Wall clock time and date at job start Mon Mar 30 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47247 * 2 1 4 4 C 1.50705 * 109.47139 * 120.00574 * 2 1 3 5 5 H 1.07998 * 119.99573 * 237.11313 * 4 2 1 6 6 C 1.37876 * 120.00122 * 57.11179 * 4 2 1 7 7 N 1.31515 * 119.99764 * 10.96822 * 6 4 2 8 8 Si 1.86804 * 120.00102 * 190.68879 * 6 4 2 9 9 H 1.48493 * 109.47289 * 180.27900 * 8 6 4 10 10 H 1.48500 * 109.47028 * 300.27953 * 8 6 4 11 11 H 1.48496 * 109.46837 * 60.27804 * 8 6 4 12 12 C 1.50706 * 109.46900 * 240.00332 * 2 1 3 13 13 C 1.38322 * 119.72431 * 234.48753 * 12 2 1 14 14 C 1.38037 * 119.28840 * 180.14815 * 13 12 2 15 15 C 1.38820 * 120.16036 * 359.91350 * 14 13 12 16 16 C 1.38891 * 121.14619 * 359.84176 * 15 14 13 17 17 C 1.37697 * 119.72977 * 54.21119 * 12 2 1 18 18 C 1.50877 * 115.36955 * 180.51098 * 16 15 14 19 19 C 1.54137 * 110.51234 * 339.44964 * 18 16 15 20 20 S 1.77438 * 130.57133 * 179.65164 * 15 14 13 21 21 H 1.09001 * 109.46919 * 294.11168 * 1 2 3 22 22 H 1.08998 * 109.47051 * 54.11286 * 1 2 3 23 23 H 1.09000 * 109.47504 * 174.11339 * 1 2 3 24 24 H 1.09003 * 109.46794 * 184.93903 * 3 2 1 25 25 H 1.08990 * 109.47184 * 304.94115 * 3 2 1 26 26 H 1.09004 * 109.47159 * 64.94522 * 3 2 1 27 27 H 0.96997 * 120.00180 * 359.43124 * 7 6 4 28 28 H 1.07998 * 120.35941 * 0.16337 * 13 12 2 29 29 H 1.08001 * 119.91859 * 179.89221 * 14 13 12 30 30 H 1.08004 * 119.46736 * 0.05060 * 17 12 2 31 31 H 1.08997 * 109.27344 * 219.17122 * 18 16 15 32 32 H 1.08999 * 109.21389 * 99.69582 * 18 16 15 33 33 H 1.09001 * 111.10219 * 270.32669 * 19 18 16 34 34 H 1.09000 * 111.10068 * 146.22821 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6911 -0.2003 1.9174 6 6 1.6509 -2.0120 1.4790 7 7 1.0315 -2.7048 0.5485 8 14 2.0207 -2.7936 3.1349 9 1 1.5174 -4.1906 3.1463 10 1 3.4877 -2.7941 3.3654 11 1 1.3511 -2.0174 4.2092 12 6 2.0323 -0.7104 -1.2306 13 6 2.9187 -1.7642 -1.1003 14 6 3.3754 -2.4065 -2.2336 15 6 2.9456 -1.9969 -3.4885 16 6 2.0519 -0.9436 -3.6333 17 6 1.6006 -0.3087 -2.4749 18 6 1.6636 -0.6161 -5.0539 19 6 2.7100 -1.1694 -6.0412 20 16 3.3528 -2.6075 -5.1039 21 1 -0.3633 0.4198 0.9380 22 1 -0.3633 0.6024 -0.8326 23 1 -0.3634 -1.0222 -0.1054 24 1 3.1264 1.4436 -0.0885 25 1 1.6063 1.9812 -0.8423 26 1 1.7508 1.9301 0.9310 27 1 0.8357 -2.2976 -0.3099 28 1 3.2498 -2.0813 -0.1225 29 1 4.0691 -3.2294 -2.1438 30 1 0.9054 0.5138 -2.5562 31 1 1.5976 0.4659 -5.1685 32 1 0.6926 -1.0607 -5.2720 33 1 3.4974 -0.4394 -6.2284 34 1 2.2414 -1.4861 -6.9730 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260009218.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:00 Heat of formation + Delta-G solvation = 4.265109 kcal Electronic energy + Delta-G solvation = -16238.144056 eV Core-core repulsion = 13839.964683 eV Total energy + Delta-G solvation = -2398.179373 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.82358 -37.77637 -34.79248 -33.60493 -30.85192 -29.92838 -27.90566 -26.61861 -25.02202 -23.97769 -22.24328 -20.60512 -18.70742 -18.36200 -16.45626 -16.19254 -15.94543 -15.67793 -15.61576 -14.98469 -14.61839 -14.28247 -14.04459 -13.72249 -13.28290 -13.07874 -12.99591 -12.70393 -12.65853 -12.51855 -12.41850 -11.95944 -11.92560 -11.75356 -11.42403 -11.00224 -10.44364 -10.36037 -10.10072 -9.54757 -8.49256 -8.11903 -6.18527 0.39897 0.52446 0.70703 1.37558 1.55801 1.60471 1.79718 2.60560 2.87212 3.26691 3.60934 3.80284 4.01523 4.13395 4.28115 4.49369 4.54786 4.62579 4.65016 4.70028 4.72263 4.86928 4.89026 4.92939 5.07692 5.09814 5.16717 5.27125 5.33660 5.46654 5.66935 5.71878 6.00291 6.15383 6.28627 6.42885 6.81329 7.57524 8.93083 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.030616 B = 0.007601 C = 0.006595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.340326 B = 3682.840938 C = 4244.789260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.065 3.935 3 C -0.111 4.111 4 C -0.601 4.601 5 H 0.041 0.959 6 C -0.013 4.013 7 N -0.925 5.925 8 Si 1.095 2.905 9 H -0.291 1.291 10 H -0.277 1.277 11 H -0.275 1.275 12 C -0.055 4.055 13 C -0.075 4.075 14 C -0.118 4.118 15 C -0.109 4.109 16 C -0.122 4.122 17 C -0.114 4.114 18 C -0.080 4.080 19 C -0.064 4.064 20 S -0.200 6.200 21 H 0.038 0.962 22 H 0.047 0.953 23 H 0.031 0.969 24 H 0.035 0.965 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.275 0.725 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.129 0.871 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.332 5.330 -11.110 12.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.064 3.936 3 C -0.168 4.168 4 C -0.639 4.639 5 H 0.059 0.941 6 C -0.214 4.214 7 N -0.563 5.563 8 Si 0.920 3.080 9 H -0.216 1.216 10 H -0.202 1.202 11 H -0.201 1.201 12 C -0.058 4.058 13 C -0.095 4.095 14 C -0.141 4.141 15 C -0.221 4.221 16 C -0.128 4.128 17 C -0.134 4.134 18 C -0.117 4.117 19 C -0.211 4.211 20 S 0.039 5.961 21 H 0.058 0.942 22 H 0.066 0.934 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.137 0.863 29 H 0.132 0.868 30 H 0.147 0.853 31 H 0.129 0.871 32 H 0.115 0.885 33 H 0.129 0.871 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.728 2.854 -10.768 11.273 hybrid contribution -0.324 1.998 0.194 2.034 sum 1.405 4.852 -10.575 11.719 Atomic orbital electron populations 1.21794 0.97106 0.99872 0.99319 1.17533 0.92443 0.92990 0.90606 1.21616 0.99451 0.95336 1.00414 1.22064 1.32749 1.00646 1.08478 0.94051 1.26633 0.94491 0.95064 1.05254 1.70885 1.39689 1.39453 1.06274 0.83198 0.76820 0.75315 0.72688 1.21647 1.20244 1.20086 1.20446 0.94576 0.95377 0.95363 1.21346 0.95883 0.94721 0.97547 1.20507 1.01748 1.01009 0.90863 1.21945 1.03162 1.00833 0.96127 1.21176 0.98115 0.96945 0.96535 1.20823 1.01108 1.00856 0.90618 1.20874 0.99666 1.04077 0.87103 1.24443 1.00906 0.95545 1.00226 1.85800 1.80259 1.31081 0.98928 0.94241 0.93377 0.94952 0.94596 0.92749 0.93278 0.91070 0.86341 0.86759 0.85313 0.87142 0.88462 0.87052 0.83923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 7.76 71.98 0.56 -4.98 16 2 C 0.06 3.01 0.59 -53.67 -0.03 2.98 16 3 C -0.11 -4.42 8.22 71.98 0.59 -3.83 16 4 C -0.60 -31.73 6.87 25.60 0.18 -31.56 16 5 H 0.04 2.21 7.77 -2.91 -0.02 2.19 16 6 C -0.01 -0.70 3.75 84.65 0.32 -0.38 16 7 N -0.93 -53.17 11.74 21.45 0.25 -52.92 16 8 Si 1.10 49.21 29.92 68.60 2.05 51.26 16 9 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 10 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 12 C -0.06 -2.53 3.36 -19.97 -0.07 -2.60 16 13 C -0.08 -3.65 7.20 22.24 0.16 -3.49 16 14 C -0.12 -5.20 10.05 22.36 0.22 -4.97 16 15 C -0.11 -4.24 6.48 22.57 0.15 -4.09 16 16 C -0.12 -4.30 5.98 -19.32 -0.12 -4.42 16 17 C -0.11 -4.45 8.78 22.47 0.20 -4.25 16 18 C -0.08 -1.88 6.27 30.29 0.19 -1.69 16 19 C -0.06 -1.29 7.60 72.37 0.55 -0.74 16 20 S -0.20 -6.19 23.08 -56.49 -1.30 -7.49 16 21 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.05 1.83 7.27 -2.39 -0.02 1.81 16 23 H 0.03 1.61 5.79 -2.39 -0.01 1.60 16 24 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.05 1.86 7.87 -2.39 -0.02 1.84 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.28 15.82 3.90 -92.71 -0.36 15.46 16 28 H 0.12 6.40 5.42 -2.91 -0.02 6.38 16 29 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 30 H 0.13 4.38 7.14 -2.91 -0.02 4.36 16 31 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -61.92 279.18 5.39 -56.53 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 1.49 Total: 16.64 kcal Atomic # 6 Polarization: -66.91 SS G_CDS: 2.90 Total: -64.02 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: 0.25 Total: -52.92 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 2.05 Total: 51.26 kcal Atomic # 16 Polarization: -6.19 SS G_CDS: -1.30 Total: -7.49 kcal Total: -61.92 5.39 -56.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260009218.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.796 kcal (2) G-P(sol) polarization free energy of solvation -61.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds