Wall clock time and date at job start Mon Mar 30 2020 06:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.96809 * 2 1 4 4 C 1.54141 * 111.09963 * 235.86904 * 2 1 3 5 5 C 1.50876 * 110.51494 * 213.75151 * 4 2 1 6 6 C 1.39598 * 126.82271 * 200.21106 * 5 4 2 7 7 C 1.37706 * 121.05321 * 180.37866 * 6 5 4 8 8 C 1.50696 * 119.72711 * 180.09573 * 7 6 5 9 9 C 1.53002 * 109.47303 * 89.99588 * 8 7 6 10 10 C 1.50706 * 109.46931 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00193 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99398 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99350 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 10 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 10 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 10 18 18 C 1.38323 * 120.54256 * 0.36408 * 7 6 5 19 19 C 1.38027 * 119.28850 * 359.34772 * 18 7 6 20 20 C 1.38813 * 120.16214 * 0.49054 * 19 18 7 21 21 S 1.77438 * 130.56719 * 180.08739 * 20 19 18 22 22 H 1.08997 * 109.46971 * 184.13618 * 1 2 3 23 23 H 1.09001 * 109.47103 * 304.13192 * 1 2 3 24 24 H 1.08995 * 109.47039 * 64.13116 * 1 2 3 25 25 H 1.08995 * 109.27366 * 93.46309 * 4 2 1 26 26 H 1.09003 * 109.20691 * 333.99025 * 4 2 1 27 27 H 1.07996 * 119.47933 * 0.35863 * 6 5 4 28 28 H 1.09004 * 109.47476 * 329.99737 * 8 7 6 29 29 H 1.09004 * 109.47043 * 209.99811 * 8 7 6 30 30 H 1.09000 * 109.46986 * 60.00149 * 9 8 7 31 31 H 1.08993 * 109.47662 * 299.99926 * 9 8 7 32 32 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 33 33 H 1.08005 * 120.35048 * 179.59074 * 18 7 6 34 34 H 1.08000 * 119.91323 * 180.20139 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9200 1.0178 0.0000 4 6 2.0849 -0.8069 -1.1904 5 6 3.3714 -1.4962 -0.8081 6 6 4.3534 -1.9763 -1.6764 7 6 5.4847 -2.5970 -1.1957 8 6 6.5269 -3.1021 -2.1600 9 6 7.5530 -1.9988 -2.4260 10 6 8.5955 -2.5041 -3.3898 11 1 8.5323 -3.5113 -3.7745 12 6 9.6300 -1.6806 -3.7804 13 7 10.5395 -2.1214 -4.6219 14 14 9.7398 0.0612 -3.1145 15 1 8.9976 0.9822 -4.0122 16 1 9.1452 0.1095 -1.7545 17 1 11.1640 0.4765 -3.0471 18 6 5.6698 -2.7657 0.1647 19 6 4.7132 -2.2925 1.0400 20 6 3.5744 -1.6639 0.5555 21 16 2.1909 -0.9597 1.4150 22 1 -0.3633 -1.0250 0.0741 23 1 -0.3633 0.5766 0.8507 24 1 -0.3633 0.4484 -0.9247 25 1 2.2724 -0.1326 -2.0259 26 1 1.3509 -1.5551 -1.4897 27 1 4.2237 -1.8593 -2.7421 28 1 6.0477 -3.3861 -3.0970 29 1 7.0288 -3.9694 -1.7311 30 1 8.0322 -1.7147 -1.4890 31 1 7.0512 -1.1315 -2.8549 32 1 11.2671 -1.5419 -4.8970 33 1 6.5552 -3.2589 0.5380 34 1 4.8490 -2.4159 2.1043 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260001704.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:51 Heat of formation + Delta-G solvation = 1.604829 kcal Electronic energy + Delta-G solvation = -15081.218917 eV Core-core repulsion = 12682.924186 eV Total energy + Delta-G solvation = -2398.294731 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.40191 -35.87102 -33.93597 -32.15527 -31.06302 -29.50108 -26.73898 -25.37106 -22.77327 -22.09652 -21.09296 -19.63105 -17.47138 -16.79852 -16.04472 -15.20235 -15.03052 -14.42993 -14.25527 -13.73741 -13.51698 -12.99172 -12.86943 -12.76890 -12.47572 -12.20396 -12.05901 -11.69505 -11.43988 -11.23866 -11.07962 -10.85781 -10.22640 -10.09690 -9.94849 -9.73298 -9.22111 -9.10113 -8.62749 -8.55307 -7.30470 -6.06810 -4.05275 1.31147 1.49146 1.59533 2.24327 3.29559 3.37309 3.42237 3.82003 4.24974 4.43644 4.47476 4.71160 4.99010 4.99831 5.22812 5.27637 5.34454 5.36322 5.49392 5.56576 5.58205 5.68355 5.79110 5.96370 5.99462 6.30105 6.39307 6.41940 6.53051 6.74697 6.90118 7.12656 7.25489 7.40498 7.75758 8.50241 8.97688 9.55688 11.06505 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.035327 B = 0.004785 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.412064 B = 5850.087828 C = 6034.188879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.053 4.053 3 H 0.103 0.897 4 C -0.083 4.083 5 C -0.106 4.106 6 C -0.096 4.096 7 C -0.057 4.057 8 C -0.071 4.071 9 C -0.006 4.006 10 C -0.522 4.522 11 H 0.073 0.927 12 C 0.068 3.932 13 N -0.903 5.903 14 Si 0.877 3.123 15 H -0.277 1.277 16 H -0.265 1.265 17 H -0.287 1.287 18 C -0.104 4.104 19 C -0.086 4.086 20 C -0.094 4.094 21 S -0.168 6.168 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.123 0.877 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.018 0.982 31 H 0.012 0.988 32 H 0.263 0.737 33 H 0.132 0.868 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.916 3.306 9.798 21.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.182 4.182 3 H 0.121 0.879 4 C -0.121 4.121 5 C -0.111 4.111 6 C -0.116 4.116 7 C -0.059 4.059 8 C -0.108 4.108 9 C -0.043 4.043 10 C -0.560 4.560 11 H 0.091 0.909 12 C -0.133 4.133 13 N -0.542 5.542 14 Si 0.705 3.295 15 H -0.203 1.203 16 H -0.189 1.189 17 H -0.213 1.213 18 C -0.124 4.124 19 C -0.109 4.109 20 C -0.206 4.206 21 S 0.072 5.928 22 H 0.088 0.912 23 H 0.084 0.916 24 H 0.092 0.908 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.141 0.859 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.036 0.964 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.150 0.850 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -19.263 3.311 10.935 22.397 hybrid contribution 0.800 1.062 -0.950 1.634 sum -18.463 4.372 9.985 21.441 Atomic orbital electron populations 1.21709 0.91186 1.03394 1.02771 1.23963 0.99407 1.01091 0.93718 0.87913 1.20964 0.94236 0.98871 0.98011 1.20742 0.96223 1.01289 0.92855 1.20751 0.92800 0.98722 0.99326 1.20242 0.94968 0.95747 0.94894 1.20671 0.94263 0.99717 0.96199 1.19553 0.93890 0.93841 0.97024 1.21140 1.07811 1.01319 1.25762 0.90891 1.25006 0.95388 0.98347 0.94584 1.69914 1.13978 1.36767 1.33511 0.86807 0.77195 0.85236 0.80284 1.20286 1.18949 1.21310 1.21089 0.98622 0.99959 0.92707 1.20368 0.91970 0.98903 0.99653 1.21792 0.98162 1.05534 0.95136 1.85905 1.28610 1.57734 1.20524 0.91200 0.91622 0.90823 0.89330 0.89083 0.85887 0.91540 0.91352 0.96419 0.96971 0.92699 0.85007 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.96 9.27 37.16 0.34 -0.62 16 2 C -0.05 -0.53 4.04 -26.14 -0.11 -0.64 16 3 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.08 -0.91 5.87 -27.20 -0.16 -1.07 16 5 C -0.11 -1.54 5.98 -103.79 -0.62 -2.16 16 6 C -0.10 -1.53 9.61 -39.27 -0.38 -1.91 16 7 C -0.06 -0.98 5.12 -104.79 -0.54 -1.51 16 8 C -0.07 -1.39 5.27 -27.88 -0.15 -1.54 16 9 C -0.01 -0.14 4.02 -27.88 -0.11 -0.25 16 10 C -0.52 -14.80 9.66 -34.44 -0.33 -15.13 16 11 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 12 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 13 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 14 Si 0.88 21.86 27.47 -169.99 -4.67 17.20 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 16 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 C -0.10 -1.65 9.72 -39.63 -0.39 -2.03 16 19 C -0.09 -1.27 10.05 -39.45 -0.40 -1.67 16 20 C -0.09 -1.41 6.48 -39.13 -0.25 -1.66 16 21 S -0.17 -2.16 22.56 -107.50 -2.43 -4.59 16 22 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.09 0.89 7.85 -51.93 -0.41 0.48 16 27 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 28 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 29 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 30 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 31 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.13 1.90 8.06 -52.48 -0.42 1.48 16 34 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 295.26 15.07 4.45 4.45 Total: -1.00 -31.01 295.26 -10.03 -41.04 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -4.98 Total: -2.78 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: -3.18 Total: -28.30 kcal Atomic # 7 Polarization: -27.80 SS G_CDS: 0.77 Total: -27.03 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.20 kcal Atomic # 16 Polarization: -2.16 SS G_CDS: -2.43 Total: -4.59 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.01 -10.03 -41.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260001704.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.648 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds