Wall clock time and date at job start Mon Mar 30 2020 06:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31523 * 119.99908 * 179.72112 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 359.71709 * 6 4 2 9 9 H 1.48500 * 109.47210 * 90.00069 * 8 6 4 10 10 H 1.48504 * 109.47424 * 210.00300 * 8 6 4 11 11 H 1.48502 * 109.46888 * 330.00390 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 N 1.30223 * 126.10100 * 299.69092 * 12 2 1 14 14 N 1.39874 * 110.08828 * 179.84107 * 13 12 2 15 15 C 1.46501 * 125.46475 * 180.14862 * 14 13 12 16 16 C 1.37049 * 109.06850 * 0.43456 * 14 13 12 17 17 C 1.39282 * 133.79137 * 179.75607 * 16 14 13 18 18 C 1.37787 * 119.72015 * 179.97438 * 17 16 14 19 19 F 1.35096 * 119.69452 * 179.97438 * 18 17 16 20 20 C 1.39204 * 120.61209 * 0.02562 * 18 17 16 21 21 C 1.36392 * 120.60795 * 359.97438 * 20 18 17 22 22 C 1.39945 * 119.81599 * 0.02562 * 21 20 18 23 23 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 24 24 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 25 25 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 26 26 H 0.96995 * 120.00181 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47201 * 270.32775 * 15 14 13 28 28 H 1.09003 * 109.46967 * 30.32976 * 15 14 13 29 29 H 1.09003 * 109.46932 * 150.32962 * 15 14 13 30 30 H 1.07999 * 120.14053 * 0.02562 * 17 16 14 31 31 H 1.08001 * 119.68984 * 179.97438 * 20 18 17 32 32 H 1.08008 * 120.09027 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 2.1285 -0.8661 3.5564 8 14 0.6207 1.2760 2.6542 9 1 -0.8074 0.8707 2.6929 10 1 0.9674 1.9881 3.9104 11 1 0.8484 2.1766 1.4956 12 6 2.0323 -0.7103 -1.2306 13 7 1.7967 -1.9504 -1.5506 14 7 2.4221 -2.2609 -2.7626 15 6 2.3746 -3.5618 -3.4348 16 6 3.0916 -1.1549 -3.2172 17 6 3.8718 -0.8949 -4.3413 18 6 4.4212 0.3564 -4.5170 19 9 5.1783 0.6079 -5.6072 20 6 4.2043 1.3636 -3.5808 21 6 3.4435 1.1300 -2.4732 22 6 2.8750 -0.1330 -2.2731 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8912 -0.5369 4.4374 27 1 3.2017 -4.1807 -3.0872 28 1 1.4301 -4.0551 -3.2052 29 1 2.4566 -3.4173 -4.5121 30 1 4.0447 -1.6706 -5.0727 31 1 4.6425 2.3389 -3.7332 32 1 3.2810 1.9175 -1.7520 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259990820.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:46 Heat of formation + Delta-G solvation = 23.080332 kcal Electronic energy + Delta-G solvation = -17529.257286 eV Core-core repulsion = 14597.973377 eV Total energy + Delta-G solvation = -2931.283908 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.93766 -42.22367 -37.95100 -36.74287 -34.34731 -32.68394 -31.45503 -30.37474 -27.40829 -27.05605 -24.51145 -23.50321 -22.92404 -20.40414 -18.92951 -18.29550 -18.03041 -17.37882 -16.87386 -16.67561 -16.15105 -16.00189 -15.17861 -15.03346 -14.82695 -14.28655 -14.14032 -13.96311 -13.77892 -13.39861 -13.10746 -12.94390 -12.56659 -12.20359 -12.15750 -11.94003 -11.65330 -11.32746 -11.18284 -10.83862 -10.69106 -9.50409 -8.84995 -8.27284 -6.33730 -0.17416 0.40616 1.37350 1.42000 1.49232 1.53323 1.53862 2.35900 2.63662 3.07034 3.17614 3.50883 3.59281 3.68810 4.06340 4.24979 4.31248 4.40531 4.45432 4.54110 4.63682 4.70062 4.77224 4.83620 4.97158 5.07423 5.10192 5.29641 5.45911 5.58965 5.62767 5.83893 6.12684 6.27425 6.68945 6.80735 7.29577 8.89930 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.027608 B = 0.006749 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.971718 B = 4147.722235 C = 4718.961976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.081 3.919 3 H 0.064 0.936 4 C -0.510 4.510 5 H 0.021 0.979 6 C 0.013 3.987 7 N -0.950 5.950 8 Si 0.952 3.048 9 H -0.267 1.267 10 H -0.297 1.297 11 H -0.230 1.230 12 C 0.134 3.866 13 N -0.284 5.284 14 N -0.421 5.421 15 C 0.103 3.897 16 C 0.136 3.864 17 C -0.182 4.182 18 C 0.144 3.856 19 F -0.133 7.133 20 C -0.191 4.191 21 C -0.009 4.009 22 C -0.213 4.213 23 H 0.045 0.955 24 H 0.064 0.936 25 H 0.045 0.955 26 H 0.267 0.733 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.160 0.840 31 H 0.167 0.833 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.266 3.707 -17.865 18.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.060 3.940 3 H 0.081 0.919 4 C -0.549 4.549 5 H 0.040 0.960 6 C -0.184 4.184 7 N -0.590 5.590 8 Si 0.778 3.222 9 H -0.193 1.193 10 H -0.225 1.225 11 H -0.153 1.153 12 C -0.043 4.043 13 N -0.096 5.096 14 N -0.208 5.208 15 C -0.037 4.037 16 C 0.020 3.980 17 C -0.205 4.205 18 C 0.122 3.878 19 F -0.112 7.112 20 C -0.211 4.211 21 C -0.029 4.029 22 C -0.221 4.221 23 H 0.063 0.937 24 H 0.083 0.917 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.108 0.892 29 H 0.132 0.868 30 H 0.177 0.823 31 H 0.185 0.815 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.691 2.379 -17.495 17.670 hybrid contribution 0.227 0.506 0.399 0.683 sum 0.918 2.885 -17.097 17.363 Atomic orbital electron populations 1.22036 0.96068 1.01218 1.00264 1.17817 0.93444 0.95541 0.87180 0.91861 1.20965 1.31431 1.12240 0.90232 0.96032 1.25906 0.97186 1.00417 0.94884 1.70053 1.47597 1.42635 0.98720 0.85802 0.78757 0.79575 0.78115 1.19273 1.22468 1.15342 1.23864 0.94678 0.90518 0.95279 1.76670 1.18575 1.16432 0.97948 1.48624 1.43544 1.10947 1.17703 1.22034 1.04350 0.79626 0.97649 1.18681 0.95693 0.88123 0.95524 1.19888 1.03825 0.98138 0.98682 1.17349 0.92342 0.93645 0.84469 1.91501 1.73255 1.94638 1.51773 1.20818 1.04536 1.00825 0.94907 1.20472 0.91878 0.94217 0.96326 1.20282 1.07375 0.97175 0.97237 0.93667 0.91717 0.93622 0.92367 0.90799 0.89180 0.86834 0.82263 0.81528 0.82950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.81 8.65 71.98 0.62 -5.18 16 2 C 0.08 3.77 2.33 -12.29 -0.03 3.74 16 3 H 0.06 2.74 7.20 -2.38 -0.02 2.72 16 4 C -0.51 -29.57 9.13 25.60 0.23 -29.34 16 5 H 0.02 1.43 7.98 -2.91 -0.02 1.41 16 6 C 0.01 0.76 5.45 84.65 0.46 1.22 16 7 N -0.95 -59.74 13.96 21.45 0.30 -59.44 16 8 Si 0.95 43.13 24.37 68.60 1.67 44.80 16 9 H -0.27 -11.57 6.86 99.48 0.68 -10.89 16 10 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 11 H -0.23 -9.13 6.54 99.48 0.65 -8.48 16 12 C 0.13 5.91 5.88 44.80 0.26 6.18 16 13 N -0.28 -12.63 12.40 -43.68 -0.54 -13.17 16 14 N -0.42 -14.78 4.05 -361.05 -1.46 -16.24 16 15 C 0.10 2.39 11.40 127.77 1.46 3.85 16 16 C 0.14 4.55 6.87 39.21 0.27 4.82 16 17 C -0.18 -4.73 9.98 22.41 0.22 -4.51 16 18 C 0.14 3.56 7.28 22.40 0.16 3.73 16 19 F -0.13 -3.06 17.25 44.97 0.78 -2.28 16 20 C -0.19 -4.59 9.94 22.07 0.22 -4.37 16 21 C -0.01 -0.25 10.05 22.25 0.22 -0.03 16 22 C -0.21 -7.87 6.32 -20.24 -0.13 -8.00 16 23 H 0.04 1.88 3.25 -2.38 -0.01 1.87 16 24 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 25 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 27 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.11 1.77 8.13 -2.39 -0.02 1.75 16 30 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 31 H 0.17 2.92 8.06 -2.91 -0.02 2.89 16 32 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -71.81 277.45 5.78 -66.04 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: 1.05 Total: 8.21 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: 3.98 Total: -27.91 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -1.70 Total: -88.86 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.78 Total: -2.28 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.67 Total: 44.80 kcal Total: -71.81 5.78 -66.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259990820.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.116 kcal (2) G-P(sol) polarization free energy of solvation -71.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds