Wall clock time and date at job start Mon Mar 30 2020 06:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.96809 * 2 1 4 4 C 1.54141 * 111.09963 * 235.86904 * 2 1 3 5 5 C 1.50876 * 110.51494 * 213.75151 * 4 2 1 6 6 C 1.39598 * 126.82271 * 200.21106 * 5 4 2 7 7 C 1.37706 * 121.05321 * 180.37866 * 6 5 4 8 8 C 1.50696 * 119.72711 * 180.09573 * 7 6 5 9 9 C 1.53002 * 109.47303 * 89.99588 * 8 7 6 10 10 C 1.50706 * 109.46931 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00193 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99398 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99350 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 10 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 10 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 10 18 18 C 1.38323 * 120.54256 * 0.36408 * 7 6 5 19 19 C 1.38027 * 119.28850 * 359.34772 * 18 7 6 20 20 C 1.38813 * 120.16214 * 0.49054 * 19 18 7 21 21 S 1.77438 * 130.56719 * 180.08739 * 20 19 18 22 22 H 1.08997 * 109.46971 * 184.13618 * 1 2 3 23 23 H 1.09001 * 109.47103 * 304.13192 * 1 2 3 24 24 H 1.08995 * 109.47039 * 64.13116 * 1 2 3 25 25 H 1.08995 * 109.27366 * 93.46309 * 4 2 1 26 26 H 1.09003 * 109.20691 * 333.99025 * 4 2 1 27 27 H 1.07996 * 119.47933 * 0.35863 * 6 5 4 28 28 H 1.09004 * 109.47476 * 329.99737 * 8 7 6 29 29 H 1.09004 * 109.47043 * 209.99811 * 8 7 6 30 30 H 1.09000 * 109.46986 * 60.00149 * 9 8 7 31 31 H 1.08993 * 109.47662 * 299.99926 * 9 8 7 32 32 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 33 33 H 1.08005 * 120.35048 * 179.59074 * 18 7 6 34 34 H 1.08000 * 119.91323 * 180.20139 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9200 1.0178 0.0000 4 6 2.0849 -0.8069 -1.1904 5 6 3.3714 -1.4962 -0.8081 6 6 4.3534 -1.9763 -1.6764 7 6 5.4847 -2.5970 -1.1957 8 6 6.5269 -3.1021 -2.1600 9 6 7.5530 -1.9988 -2.4260 10 6 8.5955 -2.5041 -3.3898 11 1 8.5323 -3.5113 -3.7745 12 6 9.6300 -1.6806 -3.7804 13 7 10.5395 -2.1214 -4.6219 14 14 9.7398 0.0612 -3.1145 15 1 8.9976 0.9822 -4.0122 16 1 9.1452 0.1095 -1.7545 17 1 11.1640 0.4765 -3.0471 18 6 5.6698 -2.7657 0.1647 19 6 4.7132 -2.2925 1.0400 20 6 3.5744 -1.6639 0.5555 21 16 2.1909 -0.9597 1.4150 22 1 -0.3633 -1.0250 0.0741 23 1 -0.3633 0.5766 0.8507 24 1 -0.3633 0.4484 -0.9247 25 1 2.2724 -0.1326 -2.0259 26 1 1.3509 -1.5551 -1.4897 27 1 4.2237 -1.8593 -2.7421 28 1 6.0477 -3.3861 -3.0970 29 1 7.0288 -3.9694 -1.7311 30 1 8.0322 -1.7147 -1.4890 31 1 7.0512 -1.1315 -2.8549 32 1 11.2671 -1.5419 -4.8970 33 1 6.5552 -3.2589 0.5380 34 1 4.8490 -2.4159 2.1043 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260001704.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:50 Heat of formation + Delta-G solvation = -14.011908 kcal Electronic energy + Delta-G solvation = -15081.896109 eV Core-core repulsion = 12682.924186 eV Total energy + Delta-G solvation = -2398.971924 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.55776 -36.94480 -35.56859 -33.97514 -32.06451 -31.11053 -27.72587 -27.00599 -23.98927 -23.11869 -22.64967 -20.95670 -18.98345 -18.48222 -17.01426 -16.41674 -16.25871 -16.05645 -15.53609 -14.92693 -14.68130 -14.52807 -14.38686 -13.96892 -13.72658 -13.50520 -12.96012 -12.91419 -12.83897 -12.41706 -12.37260 -12.18513 -11.88840 -11.66302 -11.61157 -11.31523 -11.03009 -10.78170 -10.36001 -9.75732 -8.36394 -8.30958 -6.35111 0.16274 0.33730 0.60707 1.27967 1.33438 1.35593 1.47649 2.34143 2.63293 3.04341 3.37491 3.65763 3.88019 3.93994 4.02761 4.23090 4.34572 4.45332 4.51741 4.65721 4.67075 4.71594 4.80442 4.86671 4.93868 5.03372 5.10125 5.24511 5.26352 5.30419 5.39492 5.41681 5.63451 5.78095 5.93046 6.26177 6.72657 7.29756 8.85577 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.035327 B = 0.004785 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.412064 B = 5850.087828 C = 6034.188879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.043 4.043 3 H 0.110 0.890 4 C -0.084 4.084 5 C -0.109 4.109 6 C -0.106 4.106 7 C -0.077 4.077 8 C -0.060 4.060 9 C 0.000 4.000 10 C -0.533 4.533 11 H 0.037 0.963 12 C 0.008 3.992 13 N -0.949 5.949 14 Si 0.946 3.054 15 H -0.266 1.266 16 H -0.252 1.252 17 H -0.282 1.282 18 C -0.112 4.112 19 C -0.091 4.091 20 C -0.107 4.107 21 S -0.183 6.183 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.096 0.904 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.130 0.870 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.017 0.983 31 H 0.015 0.985 32 H 0.267 0.733 33 H 0.139 0.861 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.111 5.254 10.890 24.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.171 4.171 3 H 0.128 0.872 4 C -0.122 4.122 5 C -0.114 4.114 6 C -0.125 4.125 7 C -0.079 4.079 8 C -0.098 4.098 9 C -0.037 4.037 10 C -0.571 4.571 11 H 0.055 0.945 12 C -0.189 4.189 13 N -0.590 5.590 14 Si 0.770 3.230 15 H -0.191 1.191 16 H -0.176 1.176 17 H -0.207 1.207 18 C -0.132 4.132 19 C -0.114 4.114 20 C -0.219 4.219 21 S 0.058 5.942 22 H 0.087 0.913 23 H 0.090 0.910 24 H 0.114 0.886 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.147 0.853 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.035 0.965 31 H 0.033 0.967 32 H 0.076 0.924 33 H 0.157 0.843 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -21.480 5.251 12.039 25.178 hybrid contribution 1.406 0.398 -1.294 1.952 sum -20.074 5.649 10.745 23.459 Atomic orbital electron populations 1.21734 0.88949 1.03742 1.04259 1.24163 1.01029 1.00625 0.91319 0.87152 1.21068 0.92782 0.99471 0.98836 1.21150 0.97088 1.00645 0.92509 1.20870 0.92865 0.98770 1.00025 1.20030 0.95246 0.97701 0.94910 1.20426 0.94066 0.98296 0.97002 1.19448 0.93684 0.95140 0.95470 1.21493 1.09200 0.99989 1.26383 0.94505 1.25945 0.94948 1.03141 0.94852 1.70059 1.14970 1.38719 1.35254 0.85714 0.77577 0.79506 0.80224 1.19069 1.17581 1.20740 1.21207 0.99344 1.00217 0.92383 1.20587 0.91809 0.98536 1.00457 1.22147 0.98702 1.05085 0.95974 1.85960 1.27681 1.58121 1.22437 0.91327 0.90960 0.88551 0.87726 0.87656 0.85253 0.91770 0.91652 0.96504 0.96650 0.92426 0.84288 0.84246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.39 9.27 71.98 0.67 -0.72 16 2 C -0.04 -0.72 4.04 30.98 0.13 -0.59 16 3 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 4 C -0.08 -1.57 5.87 30.29 0.18 -1.39 16 5 C -0.11 -2.93 5.98 -19.33 -0.12 -3.05 16 6 C -0.11 -3.23 9.61 22.47 0.22 -3.02 16 7 C -0.08 -2.61 5.12 -19.97 -0.10 -2.71 16 8 C -0.06 -2.38 5.27 29.85 0.16 -2.23 16 9 C 0.00 0.00 4.02 29.85 0.12 0.12 16 10 C -0.53 -30.89 9.66 25.60 0.25 -30.64 16 11 H 0.04 2.33 7.99 -2.91 -0.02 2.30 16 12 C 0.01 0.48 5.47 84.66 0.46 0.94 16 13 N -0.95 -59.77 13.96 21.45 0.30 -59.47 16 14 Si 0.95 44.87 27.47 68.60 1.88 46.75 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 16 H -0.25 -11.33 6.54 99.48 0.65 -10.68 16 17 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 18 C -0.11 -3.46 9.72 22.24 0.22 -3.24 16 19 C -0.09 -2.58 10.05 22.36 0.22 -2.35 16 20 C -0.11 -3.01 6.48 22.56 0.15 -2.86 16 21 S -0.18 -4.28 22.56 -56.49 -1.27 -5.55 16 22 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.11 1.70 7.85 -2.39 -0.02 1.68 16 27 H 0.13 3.67 8.06 -2.91 -0.02 3.64 16 28 H 0.06 2.50 8.08 -2.39 -0.02 2.48 16 29 H 0.06 2.55 8.08 -2.38 -0.02 2.53 16 30 H 0.02 0.79 7.20 -2.39 -0.02 0.78 16 31 H 0.02 0.71 7.57 -2.39 -0.02 0.69 16 32 H 0.27 15.64 8.31 -92.70 -0.77 14.87 16 33 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 34 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -67.17 295.26 4.46 -62.70 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 1.01 Total: 7.31 kcal Atomic # 6 Polarization: -54.28 SS G_CDS: 2.54 Total: -51.74 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: 0.30 Total: -59.47 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.75 kcal Atomic # 16 Polarization: -4.28 SS G_CDS: -1.27 Total: -5.55 kcal Total: -67.17 4.46 -62.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260001704.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.691 kcal (2) G-P(sol) polarization free energy of solvation -67.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds