Wall clock time and date at job start Mon Mar 30 2020 05:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47086 * 2 1 4 4 C 1.50694 * 109.47241 * 239.99833 * 2 1 3 5 5 H 1.07995 * 120.00557 * 239.74372 * 4 2 1 6 6 C 1.37884 * 119.99935 * 59.74537 * 4 2 1 7 7 N 1.31510 * 119.99959 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99935 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47089 * 89.99934 * 8 6 4 10 10 H 1.48501 * 109.46698 * 209.99798 * 8 6 4 11 11 H 1.48500 * 109.47196 * 329.99454 * 8 6 4 12 12 C 1.50703 * 109.47037 * 119.99841 * 2 1 3 13 13 C 1.38073 * 119.91937 * 245.11604 * 12 2 1 14 14 C 1.38280 * 119.29029 * 180.02562 * 13 12 2 15 15 C 1.37746 * 120.54095 * 359.87529 * 14 13 12 16 16 C 1.39554 * 121.05788 * 0.02562 * 15 14 13 17 17 C 1.38775 * 119.91690 * 65.13698 * 12 2 1 18 18 S 1.77428 * 130.57974 * 0.23478 * 17 12 2 19 19 C 1.83290 * 96.60239 * 164.53981 * 18 17 12 20 20 C 1.50874 * 126.82571 * 180.21698 * 16 15 14 21 21 H 1.09001 * 109.47510 * 300.00486 * 1 2 3 22 22 H 1.09003 * 109.47128 * 60.00180 * 1 2 3 23 23 H 1.09000 * 109.47275 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47051 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47718 * 299.99963 * 3 2 1 26 26 H 1.09005 * 109.47287 * 60.00161 * 3 2 1 27 27 H 0.97002 * 120.00065 * 180.02562 * 7 6 4 28 28 H 1.07995 * 120.35866 * 0.04801 * 13 12 2 29 29 H 1.07998 * 119.73207 * 179.90151 * 14 13 12 30 30 H 1.08003 * 119.46846 * 179.97438 * 15 14 13 31 31 H 1.09001 * 111.10235 * 266.92668 * 19 18 17 32 32 H 1.09006 * 111.13239 * 142.85295 * 19 18 17 33 33 H 1.08997 * 109.27282 * 79.96473 * 20 16 15 34 34 H 1.08996 * 109.27262 * 320.54268 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6566 -1.5860 -1.1314 6 6 1.6949 -0.2424 -2.4827 7 7 0.9343 0.8236 -2.6034 8 14 2.3170 -1.1235 -4.0079 9 1 1.3414 -2.1690 -4.4082 10 1 2.4763 -0.1455 -5.1140 11 1 3.6279 -1.7562 -3.7140 12 6 2.0323 -0.7104 1.2305 13 6 2.7366 -0.0109 2.1902 14 6 3.1919 -0.6758 3.3140 15 6 2.9455 -2.0209 3.4793 16 6 2.2338 -2.7455 2.5221 17 6 1.7862 -2.0661 1.3960 18 16 0.9305 -3.2194 0.3540 19 6 1.5601 -4.7399 1.1610 20 6 1.8874 -4.2130 2.5721 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 0.6966 1.1526 -3.4844 28 1 2.9295 1.0442 2.0649 29 1 3.7449 -0.1360 4.0684 30 1 3.3095 -2.5231 4.3635 31 1 2.4568 -5.1067 0.6616 32 1 0.7914 -5.5118 1.1989 33 1 1.0220 -4.3566 3.2190 34 1 2.7333 -4.7688 2.9766 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260011665.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:15 Heat of formation + Delta-G solvation = 19.112268 kcal Electronic energy + Delta-G solvation = -16293.322861 eV Core-core repulsion = 13895.787309 eV Total energy + Delta-G solvation = -2397.535552 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.07119 -35.79322 -33.67908 -31.44439 -29.24401 -28.48384 -25.76552 -25.11045 -23.58707 -22.41576 -20.72264 -18.64764 -16.92853 -16.02452 -15.21968 -14.73779 -14.68523 -14.22832 -13.90474 -13.16592 -12.80791 -12.53717 -12.34970 -11.84088 -11.69441 -11.51669 -11.29784 -11.01147 -10.84407 -10.73569 -10.60164 -10.34841 -10.11991 -9.68657 -9.50909 -9.17294 -8.85936 -8.79793 -8.27233 -7.87608 -6.57651 -5.91050 -3.97566 1.78303 2.03193 2.30185 3.05341 3.36237 3.42088 3.46708 4.28963 4.51638 4.83667 5.03525 5.24285 5.36455 5.46431 5.62439 5.72971 5.77450 5.97756 5.99039 6.16516 6.40654 6.58905 6.73632 6.80956 6.82586 6.96672 7.01590 7.11103 7.28453 7.39400 7.57431 7.65567 7.83041 8.08615 8.22550 8.48553 9.01119 9.65417 11.10392 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.022616 B = 0.010262 C = 0.008084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.772245 B = 2727.900658 C = 3462.956902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.093 3.907 3 C -0.132 4.132 4 C -0.486 4.486 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.889 5.889 8 Si 0.889 3.111 9 H -0.280 1.280 10 H -0.289 1.289 11 H -0.275 1.275 12 C 0.000 4.000 13 C -0.121 4.121 14 C -0.126 4.126 15 C -0.123 4.123 16 C -0.123 4.123 17 C -0.064 4.064 18 S -0.095 6.095 19 C -0.122 4.122 20 C -0.077 4.077 21 H 0.007 0.993 22 H 0.089 0.911 23 H 0.035 0.965 24 H 0.029 0.971 25 H 0.087 0.913 26 H 0.012 0.988 27 H 0.258 0.742 28 H 0.130 0.870 29 H 0.114 0.886 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.708 -6.176 9.321 11.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.092 3.908 3 C -0.190 4.190 4 C -0.525 4.525 5 H 0.080 0.920 6 C -0.134 4.134 7 N -0.529 5.529 8 Si 0.718 3.282 9 H -0.206 1.206 10 H -0.215 1.215 11 H -0.200 1.200 12 C -0.005 4.005 13 C -0.140 4.140 14 C -0.147 4.147 15 C -0.142 4.142 16 C -0.129 4.129 17 C -0.177 4.177 18 S 0.149 5.851 19 C -0.270 4.270 20 C -0.115 4.115 21 H 0.026 0.974 22 H 0.108 0.892 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.106 0.894 26 H 0.031 0.969 27 H 0.069 0.931 28 H 0.147 0.853 29 H 0.132 0.868 30 H 0.127 0.873 31 H 0.107 0.893 32 H 0.122 0.878 33 H 0.100 0.900 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.777 -6.062 8.121 10.164 hybrid contribution 1.258 -0.566 0.270 1.406 sum 2.035 -6.628 8.392 10.886 Atomic orbital electron populations 1.21856 0.96788 0.99608 1.00359 1.17328 0.92692 0.92115 0.88648 1.21893 0.98481 0.98110 1.00490 1.21013 1.30626 1.11655 0.89189 0.91989 1.24841 0.95029 0.94882 0.98652 1.69806 1.36891 1.23121 1.23040 0.86618 0.79394 0.79450 0.82768 1.20618 1.21507 1.19980 1.20100 0.93237 0.90871 0.96261 1.21217 0.99003 1.00265 0.93554 1.20838 1.01312 0.94214 0.98288 1.20488 1.00980 0.94291 0.98489 1.20801 1.01654 0.94729 0.95687 1.21812 1.02452 0.97044 0.96384 1.86636 1.58196 0.96369 1.43936 1.24370 1.04541 1.00368 0.97750 1.20731 1.02154 0.91970 0.96623 0.97418 0.89236 0.94650 0.95226 0.89448 0.96945 0.93142 0.85253 0.86754 0.87324 0.89253 0.87850 0.89977 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.09 37.16 0.30 -2.85 16 2 C 0.09 2.27 0.49 -156.82 -0.08 2.19 16 3 C -0.13 -3.12 6.93 37.16 0.26 -2.86 16 4 C -0.49 -12.98 6.62 -34.44 -0.23 -13.21 16 5 H 0.06 1.71 7.00 -52.49 -0.37 1.35 16 6 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 7 N -0.89 -24.37 9.35 55.43 0.52 -23.85 16 8 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.00 0.01 4.73 -104.48 -0.49 -0.49 16 13 C -0.12 -2.34 9.00 -39.63 -0.36 -2.70 16 14 C -0.13 -2.10 10.00 -39.75 -0.40 -2.50 16 15 C -0.12 -2.00 9.97 -39.27 -0.39 -2.39 16 16 C -0.12 -2.18 5.98 -103.79 -0.62 -2.80 16 17 C -0.06 -1.35 5.59 -39.13 -0.22 -1.57 16 18 S -0.09 -1.90 19.46 -107.50 -2.09 -4.00 16 19 C -0.12 -1.79 7.60 37.75 0.29 -1.50 16 20 C -0.08 -1.09 6.27 -27.21 -0.17 -1.26 16 21 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 22 H 0.09 2.38 6.05 -51.93 -0.31 2.06 16 23 H 0.03 0.86 6.15 -51.93 -0.32 0.54 16 24 H 0.03 0.67 7.75 -51.93 -0.40 0.27 16 25 H 0.09 2.25 6.09 -51.93 -0.32 1.94 16 26 H 0.01 0.25 7.27 -51.93 -0.38 -0.13 16 27 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.13 2.37 5.93 -52.49 -0.31 2.06 16 29 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 31 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 277.49 15.07 4.18 4.18 Total: -1.00 -28.25 277.49 -9.12 -37.37 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -4.50 Total: 0.07 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: -2.20 Total: -30.24 kcal Atomic # 7 Polarization: -24.37 SS G_CDS: 0.52 Total: -23.85 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.90 SS G_CDS: -2.09 Total: -4.00 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.25 -9.12 -37.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260011665.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.485 kcal (2) G-P(sol) polarization free energy of solvation -28.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds