Wall clock time and date at job start Mon Mar 30 2020 05:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38383 * 119.83651 * 2 1 4 4 C 1.37879 * 120.19970 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.06209 * 179.97438 * 4 3 2 6 6 C 1.50706 * 115.55178 * 114.14555 * 5 4 3 7 7 H 1.07993 * 119.99956 * 144.45477 * 6 5 4 8 8 C 1.37880 * 119.99849 * 324.45546 * 6 5 4 9 9 N 1.31514 * 119.99958 * 351.66653 * 8 6 5 10 10 Si 1.86801 * 119.99824 * 171.66696 * 8 6 5 11 11 H 1.48497 * 109.47161 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.46748 * 120.00081 * 10 8 6 13 13 H 1.48500 * 109.46839 * 239.99735 * 10 8 6 14 14 C 1.53007 * 117.50114 * 328.47469 * 5 4 3 15 15 C 1.53001 * 117.49988 * 259.81516 * 5 4 3 16 16 C 1.39869 * 119.87450 * 359.97008 * 4 3 2 17 17 C 1.47171 * 120.15890 * 180.02562 * 16 4 3 18 18 O 1.21256 * 119.99869 * 353.89255 * 17 16 4 19 19 C 1.39806 * 119.68516 * 0.02562 * 16 4 3 20 20 C 1.38142 * 119.79316 * 359.74561 * 19 16 4 21 21 F 1.35101 * 119.94013 * 180.27053 * 20 19 16 22 22 H 1.09001 * 109.47330 * 90.00122 * 1 2 3 23 23 H 1.08999 * 109.47038 * 210.00199 * 1 2 3 24 24 H 1.09000 * 109.46879 * 330.00170 * 1 2 3 25 25 H 1.07996 * 119.90665 * 359.97438 * 3 2 1 26 26 H 0.96998 * 120.00173 * 175.02286 * 9 8 6 27 27 H 1.09000 * 117.49013 * 0.02562 * 14 5 4 28 28 H 1.08995 * 117.50051 * 145.02154 * 14 5 4 29 29 H 1.08995 * 117.49864 * 214.98328 * 15 5 4 30 30 H 1.09005 * 117.49529 * 359.97438 * 15 5 4 31 31 H 1.08000 * 120.00464 * 173.88606 * 17 16 4 32 32 H 1.07998 * 120.10225 * 179.97438 * 19 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.2004 0.0000 4 6 3.5743 1.2091 -0.0005 5 6 4.3209 2.5181 -0.0011 6 6 5.1265 2.8075 1.2392 7 1 6.0695 3.3281 1.1613 8 6 4.6597 2.4075 2.4734 9 7 3.4429 1.9225 2.5905 10 14 5.7556 2.5546 3.9790 11 1 7.0677 3.1256 3.5823 12 1 5.1091 3.4445 4.9767 13 1 5.9612 1.2099 4.5748 14 6 3.6657 3.7049 -0.7108 15 6 4.8788 3.0126 -1.3372 16 6 4.2786 0.0007 -0.0004 17 6 5.7503 0.0028 -0.0004 18 8 6.3552 1.0478 -0.1122 19 6 3.5780 -1.2091 -0.0004 20 6 2.1966 -1.2022 0.0050 21 9 1.5165 -2.3696 0.0106 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6513 2.1332 -0.0004 26 1 3.1396 1.5743 3.4436 27 1 2.6945 3.5387 -1.1768 28 1 3.8177 4.6948 -0.2808 29 1 5.8284 3.5474 -1.3190 30 1 4.7062 2.3908 -2.2157 31 1 6.2917 -0.9264 0.0992 32 1 4.1150 -2.1460 -0.0007 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259999369.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:16 Heat of formation + Delta-G solvation = -40.306464 kcal Electronic energy + Delta-G solvation = -18340.582410 eV Core-core repulsion = 15374.257093 eV Total energy + Delta-G solvation = -2966.325317 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.69450 -40.84396 -38.67342 -37.53354 -34.10720 -33.65099 -30.89910 -28.57249 -27.61758 -24.48633 -23.92986 -22.97962 -21.77793 -20.64913 -18.40247 -18.14483 -17.52987 -16.60830 -16.45870 -16.19487 -15.80630 -15.39539 -15.19828 -14.78363 -14.58824 -14.11103 -14.01082 -13.93817 -13.23535 -13.01278 -12.92069 -12.79171 -12.41048 -12.21659 -12.14578 -12.00417 -11.30210 -11.19582 -10.76453 -10.31927 -9.85381 -9.56804 -9.11897 -7.99568 -6.05078 -0.01865 0.58382 1.34820 1.40697 1.50328 1.84379 2.43984 2.98404 3.07919 3.42078 3.65957 3.79244 3.96168 4.01503 4.09009 4.45603 4.53420 4.68566 4.75209 4.80181 4.85740 4.96089 4.99166 5.01497 5.19911 5.25599 5.29961 5.42450 5.56388 5.64310 5.80342 5.97044 6.20656 6.46448 6.86151 6.98631 7.48727 8.96639 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.020617 B = 0.009911 C = 0.009356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.750266 B = 2824.515906 C = 2992.096474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.098 4.098 3 C -0.090 4.090 4 C 0.070 3.930 5 C 0.065 3.935 6 C -0.460 4.460 7 H 0.040 0.960 8 C 0.030 3.970 9 N -0.888 5.888 10 Si 0.930 3.070 11 H -0.278 1.278 12 H -0.283 1.283 13 H -0.279 1.279 14 C -0.207 4.207 15 C -0.166 4.166 16 C -0.187 4.187 17 C 0.357 3.643 18 O -0.443 6.443 19 C -0.103 4.103 20 C 0.040 3.960 21 F -0.146 7.146 22 H 0.088 0.912 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.117 0.883 26 H 0.257 0.743 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.131 0.869 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.425 -6.900 -5.252 9.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.099 4.099 3 C -0.108 4.108 4 C 0.069 3.931 5 C 0.065 3.935 6 C -0.497 4.497 7 H 0.058 0.942 8 C -0.171 4.171 9 N -0.526 5.526 10 Si 0.757 3.243 11 H -0.203 1.203 12 H -0.209 1.209 13 H -0.205 1.205 14 C -0.245 4.245 15 C -0.203 4.203 16 C -0.188 4.188 17 C 0.215 3.785 18 O -0.315 6.315 19 C -0.122 4.122 20 C 0.021 3.979 21 F -0.125 7.125 22 H 0.107 0.893 23 H 0.090 0.910 24 H 0.092 0.908 25 H 0.135 0.865 26 H 0.067 0.933 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.147 0.853 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.267 -6.381 -5.146 8.825 hybrid contribution 0.379 0.061 1.167 1.229 sum -2.888 -6.320 -3.979 8.007 Atomic orbital electron populations 1.20747 0.88822 1.03409 1.03438 1.20257 0.98055 0.91572 1.00004 1.20537 0.93539 0.96621 1.00086 1.19498 0.92802 0.93634 0.87134 1.17715 0.96314 0.88269 0.91246 1.20403 1.03521 1.36256 0.89566 0.94177 1.25384 0.95535 0.95954 1.00184 1.70051 1.15648 1.41492 1.25364 0.85927 0.79668 0.77754 0.80936 1.20312 1.20943 1.20526 1.23191 0.95743 0.98866 1.06700 1.22652 0.96431 1.04260 0.96984 1.20736 0.97642 0.92695 1.07704 1.24265 0.88148 0.93527 0.72592 1.90601 1.70958 1.36937 1.32957 1.21321 0.92126 0.98875 0.99829 1.17288 0.90154 0.80818 1.09604 1.91408 1.80187 1.46133 1.94758 0.89309 0.90995 0.90830 0.86496 0.93287 0.89870 0.91039 0.91125 0.90436 0.85310 0.81916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.01 9.83 71.24 0.70 -2.31 16 2 C -0.10 -3.51 5.89 -19.74 -0.12 -3.62 16 3 C -0.09 -3.69 8.15 22.22 0.18 -3.51 16 4 C 0.07 3.13 3.35 -19.56 -0.07 3.07 16 5 C 0.06 3.14 0.97 -53.67 -0.05 3.08 16 6 C -0.46 -24.89 6.65 25.60 0.17 -24.72 16 7 H 0.04 2.30 7.83 -2.91 -0.02 2.28 16 8 C 0.03 1.60 5.28 84.66 0.45 2.04 16 9 N -0.89 -47.65 11.16 21.45 0.24 -47.41 16 10 Si 0.93 43.49 29.55 68.60 2.03 45.52 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 14 C -0.21 -9.13 9.43 30.62 0.29 -8.84 16 15 C -0.17 -7.26 8.61 30.62 0.26 -7.00 16 16 C -0.19 -7.44 5.85 -20.16 -0.12 -7.56 16 17 C 0.36 13.49 11.26 70.17 0.79 14.28 16 18 O -0.44 -20.20 12.47 -2.95 -0.04 -20.24 16 19 C -0.10 -3.47 9.77 22.63 0.22 -3.25 16 20 C 0.04 1.41 7.23 22.33 0.16 1.57 16 21 F -0.15 -4.70 16.45 44.97 0.74 -3.96 16 22 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 23 H 0.07 1.88 7.62 -2.39 -0.02 1.87 16 24 H 0.07 2.00 8.08 -2.39 -0.02 1.98 16 25 H 0.12 4.84 7.03 -2.91 -0.02 4.82 16 26 H 0.26 13.49 8.32 -92.71 -0.77 12.71 16 27 H 0.08 3.32 7.15 -2.39 -0.02 3.30 16 28 H 0.07 3.21 8.14 -2.39 -0.02 3.20 16 29 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 30 H 0.08 3.12 8.14 -2.38 -0.02 3.11 16 31 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 32 H 0.16 4.16 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -60.65 277.93 6.97 -53.68 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.13 Total: 9.17 kcal Atomic # 6 Polarization: -39.63 SS G_CDS: 2.87 Total: -36.76 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.24 Total: -47.41 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.04 Total: -20.24 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.74 Total: -3.96 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -60.65 6.97 -53.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259999369.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.371 kcal (2) G-P(sol) polarization free energy of solvation -60.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds