Wall clock time and date at job start Mon Mar 30 2020 05:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38383 * 119.83651 * 2 1 4 4 C 1.37879 * 120.19970 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.06209 * 179.97438 * 4 3 2 6 6 C 1.50706 * 115.55178 * 114.14555 * 5 4 3 7 7 H 1.07993 * 119.99956 * 144.45477 * 6 5 4 8 8 C 1.37880 * 119.99849 * 324.45546 * 6 5 4 9 9 N 1.31514 * 119.99958 * 351.66653 * 8 6 5 10 10 Si 1.86801 * 119.99824 * 171.66696 * 8 6 5 11 11 H 1.48497 * 109.47161 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.46748 * 120.00081 * 10 8 6 13 13 H 1.48500 * 109.46839 * 239.99735 * 10 8 6 14 14 C 1.53007 * 117.50114 * 328.47469 * 5 4 3 15 15 C 1.53001 * 117.49988 * 259.81516 * 5 4 3 16 16 C 1.39869 * 119.87450 * 359.97008 * 4 3 2 17 17 C 1.47171 * 120.15890 * 180.02562 * 16 4 3 18 18 O 1.21256 * 119.99869 * 353.89255 * 17 16 4 19 19 C 1.39806 * 119.68516 * 0.02562 * 16 4 3 20 20 C 1.38142 * 119.79316 * 359.74561 * 19 16 4 21 21 F 1.35101 * 119.94013 * 180.27053 * 20 19 16 22 22 H 1.09001 * 109.47330 * 90.00122 * 1 2 3 23 23 H 1.08999 * 109.47038 * 210.00199 * 1 2 3 24 24 H 1.09000 * 109.46879 * 330.00170 * 1 2 3 25 25 H 1.07996 * 119.90665 * 359.97438 * 3 2 1 26 26 H 0.96998 * 120.00173 * 175.02286 * 9 8 6 27 27 H 1.09000 * 117.49013 * 0.02562 * 14 5 4 28 28 H 1.08995 * 117.50051 * 145.02154 * 14 5 4 29 29 H 1.08995 * 117.49864 * 214.98328 * 15 5 4 30 30 H 1.09005 * 117.49529 * 359.97438 * 15 5 4 31 31 H 1.08000 * 120.00464 * 173.88606 * 17 16 4 32 32 H 1.07998 * 120.10225 * 179.97438 * 19 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.2004 0.0000 4 6 3.5743 1.2091 -0.0005 5 6 4.3209 2.5181 -0.0011 6 6 5.1265 2.8075 1.2392 7 1 6.0695 3.3281 1.1613 8 6 4.6597 2.4075 2.4734 9 7 3.4429 1.9225 2.5905 10 14 5.7556 2.5546 3.9790 11 1 7.0677 3.1256 3.5823 12 1 5.1091 3.4445 4.9767 13 1 5.9612 1.2099 4.5748 14 6 3.6657 3.7049 -0.7108 15 6 4.8788 3.0126 -1.3372 16 6 4.2786 0.0007 -0.0004 17 6 5.7503 0.0028 -0.0004 18 8 6.3552 1.0478 -0.1122 19 6 3.5780 -1.2091 -0.0004 20 6 2.1966 -1.2022 0.0050 21 9 1.5165 -2.3696 0.0106 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6513 2.1332 -0.0004 26 1 3.1396 1.5743 3.4436 27 1 2.6945 3.5387 -1.1768 28 1 3.8177 4.6948 -0.2808 29 1 5.8284 3.5474 -1.3190 30 1 4.7062 2.3908 -2.2157 31 1 6.2917 -0.9264 0.0992 32 1 4.1150 -2.1460 -0.0007 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259999369.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:16 Heat of formation + Delta-G solvation = -26.400553 kcal Electronic energy + Delta-G solvation = -18339.979404 eV Core-core repulsion = 15374.257093 eV Total energy + Delta-G solvation = -2965.722312 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.27742 -39.27287 -37.10094 -35.83909 -32.26795 -32.08456 -29.36116 -27.17861 -25.65486 -22.93276 -22.43423 -21.27497 -20.17588 -18.92625 -16.79601 -16.45254 -16.03854 -15.08262 -14.63092 -14.56998 -14.25012 -13.86037 -13.50410 -13.21392 -12.92645 -12.85470 -12.60126 -12.23670 -11.80086 -11.32940 -11.09145 -10.97638 -10.75831 -10.67799 -10.40140 -10.27407 -9.51108 -9.35062 -9.00850 -8.47951 -8.17597 -8.05499 -7.52754 -6.03173 -4.02609 1.48758 2.09563 3.24568 3.34948 3.36650 3.41174 4.38654 4.53628 4.88086 4.97414 5.14953 5.30160 5.41533 5.54659 5.64629 5.89486 5.92894 6.04034 6.21741 6.30202 6.30973 6.49307 6.57028 6.69850 6.74534 6.79502 6.92734 6.98091 7.28374 7.31347 7.55406 7.71436 7.86588 8.37856 8.47259 8.90476 9.50989 10.97768 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.020617 B = 0.009911 C = 0.009356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.750266 B = 2824.515906 C = 2992.096474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.100 4.100 3 C -0.072 4.072 4 C 0.092 3.908 5 C 0.086 3.914 6 C -0.450 4.450 7 H 0.065 0.935 8 C 0.063 3.937 9 N -0.875 5.875 10 Si 0.885 3.115 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C -0.212 4.212 15 C -0.178 4.178 16 C -0.163 4.163 17 C 0.357 3.643 18 O -0.402 6.402 19 C -0.115 4.115 20 C 0.048 3.952 21 F -0.154 7.154 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.124 0.876 26 H 0.260 0.740 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.825 -5.175 -5.032 7.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.101 4.101 3 C -0.090 4.090 4 C 0.091 3.909 5 C 0.086 3.914 6 C -0.488 4.488 7 H 0.083 0.917 8 C -0.140 4.140 9 N -0.512 5.512 10 Si 0.713 3.287 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.250 4.250 15 C -0.216 4.216 16 C -0.164 4.164 17 C 0.212 3.788 18 O -0.271 6.271 19 C -0.134 4.134 20 C 0.029 3.971 21 F -0.133 7.133 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.142 0.858 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.661 -4.647 -4.921 7.273 hybrid contribution 0.217 -0.435 1.148 1.247 sum -2.444 -5.081 -3.773 6.784 Atomic orbital electron populations 1.20673 0.91285 1.02832 1.01787 1.19926 0.96153 0.92198 1.01846 1.20559 0.93872 0.95989 0.98553 1.19469 0.92102 0.93717 0.85582 1.17672 0.95457 0.86730 0.91572 1.20396 1.04202 1.36270 0.87911 0.91705 1.24959 0.94605 0.95747 0.98655 1.69944 1.15105 1.40808 1.25372 0.86615 0.81187 0.77812 0.83096 1.19602 1.21085 1.21005 1.23215 0.94819 0.99869 1.07106 1.22734 0.97019 1.04643 0.97156 1.20434 0.96695 0.92404 1.06889 1.23514 0.88303 0.92390 0.74617 1.90607 1.70471 1.35091 1.30947 1.21001 0.92088 0.98249 1.02083 1.17163 0.89738 0.80569 1.09642 1.91385 1.80345 1.46731 1.94829 0.91607 0.91842 0.91162 0.85773 0.92926 0.91603 0.90129 0.90160 0.91793 0.90625 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 9.83 36.01 0.35 -1.31 16 2 C -0.10 -1.89 5.89 -104.44 -0.62 -2.51 16 3 C -0.07 -1.50 8.15 -39.66 -0.32 -1.83 16 4 C 0.09 2.09 3.35 -104.15 -0.35 1.74 16 5 C 0.09 2.07 0.97 -156.81 -0.15 1.92 16 6 C -0.45 -11.99 6.65 -34.44 -0.23 -12.22 16 7 H 0.06 1.80 7.83 -52.49 -0.41 1.39 16 8 C 0.06 1.67 5.28 -17.82 -0.09 1.58 16 9 N -0.88 -23.53 11.16 55.43 0.62 -22.91 16 10 Si 0.89 21.10 29.55 -169.99 -5.02 16.08 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 C -0.21 -4.65 9.43 -26.69 -0.25 -4.90 16 15 C -0.18 -3.88 8.61 -26.69 -0.23 -4.11 16 16 C -0.16 -3.39 5.85 -105.07 -0.61 -4.00 16 17 C 0.36 7.05 11.26 34.36 0.39 7.44 16 18 O -0.40 -9.22 12.47 5.58 0.07 -9.15 16 19 C -0.12 -2.12 9.77 -39.03 -0.38 -2.50 16 20 C 0.05 0.90 7.23 -39.48 -0.29 0.61 16 21 F -0.15 -2.73 16.45 2.25 0.04 -2.69 16 22 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.06 0.92 7.62 -51.93 -0.40 0.53 16 24 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 25 H 0.12 2.58 7.03 -52.49 -0.37 2.21 16 26 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 27 H 0.07 1.32 7.15 -51.93 -0.37 0.95 16 28 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 29 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.08 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.13 1.90 8.06 -52.49 -0.42 1.47 16 LS Contribution 277.93 15.07 4.19 4.19 Total: -1.00 -28.42 277.93 -6.53 -34.95 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -3.64 Total: -0.38 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -2.78 Total: -20.09 kcal Atomic # 7 Polarization: -23.53 SS G_CDS: 0.62 Total: -22.91 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.07 Total: -9.15 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.04 Total: -2.69 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.42 -6.53 -34.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259999369.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.550 kcal (2) G-P(sol) polarization free energy of solvation -28.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds