Wall clock time and date at job start Mon Mar 30 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47247 * 2 1 4 4 C 1.50705 * 109.47139 * 120.00574 * 2 1 3 5 5 H 1.07998 * 119.99573 * 237.11313 * 4 2 1 6 6 C 1.37876 * 120.00122 * 57.11179 * 4 2 1 7 7 N 1.31515 * 119.99764 * 10.96822 * 6 4 2 8 8 Si 1.86804 * 120.00102 * 190.68879 * 6 4 2 9 9 H 1.48493 * 109.47289 * 180.27900 * 8 6 4 10 10 H 1.48500 * 109.47028 * 300.27953 * 8 6 4 11 11 H 1.48496 * 109.46837 * 60.27804 * 8 6 4 12 12 C 1.50706 * 109.46900 * 240.00332 * 2 1 3 13 13 C 1.38322 * 119.72431 * 234.48753 * 12 2 1 14 14 C 1.38037 * 119.28840 * 180.14815 * 13 12 2 15 15 C 1.38820 * 120.16036 * 359.91350 * 14 13 12 16 16 C 1.38891 * 121.14619 * 359.84176 * 15 14 13 17 17 C 1.37697 * 119.72977 * 54.21119 * 12 2 1 18 18 C 1.50877 * 115.36955 * 180.51098 * 16 15 14 19 19 C 1.54137 * 110.51234 * 339.44964 * 18 16 15 20 20 S 1.77438 * 130.57133 * 179.65164 * 15 14 13 21 21 H 1.09001 * 109.46919 * 294.11168 * 1 2 3 22 22 H 1.08998 * 109.47051 * 54.11286 * 1 2 3 23 23 H 1.09000 * 109.47504 * 174.11339 * 1 2 3 24 24 H 1.09003 * 109.46794 * 184.93903 * 3 2 1 25 25 H 1.08990 * 109.47184 * 304.94115 * 3 2 1 26 26 H 1.09004 * 109.47159 * 64.94522 * 3 2 1 27 27 H 0.96997 * 120.00180 * 359.43124 * 7 6 4 28 28 H 1.07998 * 120.35941 * 0.16337 * 13 12 2 29 29 H 1.08001 * 119.91859 * 179.89221 * 14 13 12 30 30 H 1.08004 * 119.46736 * 0.05060 * 17 12 2 31 31 H 1.08997 * 109.27344 * 219.17122 * 18 16 15 32 32 H 1.08999 * 109.21389 * 99.69582 * 18 16 15 33 33 H 1.09001 * 111.10219 * 270.32669 * 19 18 16 34 34 H 1.09000 * 111.10068 * 146.22821 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6911 -0.2003 1.9174 6 6 1.6509 -2.0120 1.4790 7 7 1.0315 -2.7048 0.5485 8 14 2.0207 -2.7936 3.1349 9 1 1.5174 -4.1906 3.1463 10 1 3.4877 -2.7941 3.3654 11 1 1.3511 -2.0174 4.2092 12 6 2.0323 -0.7104 -1.2306 13 6 2.9187 -1.7642 -1.1003 14 6 3.3754 -2.4065 -2.2336 15 6 2.9456 -1.9969 -3.4885 16 6 2.0519 -0.9436 -3.6333 17 6 1.6006 -0.3087 -2.4749 18 6 1.6636 -0.6161 -5.0539 19 6 2.7100 -1.1694 -6.0412 20 16 3.3528 -2.6075 -5.1039 21 1 -0.3633 0.4198 0.9380 22 1 -0.3633 0.6024 -0.8326 23 1 -0.3634 -1.0222 -0.1054 24 1 3.1264 1.4436 -0.0885 25 1 1.6063 1.9812 -0.8423 26 1 1.7508 1.9301 0.9310 27 1 0.8357 -2.2976 -0.3099 28 1 3.2498 -2.0813 -0.1225 29 1 4.0691 -3.2294 -2.1438 30 1 0.9054 0.5138 -2.5562 31 1 1.5976 0.4659 -5.1685 32 1 0.6926 -1.0607 -5.2720 33 1 3.4974 -0.4394 -6.2284 34 1 2.2414 -1.4861 -6.9730 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260009218.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:00 Heat of formation + Delta-G solvation = 16.954722 kcal Electronic energy + Delta-G solvation = -16237.593793 eV Core-core repulsion = 13839.964683 eV Total energy + Delta-G solvation = -2397.629110 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.21229 -36.16890 -33.40914 -31.71883 -29.26471 -28.47139 -26.14704 -24.70716 -23.75450 -22.37122 -20.70967 -18.85595 -17.13466 -16.63633 -15.25965 -14.63650 -14.46336 -14.14516 -13.77746 -13.27521 -12.98807 -12.70756 -12.53985 -12.35245 -11.92493 -11.63541 -11.49809 -11.13575 -10.93358 -10.75056 -10.70542 -10.33640 -10.13629 -10.07659 -9.87664 -9.49735 -8.76880 -8.50979 -8.28222 -7.93108 -6.91210 -6.25810 -4.13846 1.84305 2.07345 2.14032 2.64998 3.39857 3.42410 3.60808 4.46348 4.48305 4.74872 4.91178 5.12389 5.27919 5.51011 5.56346 5.77762 5.87973 5.97441 6.18799 6.23528 6.32170 6.37345 6.47158 6.60552 6.72717 6.77112 6.80886 6.96159 6.99554 7.12334 7.41512 7.49206 7.69496 7.85256 8.24359 8.38809 8.81615 9.56018 10.96854 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.030616 B = 0.007601 C = 0.006595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.340326 B = 3682.840938 C = 4244.789260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.076 3.924 3 C -0.118 4.118 4 C -0.594 4.594 5 H 0.053 0.947 6 C 0.023 3.977 7 N -0.899 5.899 8 Si 1.059 2.941 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.288 1.288 12 C -0.039 4.039 13 C -0.049 4.049 14 C -0.105 4.105 15 C -0.092 4.092 16 C -0.128 4.128 17 C -0.109 4.109 18 C -0.079 4.079 19 C -0.081 4.081 20 S -0.183 6.183 21 H 0.043 0.957 22 H 0.019 0.981 23 H 0.059 0.941 24 H 0.041 0.959 25 H 0.028 0.972 26 H 0.046 0.954 27 H 0.282 0.718 28 H 0.151 0.849 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.759 3.919 -8.739 9.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.076 3.924 3 C -0.175 4.175 4 C -0.632 4.632 5 H 0.071 0.929 6 C -0.183 4.183 7 N -0.536 5.536 8 Si 0.887 3.113 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.214 1.214 12 C -0.042 4.042 13 C -0.069 4.069 14 C -0.128 4.128 15 C -0.203 4.203 16 C -0.133 4.133 17 C -0.129 4.129 18 C -0.117 4.117 19 C -0.229 4.229 20 S 0.056 5.944 21 H 0.062 0.938 22 H 0.038 0.962 23 H 0.078 0.922 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.097 0.903 28 H 0.168 0.832 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.143 1.423 -8.393 8.779 hybrid contribution -0.486 2.416 -0.428 2.502 sum 1.657 3.840 -8.821 9.762 Atomic orbital electron populations 1.21920 0.97437 1.01216 0.98469 1.17442 0.92155 0.91630 0.91175 1.21702 0.99796 0.96784 0.99241 1.21809 1.33264 1.00486 1.07617 0.92857 1.25697 0.94843 0.94286 1.03482 1.70832 1.37801 1.39008 1.05932 0.83680 0.76263 0.76326 0.75000 1.20806 1.21438 1.21428 1.20519 0.93976 0.95174 0.94484 1.21606 0.93926 0.93084 0.98241 1.20458 1.01339 1.00838 0.90156 1.21657 1.03125 1.00392 0.95160 1.20558 0.99882 0.98493 0.94370 1.20653 1.00938 1.00241 0.91044 1.20757 0.98834 1.01949 0.90139 1.24185 1.00896 0.97652 1.00160 1.85753 1.79889 1.28240 1.00512 0.93764 0.96164 0.92166 0.93985 0.95245 0.93451 0.90345 0.83158 0.86877 0.87327 0.90106 0.89814 0.88995 0.87500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 7.76 37.16 0.29 -2.72 16 2 C 0.08 1.77 0.59 -156.81 -0.09 1.68 16 3 C -0.12 -2.41 8.22 37.16 0.31 -2.10 16 4 C -0.59 -15.26 6.87 -34.44 -0.24 -15.49 16 5 H 0.05 1.38 7.77 -52.49 -0.41 0.98 16 6 C 0.02 0.60 3.75 -17.82 -0.07 0.53 16 7 N -0.90 -24.96 11.74 55.43 0.65 -24.31 16 8 Si 1.06 23.78 29.92 -169.99 -5.09 18.70 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 12 C -0.04 -0.89 3.36 -104.79 -0.35 -1.25 16 13 C -0.05 -1.14 7.20 -39.62 -0.29 -1.43 16 14 C -0.10 -2.24 10.05 -39.44 -0.40 -2.63 16 15 C -0.09 -1.82 6.48 -39.12 -0.25 -2.08 16 16 C -0.13 -2.40 5.98 -103.79 -0.62 -3.02 16 17 C -0.11 -2.21 8.78 -39.27 -0.34 -2.55 16 18 C -0.08 -1.12 6.27 -27.20 -0.17 -1.29 16 19 C -0.08 -1.02 7.60 37.75 0.29 -0.73 16 20 S -0.18 -3.05 23.08 -107.50 -2.48 -5.53 16 21 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 22 H 0.02 0.39 7.27 -51.93 -0.38 0.02 16 23 H 0.06 1.49 5.79 -51.93 -0.30 1.19 16 24 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.03 0.53 7.87 -51.93 -0.41 0.12 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.28 7.81 3.90 -40.82 -0.16 7.65 16 28 H 0.15 3.80 5.42 -52.49 -0.28 3.52 16 29 H 0.11 2.24 8.06 -52.49 -0.42 1.81 16 30 H 0.11 2.02 7.14 -52.48 -0.37 1.64 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 279.18 15.07 4.21 4.21 Total: -1.00 -27.69 279.18 -9.14 -36.82 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -4.49 Total: 3.19 kcal Atomic # 6 Polarization: -31.14 SS G_CDS: -1.94 Total: -33.08 kcal Atomic # 7 Polarization: -24.96 SS G_CDS: 0.65 Total: -24.31 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -5.09 Total: 18.70 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -2.48 Total: -5.53 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.69 -9.14 -36.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260009218.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.779 kcal (2) G-P(sol) polarization free energy of solvation -27.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds