Wall clock time and date at job start Mon Mar 30 2020 06:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.46701 * 2 1 4 4 N 1.30085 * 124.95858 * 270.21406 * 3 2 1 5 5 C 1.35815 * 109.63829 * 180.27023 * 4 3 2 6 6 C 1.40452 * 106.96033 * 359.72249 * 5 4 3 7 7 C 1.38840 * 119.95102 * 179.97438 * 6 5 4 8 8 C 1.37853 * 119.87208 * 359.97438 * 7 6 5 9 9 C 1.38746 * 120.47851 * 0.02562 * 8 7 6 10 10 C 1.37841 * 120.49488 * 359.97438 * 9 8 7 11 11 F 1.35102 * 120.13438 * 179.97438 * 10 9 8 12 12 N 1.36083 * 124.95652 * 90.00025 * 3 2 1 13 13 C 1.46499 * 126.34829 * 0.02562 * 12 3 2 14 14 C 1.50701 * 109.46992 * 269.71243 * 13 12 3 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99594 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99875 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47061 * 90.00257 * 18 16 14 20 20 H 1.48497 * 109.46906 * 209.99430 * 18 16 14 21 21 H 1.48498 * 109.47403 * 329.99876 * 18 16 14 22 22 H 1.08998 * 109.47458 * 299.99753 * 1 2 3 23 23 H 1.08999 * 109.47510 * 60.00083 * 1 2 3 24 24 H 1.09010 * 109.46762 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47458 * 240.00247 * 2 1 3 26 26 H 1.08991 * 109.47424 * 119.99567 * 2 1 3 27 27 H 1.07999 * 120.06607 * 179.97438 * 7 6 5 28 28 H 1.07997 * 119.75838 * 180.02562 * 8 7 6 29 29 H 1.07993 * 119.75328 * 180.02562 * 9 8 7 30 30 H 1.09002 * 109.47391 * 149.71233 * 13 12 3 31 31 H 1.09001 * 109.46813 * 29.71290 * 13 12 3 32 32 H 0.97002 * 119.99739 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2768 2.1250 -1.0661 5 6 2.7203 3.3575 -0.7073 6 6 2.7363 3.3945 0.6966 7 6 3.1511 4.5443 1.3550 8 6 3.5470 5.6467 0.6282 9 6 3.5337 5.6170 -0.7588 10 6 3.1251 4.4847 -1.4304 11 9 3.1146 4.4640 -2.7812 12 7 2.2920 2.1560 1.1153 13 6 2.1360 1.7131 2.5030 14 6 0.7450 2.0406 2.9815 15 1 0.0469 2.5294 2.3181 16 6 0.3634 1.7153 4.2658 17 7 -0.8507 2.0007 4.6831 18 14 1.5707 0.8693 5.4130 19 1 2.3384 1.8933 6.1662 20 1 0.8267 0.0079 6.3667 21 1 2.5067 0.0343 4.6181 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8899 27 1 3.1637 4.5749 2.4345 28 1 3.8698 6.5400 1.1423 29 1 3.8467 6.4873 -1.3165 30 1 2.8660 2.2233 3.1315 31 1 2.2961 0.6364 2.5609 32 1 -1.1191 1.7722 5.5868 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260005385.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:40 Heat of formation + Delta-G solvation = -4.389165 kcal Electronic energy + Delta-G solvation = -17760.982368 eV Core-core repulsion = 14828.507293 eV Total energy + Delta-G solvation = -2932.475075 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.82187 -43.12178 -38.30661 -35.99490 -34.38899 -34.24609 -31.15653 -29.83037 -29.57270 -25.44284 -24.97685 -23.34429 -22.64081 -20.78023 -19.26606 -18.67457 -18.37778 -17.08237 -16.93816 -16.56465 -16.23630 -16.00825 -15.48512 -15.07152 -14.90731 -14.52849 -14.11446 -14.00789 -13.47335 -13.36293 -12.92290 -12.74452 -12.60999 -12.48711 -12.28758 -12.14248 -11.98522 -11.82247 -11.14076 -11.05449 -10.88996 -9.34837 -8.91784 -8.40360 -6.52101 -0.16042 0.44633 1.35730 1.35930 1.45638 1.69793 1.88169 2.25429 2.69551 2.91851 3.03219 3.25702 3.62436 3.94986 4.11319 4.20811 4.23959 4.32803 4.34777 4.48645 4.61304 4.72112 4.81348 4.94176 5.03879 5.14024 5.19722 5.34482 5.37029 5.41608 5.56575 5.88818 5.95300 6.31534 6.52364 6.85140 7.12306 8.75604 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.024012 B = 0.007861 C = 0.006510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.809965 B = 3561.167006 C = 4299.747040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.039 4.039 3 C 0.282 3.718 4 N -0.530 5.530 5 C -0.024 4.024 6 C 0.052 3.948 7 C -0.121 4.121 8 C -0.073 4.073 9 C -0.149 4.149 10 C 0.113 3.887 11 F -0.144 7.144 12 N -0.466 5.466 13 C 0.218 3.782 14 C -0.545 4.545 15 H 0.026 0.974 16 C 0.028 3.972 17 N -0.933 5.933 18 Si 0.943 3.057 19 H -0.262 1.262 20 H -0.279 1.279 21 H -0.236 1.236 22 H 0.037 0.963 23 H 0.047 0.953 24 H 0.094 0.906 25 H 0.115 0.885 26 H 0.097 0.903 27 H 0.135 0.865 28 H 0.182 0.818 29 H 0.175 0.825 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.969 1.069 -4.791 11.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.078 4.078 3 C 0.017 3.983 4 N -0.251 5.251 5 C -0.144 4.144 6 C -0.060 4.060 7 C -0.142 4.142 8 C -0.092 4.092 9 C -0.170 4.170 10 C 0.092 3.908 11 F -0.122 7.122 12 N -0.152 5.152 13 C 0.098 3.902 14 C -0.583 4.583 15 H 0.044 0.956 16 C -0.173 4.173 17 N -0.571 5.571 18 Si 0.765 3.235 19 H -0.187 1.187 20 H -0.204 1.204 21 H -0.159 1.159 22 H 0.056 0.944 23 H 0.066 0.934 24 H 0.113 0.887 25 H 0.133 0.867 26 H 0.116 0.884 27 H 0.153 0.847 28 H 0.199 0.801 29 H 0.193 0.807 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.720 0.724 -5.369 11.128 hybrid contribution -0.281 -0.007 1.179 1.212 sum 9.439 0.717 -4.189 10.352 Atomic orbital electron populations 1.21658 0.93439 1.03451 1.01251 1.20273 0.96922 0.85145 1.05462 1.24244 0.96367 0.97285 0.80403 1.70346 1.22747 1.03557 1.28463 1.19316 1.08486 0.94667 0.91895 1.19117 1.03715 0.89369 0.93760 1.20449 1.02170 0.90714 1.00895 1.21111 0.97749 0.98054 0.92334 1.21207 1.03542 0.96753 0.95499 1.17129 1.04066 0.93525 0.76033 1.91423 1.94431 1.96984 1.29400 1.45701 1.50398 1.10223 1.08846 1.19949 0.97143 0.97637 0.75491 1.21103 0.96876 1.41429 0.98900 0.95554 1.25738 0.97042 0.95354 0.99136 1.70027 1.20401 1.47562 1.19152 0.85788 0.79174 0.79525 0.79048 1.18667 1.20433 1.15899 0.94381 0.93366 0.88689 0.86652 0.88450 0.84697 0.80087 0.80746 0.92721 0.91428 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 9.89 71.98 0.71 -3.92 16 2 C -0.04 -1.26 6.23 29.85 0.19 -1.08 16 3 C 0.28 11.60 7.11 137.91 0.98 12.58 16 4 N -0.53 -23.29 11.27 -179.84 -2.03 -25.31 16 5 C -0.02 -1.00 7.21 39.47 0.28 -0.72 16 6 C 0.05 2.16 6.87 38.84 0.27 2.43 16 7 C -0.12 -4.12 10.04 22.32 0.22 -3.89 16 8 C -0.07 -1.87 10.02 22.30 0.22 -1.65 16 9 C -0.15 -4.03 9.99 22.30 0.22 -3.81 16 10 C 0.11 4.10 7.34 22.58 0.17 4.26 16 11 F -0.14 -5.25 17.27 44.97 0.78 -4.47 16 12 N -0.47 -20.09 2.79 -509.63 -1.42 -21.51 16 13 C 0.22 9.39 4.75 85.63 0.41 9.80 16 14 C -0.55 -28.76 9.58 25.60 0.25 -28.52 16 15 H 0.03 1.64 8.06 -2.91 -0.02 1.62 16 16 C 0.03 1.46 5.47 84.66 0.46 1.92 16 17 N -0.93 -53.97 13.96 21.45 0.30 -53.67 16 18 Si 0.94 37.98 27.47 68.60 1.88 39.86 16 19 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 20 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 21 H -0.24 -8.37 6.54 99.48 0.65 -7.72 16 22 H 0.04 1.56 7.77 -2.39 -0.02 1.54 16 23 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 25 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 26 H 0.10 2.84 7.01 -2.39 -0.02 2.82 16 27 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 28 H 0.18 2.94 8.06 -2.91 -0.02 2.91 16 29 H 0.18 3.27 8.06 -2.91 -0.02 3.25 16 30 H 0.05 2.21 7.57 -2.39 -0.02 2.19 16 31 H 0.07 2.66 6.05 -2.39 -0.01 2.64 16 32 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -68.10 281.39 4.97 -63.14 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 1.07 Total: 14.56 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 4.38 Total: -12.60 kcal Atomic # 7 Polarization: -97.34 SS G_CDS: -3.15 Total: -100.49 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.78 Total: -4.47 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 1.88 Total: 39.86 kcal Total: -68.10 4.97 -63.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260005385.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.746 kcal (2) G-P(sol) polarization free energy of solvation -68.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds