Wall clock time and date at job start Mon Mar 30 2020 06:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 110.99281 * 2 1 4 4 C 1.54142 * 111.10545 * 124.15726 * 2 1 3 5 5 C 1.50880 * 110.47170 * 89.51294 * 4 2 1 6 6 C 1.39594 * 126.84016 * 200.56176 * 5 4 2 7 7 C 1.37694 * 121.05774 * 180.64995 * 6 5 4 8 8 C 1.50699 * 119.73281 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.46863 * 90.00036 * 8 7 6 10 10 C 1.50703 * 109.46859 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00290 * 359.97438 * 10 9 8 12 12 C 1.37885 * 120.00078 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99694 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00221 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47090 * 59.99520 * 14 12 10 16 16 H 1.48490 * 109.47194 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47019 * 299.99974 * 14 12 10 18 18 C 1.38328 * 120.53924 * 0.05026 * 7 6 5 19 19 C 1.38030 * 119.29523 * 359.79092 * 18 7 6 20 20 C 1.38829 * 120.15873 * 0.02738 * 19 18 7 21 21 S 1.77434 * 130.56860 * 180.63808 * 20 19 18 22 22 H 1.09005 * 109.46760 * 295.84008 * 1 2 3 23 23 H 1.08989 * 109.47486 * 55.84307 * 1 2 3 24 24 H 1.09005 * 109.46465 * 175.84543 * 1 2 3 25 25 H 1.09003 * 109.28499 * 329.24942 * 4 2 1 26 26 H 1.09001 * 109.29131 * 209.78818 * 4 2 1 27 27 H 1.08004 * 119.46744 * 0.68035 * 6 5 4 28 28 H 1.09002 * 109.47295 * 210.00030 * 8 7 6 29 29 H 1.08994 * 109.46828 * 330.00473 * 8 7 6 30 30 H 1.08995 * 109.47443 * 299.99805 * 9 8 7 31 31 H 1.08998 * 109.47485 * 60.00414 * 9 8 7 32 32 H 0.97000 * 120.00134 * 180.02562 * 13 12 10 33 33 H 1.07995 * 120.35541 * 179.79302 * 18 7 6 34 34 H 1.08001 * 119.91882 * 180.02562 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9206 1.0177 0.0000 4 6 2.0851 -0.8074 1.1900 5 6 2.2639 -2.2559 0.8073 6 6 2.3528 -3.3459 1.6748 7 6 2.5297 -4.6240 1.1939 8 6 2.6212 -5.7791 2.1574 9 6 1.2216 -6.3417 2.4134 10 6 1.3131 -7.4964 3.3774 11 1 2.2734 -7.7991 3.7680 12 6 0.1708 -8.1673 3.7599 13 7 -0.9986 -7.7990 3.2839 14 14 0.2841 -9.5991 4.9542 15 1 0.8707 -9.1298 6.2353 16 1 -1.0742 -10.1450 5.2028 17 1 1.1462 -10.6602 4.3744 18 6 2.6247 -4.8562 -0.1665 19 6 2.5358 -3.7921 -1.0411 20 6 2.3537 -2.5040 -0.5562 21 16 2.1899 -0.9601 -1.4152 22 1 -0.3633 0.4479 0.9250 23 1 -0.3634 0.5769 -0.8503 24 1 -0.3632 -1.0250 -0.0745 25 1 1.3898 -0.7394 2.0267 26 1 3.0477 -0.3926 1.4889 27 1 2.2812 -3.1842 2.7403 28 1 3.2537 -6.5581 1.7316 29 1 3.0519 -5.4347 3.0975 30 1 0.5892 -5.5627 2.8391 31 1 0.7908 -6.6860 1.4732 32 1 -1.8022 -8.2707 3.5532 33 1 2.7667 -5.8594 -0.5403 34 1 2.6082 -3.9619 -2.1052 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260001701.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:48 Heat of formation + Delta-G solvation = -16.056488 kcal Electronic energy + Delta-G solvation = -15127.274287 eV Core-core repulsion = 12728.213704 eV Total energy + Delta-G solvation = -2399.060583 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.55272 -36.97061 -35.56398 -33.79320 -31.93196 -30.69825 -27.79967 -26.97212 -24.12651 -23.30952 -22.77641 -20.85195 -18.67363 -18.45926 -16.74318 -16.53544 -16.07537 -16.03476 -15.77028 -14.78250 -14.55950 -14.49347 -14.06290 -13.88802 -13.78918 -13.64215 -12.97223 -12.80866 -12.73995 -12.42095 -12.35250 -12.19006 -12.04571 -11.67914 -11.60876 -11.21830 -11.00225 -10.55788 -10.33208 -9.73313 -8.35734 -8.18740 -6.32165 0.18816 0.35282 0.63968 1.27721 1.40825 1.43855 1.51856 2.40905 2.66314 3.13161 3.43770 3.65683 3.87223 3.92108 4.05672 4.27899 4.37538 4.47125 4.53894 4.67268 4.69475 4.81187 4.85033 4.86778 4.90198 5.10961 5.15187 5.23424 5.27634 5.33751 5.48937 5.53157 5.82800 5.84664 5.94464 6.22075 6.84569 7.37473 8.91600 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.038877 B = 0.004496 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.049858 B = 6225.773256 C = 6491.574605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.041 4.041 3 H 0.150 0.850 4 C -0.084 4.084 5 C -0.106 4.106 6 C -0.108 4.108 7 C -0.076 4.076 8 C -0.065 4.065 9 C 0.038 3.962 10 C -0.545 4.545 11 H 0.064 0.936 12 C 0.001 3.999 13 N -0.934 5.934 14 Si 0.966 3.034 15 H -0.265 1.265 16 H -0.284 1.284 17 H -0.266 1.266 18 C -0.114 4.114 19 C -0.091 4.091 20 C -0.108 4.108 21 S -0.178 6.178 22 H 0.089 0.911 23 H 0.077 0.923 24 H 0.038 0.962 25 H 0.102 0.898 26 H 0.109 0.891 27 H 0.126 0.874 28 H 0.067 0.933 29 H 0.065 0.935 30 H -0.011 1.011 31 H -0.011 1.011 32 H 0.264 0.736 33 H 0.136 0.864 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.290 15.988 -6.082 18.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.168 4.168 3 H 0.168 0.832 4 C -0.122 4.122 5 C -0.111 4.111 6 C -0.128 4.128 7 C -0.078 4.078 8 C -0.102 4.102 9 C 0.001 3.999 10 C -0.583 4.583 11 H 0.082 0.918 12 C -0.197 4.197 13 N -0.574 5.574 14 Si 0.790 3.210 15 H -0.190 1.190 16 H -0.209 1.209 17 H -0.191 1.191 18 C -0.134 4.134 19 C -0.114 4.114 20 C -0.220 4.220 21 S 0.063 5.937 22 H 0.107 0.893 23 H 0.096 0.904 24 H 0.057 0.943 25 H 0.120 0.880 26 H 0.127 0.873 27 H 0.144 0.856 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.007 0.993 31 H 0.007 0.993 32 H 0.072 0.928 33 H 0.154 0.846 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.352 16.425 -7.316 19.069 hybrid contribution -0.567 -1.557 1.657 2.343 sum 5.785 14.868 -5.659 16.927 Atomic orbital electron populations 1.21996 0.91708 1.02116 1.04086 1.24218 0.99641 1.01681 0.91306 0.83235 1.21071 1.04035 0.88241 0.98831 1.21143 1.01257 0.96251 0.92486 1.20838 1.00956 0.91100 0.99882 1.20090 0.97692 0.94972 0.95050 1.20581 0.98454 0.94288 0.96884 1.18901 0.91824 0.94355 0.94835 1.21683 0.93721 1.15836 1.27053 0.91788 1.25994 0.94939 1.00463 0.98332 1.70107 0.98859 1.42702 1.45758 0.85487 0.77299 0.78975 0.79219 1.19026 1.20943 1.19081 1.21172 1.00473 0.99282 0.92482 1.20577 1.00626 0.89880 1.00363 1.22126 1.06949 0.96984 0.95968 1.85858 1.81828 1.03614 1.22386 0.89271 0.90406 0.94253 0.87968 0.87321 0.85641 0.91466 0.91593 0.99291 0.99280 0.92777 0.84609 0.84289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.30 71.98 0.67 -1.76 16 2 C -0.04 -0.73 4.04 30.98 0.13 -0.60 16 3 H 0.15 1.77 8.14 -2.39 -0.02 1.75 16 4 C -0.08 -1.73 5.82 30.29 0.18 -1.55 16 5 C -0.11 -3.13 5.98 -19.32 -0.12 -3.25 16 6 C -0.11 -3.67 9.61 22.47 0.22 -3.45 16 7 C -0.08 -2.85 5.12 -19.97 -0.10 -2.95 16 8 C -0.06 -2.71 5.27 29.85 0.16 -2.56 16 9 C 0.04 2.03 4.96 29.85 0.15 2.18 16 10 C -0.55 -31.07 9.11 25.60 0.23 -30.83 16 11 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 12 C 0.00 0.03 5.46 84.66 0.46 0.49 16 13 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 14 Si 0.97 44.14 29.54 68.60 2.03 46.16 16 15 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 16 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 18 C -0.11 -3.93 9.72 22.24 0.22 -3.71 16 19 C -0.09 -2.86 10.05 22.36 0.22 -2.63 16 20 C -0.11 -3.30 6.48 22.57 0.15 -3.16 16 21 S -0.18 -4.43 22.56 -56.49 -1.27 -5.71 16 22 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 23 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 25 H 0.10 1.88 7.92 -2.39 -0.02 1.86 16 26 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 28 H 0.07 2.69 8.08 -2.39 -0.02 2.67 16 29 H 0.07 2.64 8.08 -2.39 -0.02 2.62 16 30 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 31 H -0.01 -0.66 8.14 -2.39 -0.02 -0.67 16 32 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 33 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 34 H 0.14 3.71 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -66.50 298.91 4.66 -61.84 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 1.06 Total: 8.63 kcal Atomic # 6 Polarization: -56.34 SS G_CDS: 2.56 Total: -53.78 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.28 Total: -57.14 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: -4.43 SS G_CDS: -1.27 Total: -5.71 kcal Total: -66.50 4.66 -61.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260001701.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.783 kcal (2) G-P(sol) polarization free energy of solvation -66.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds