Wall clock time and date at job start Mon Mar 30 2020 06:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 110.99281 * 2 1 4 4 C 1.54142 * 111.10545 * 124.15726 * 2 1 3 5 5 C 1.50880 * 110.47170 * 89.51294 * 4 2 1 6 6 C 1.39594 * 126.84016 * 200.56176 * 5 4 2 7 7 C 1.37694 * 121.05774 * 180.64995 * 6 5 4 8 8 C 1.50699 * 119.73281 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.46863 * 90.00036 * 8 7 6 10 10 C 1.50703 * 109.46859 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00290 * 359.97438 * 10 9 8 12 12 C 1.37885 * 120.00078 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99694 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00221 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47090 * 59.99520 * 14 12 10 16 16 H 1.48490 * 109.47194 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47019 * 299.99974 * 14 12 10 18 18 C 1.38328 * 120.53924 * 0.05026 * 7 6 5 19 19 C 1.38030 * 119.29523 * 359.79092 * 18 7 6 20 20 C 1.38829 * 120.15873 * 0.02738 * 19 18 7 21 21 S 1.77434 * 130.56860 * 180.63808 * 20 19 18 22 22 H 1.09005 * 109.46760 * 295.84008 * 1 2 3 23 23 H 1.08989 * 109.47486 * 55.84307 * 1 2 3 24 24 H 1.09005 * 109.46465 * 175.84543 * 1 2 3 25 25 H 1.09003 * 109.28499 * 329.24942 * 4 2 1 26 26 H 1.09001 * 109.29131 * 209.78818 * 4 2 1 27 27 H 1.08004 * 119.46744 * 0.68035 * 6 5 4 28 28 H 1.09002 * 109.47295 * 210.00030 * 8 7 6 29 29 H 1.08994 * 109.46828 * 330.00473 * 8 7 6 30 30 H 1.08995 * 109.47443 * 299.99805 * 9 8 7 31 31 H 1.08998 * 109.47485 * 60.00414 * 9 8 7 32 32 H 0.97000 * 120.00134 * 180.02562 * 13 12 10 33 33 H 1.07995 * 120.35541 * 179.79302 * 18 7 6 34 34 H 1.08001 * 119.91882 * 180.02562 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9206 1.0177 0.0000 4 6 2.0851 -0.8074 1.1900 5 6 2.2639 -2.2559 0.8073 6 6 2.3528 -3.3459 1.6748 7 6 2.5297 -4.6240 1.1939 8 6 2.6212 -5.7791 2.1574 9 6 1.2216 -6.3417 2.4134 10 6 1.3131 -7.4964 3.3774 11 1 2.2734 -7.7991 3.7680 12 6 0.1708 -8.1673 3.7599 13 7 -0.9986 -7.7990 3.2839 14 14 0.2841 -9.5991 4.9542 15 1 0.8707 -9.1298 6.2353 16 1 -1.0742 -10.1450 5.2028 17 1 1.1462 -10.6602 4.3744 18 6 2.6247 -4.8562 -0.1665 19 6 2.5358 -3.7921 -1.0411 20 6 2.3537 -2.5040 -0.5562 21 16 2.1899 -0.9601 -1.4152 22 1 -0.3633 0.4479 0.9250 23 1 -0.3634 0.5769 -0.8503 24 1 -0.3632 -1.0250 -0.0745 25 1 1.3898 -0.7394 2.0267 26 1 3.0477 -0.3926 1.4889 27 1 2.2812 -3.1842 2.7403 28 1 3.2537 -6.5581 1.7316 29 1 3.0519 -5.4347 3.0975 30 1 0.5892 -5.5627 2.8391 31 1 0.7908 -6.6860 1.4732 32 1 -1.8022 -8.2707 3.5532 33 1 2.7667 -5.8594 -0.5403 34 1 2.6082 -3.9619 -2.1052 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260001701.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:48 Heat of formation + Delta-G solvation = -1.480055 kcal Electronic energy + Delta-G solvation = -15126.642205 eV Core-core repulsion = 12728.213704 eV Total energy + Delta-G solvation = -2398.428502 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.31261 -35.79994 -33.80442 -32.02990 -30.81888 -29.01550 -26.76902 -25.14484 -22.70543 -22.17325 -21.24826 -19.49021 -17.49300 -16.34532 -15.53148 -15.15769 -14.89789 -14.57308 -14.40904 -13.47947 -13.43062 -12.89454 -12.77666 -12.54329 -12.33265 -12.18871 -11.61299 -11.44102 -11.34360 -11.00518 -10.93468 -10.80140 -10.57152 -9.97568 -9.85765 -9.79142 -9.16495 -8.91730 -8.51010 -8.36056 -7.21061 -6.01485 -4.04984 1.42111 1.60063 1.71777 2.32280 3.32116 3.36767 3.38947 3.94266 4.39008 4.44603 4.60104 4.73020 5.10694 5.12487 5.33971 5.39853 5.49234 5.54479 5.60232 5.66185 5.69482 5.79586 6.02072 6.08163 6.10713 6.42293 6.51259 6.60295 6.65232 6.94006 7.06195 7.26068 7.65054 7.78466 7.97777 8.37991 9.01772 9.59185 11.09443 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.038877 B = 0.004496 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.049858 B = 6225.773256 C = 6491.574605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.052 4.052 3 H 0.116 0.884 4 C -0.083 4.083 5 C -0.104 4.104 6 C -0.096 4.096 7 C -0.051 4.051 8 C -0.080 4.080 9 C 0.030 3.970 10 C -0.524 4.524 11 H 0.056 0.944 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.104 4.104 19 C -0.086 4.086 20 C -0.095 4.095 21 S -0.170 6.170 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.121 0.879 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.017 0.983 31 H 0.018 0.982 32 H 0.261 0.739 33 H 0.130 0.870 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.611 14.675 -6.472 16.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.180 4.180 3 H 0.134 0.866 4 C -0.121 4.121 5 C -0.109 4.109 6 C -0.116 4.116 7 C -0.053 4.053 8 C -0.118 4.118 9 C -0.007 4.007 10 C -0.562 4.562 11 H 0.074 0.926 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.720 3.280 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.124 4.124 19 C -0.109 4.109 20 C -0.207 4.207 21 S 0.071 5.929 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.139 0.861 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.035 0.965 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.148 0.852 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.656 15.100 -7.698 17.868 hybrid contribution -0.327 -1.261 1.837 2.252 sum 5.329 13.839 -5.861 15.946 Atomic orbital electron populations 1.21986 0.92086 1.03471 1.02398 1.23994 0.99387 1.00864 0.93756 0.86593 1.20955 1.02490 0.90569 0.98036 1.20709 1.02708 0.94674 0.92829 1.20716 1.00678 0.90941 0.99239 1.20218 0.95137 0.95074 0.94862 1.20869 1.01847 0.93271 0.95769 1.19071 0.89210 0.95470 0.96917 1.21214 0.93208 1.15136 1.26664 0.92619 1.25021 0.95432 0.97439 0.96445 1.69960 0.98013 1.41147 1.44205 0.86651 0.77079 0.82692 0.81545 1.20227 1.21277 1.20198 1.21057 1.00160 0.98431 0.92738 1.20349 1.01089 0.89891 0.99558 1.21756 1.07915 0.95931 0.95077 1.85847 1.81690 1.04662 1.20717 0.91355 0.91620 0.91474 0.89244 0.89285 0.86053 0.91976 0.92135 0.96482 0.96382 0.92901 0.85165 0.86092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.30 37.16 0.35 -1.05 16 2 C -0.05 -0.54 4.04 -26.13 -0.11 -0.65 16 3 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.08 -0.96 5.82 -27.20 -0.16 -1.12 16 5 C -0.10 -1.59 5.98 -103.79 -0.62 -2.21 16 6 C -0.10 -1.62 9.61 -39.27 -0.38 -2.00 16 7 C -0.05 -0.93 5.12 -104.79 -0.54 -1.47 16 8 C -0.08 -1.64 5.27 -27.88 -0.15 -1.78 16 9 C 0.03 0.78 4.96 -27.88 -0.14 0.64 16 10 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 11 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -26.86 13.29 55.43 0.74 -26.13 16 14 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 18 C -0.10 -1.75 9.72 -39.62 -0.39 -2.14 16 19 C -0.09 -1.35 10.05 -39.44 -0.40 -1.74 16 20 C -0.09 -1.49 6.48 -39.12 -0.25 -1.74 16 21 S -0.17 -2.28 22.56 -107.50 -2.43 -4.71 16 22 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.09 0.95 7.92 -51.93 -0.41 0.54 16 26 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.12 1.92 8.06 -52.48 -0.42 1.50 16 28 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 29 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 34 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 298.91 15.07 4.50 4.50 Total: -1.00 -30.42 298.91 -10.41 -40.82 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -5.02 Total: -2.27 kcal Atomic # 6 Polarization: -25.51 SS G_CDS: -3.18 Total: -28.69 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.74 Total: -26.13 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -2.28 SS G_CDS: -2.43 Total: -4.71 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.42 -10.41 -40.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260001701.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.343 kcal (2) G-P(sol) polarization free energy of solvation -30.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds