -14.822 14.849 hybrid contribution 0.054 1.239 -0.289 1.273 sum 0.843 1.676 -15.110 15.226 Atomic orbital electron populations 1.22143 0.97499 1.01643 0.98870 1.17943 0.92294 0.95410 0.88413 0.93230 1.20810 1.32392 1.13694 0.87664 0.90482 1.24952 0.95653 0.96687 0.95631 1.69881 1.45361 1.40157 0.97952 0.86871 0.80714 0.83635 0.77147 1.20425 1.22326 1.18914 1.24071 0.92907 0.89882 0.94719 1.76852 1.17161 1.15966 0.95710 1.48350 1.44076 1.09341 1.18774 1.21628 1.03733 0.81419 0.95936 1.18406 0.94991 0.88610 0.94776 1.19645 1.05141 0.97124 0.99300 1.17258 0.92844 0.93683 0.84382 1.91471 1.73587 1.94726 1.52202 1.20496 1.06231 0.99594 0.96311 1.20257 0.91496 0.94917 0.95145 1.20085 1.06542 0.95266 0.97370 0.93535 0.94951 0.92131 0.92472 0.91601 0.89545 0.90452 0.85125 0.84713 0.84302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.65 37.16 0.32 -2.78 16 2 C 0.08 1.87 2.33 -92.92 -0.22 1.65 16 3 H 0.05 1.11 7.20 -51.93 -0.37 0.73 16 4 C -0.51 -14.11 9.13 -34.44 -0.31 -14.42 16 5 H 0.08 2.40 7.98 -52.49 -0.42 1.98 16 6 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 7 N -0.90 -27.03 13.96 55.43 0.77 -26.25 16 8 Si 0.89 21.08 24.37 -169.99 -4.14 16.94 16 9 H -0.28 -6.45 6.86 56.52 0.39 -6.07 16 10 H -0.30 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 12 C 0.16 3.54 5.88 -80.18 -0.47 3.07 16 13 N -0.25 -5.34 12.40 34.84 0.43 -4.91 16 14 N -0.42 -7.47 4.05 -65.47 -0.27 -7.73 16 15 C 0.11 1.41 11.40 59.85 0.68 2.09 16 16 C 0.15 2.59 6.87 -84.18 -0.58 2.01 16 17 C -0.19 -2.74 9.98 -39.36 -0.39 -3.13 16 18 C 0.14 1.99 7.28 -39.39 -0.29 1.70 16 19 F -0.14 -1.91 17.25 2.25 0.04 -1.87 16 20 C -0.21 -2.84 9.94 -39.89 -0.40 -3.24 16 21 C 0.00 0.04 10.05 -39.61 -0.40 -0.36 16 22 C -0.18 -3.49 6.32 -105.20 -0.67 -4.15 16 23 H 0.05 1.02 3.25 -51.93 -0.17 0.85 16 24 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 26 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.08 0.72 8.13 -51.93 -0.42 0.30 16 30 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 32 H 0.14 1.95 8.06 -52.48 -0.42 1.53 16 LS Contribution 277.45 15.07 4.18 4.18 Total: -1.00 -31.43 277.45 -5.32 -36.76 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -3.52 Total: -1.51 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -2.81 Total: -15.61 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.94 Total: -38.89 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.14 Total: 16.94 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.43 -5.32 -36.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259990820.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.968 kcal (2) G-P(sol) polarization free energy of solvation -31.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds