Wall clock time and date at job start Mon Mar 30 2020 05:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47086 * 2 1 4 4 C 1.50694 * 109.47241 * 239.99833 * 2 1 3 5 5 H 1.07995 * 120.00557 * 239.74372 * 4 2 1 6 6 C 1.37884 * 119.99935 * 59.74537 * 4 2 1 7 7 N 1.31510 * 119.99959 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99935 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47089 * 89.99934 * 8 6 4 10 10 H 1.48501 * 109.46698 * 209.99798 * 8 6 4 11 11 H 1.48500 * 109.47196 * 329.99454 * 8 6 4 12 12 C 1.50703 * 109.47037 * 119.99841 * 2 1 3 13 13 C 1.38073 * 119.91937 * 245.11604 * 12 2 1 14 14 C 1.38280 * 119.29029 * 180.02562 * 13 12 2 15 15 C 1.37746 * 120.54095 * 359.87529 * 14 13 12 16 16 C 1.39554 * 121.05788 * 0.02562 * 15 14 13 17 17 C 1.38775 * 119.91690 * 65.13698 * 12 2 1 18 18 S 1.77428 * 130.57974 * 0.23478 * 17 12 2 19 19 C 1.83290 * 96.60239 * 164.53981 * 18 17 12 20 20 C 1.50874 * 126.82571 * 180.21698 * 16 15 14 21 21 H 1.09001 * 109.47510 * 300.00486 * 1 2 3 22 22 H 1.09003 * 109.47128 * 60.00180 * 1 2 3 23 23 H 1.09000 * 109.47275 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47051 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47718 * 299.99963 * 3 2 1 26 26 H 1.09005 * 109.47287 * 60.00161 * 3 2 1 27 27 H 0.97002 * 120.00065 * 180.02562 * 7 6 4 28 28 H 1.07995 * 120.35866 * 0.04801 * 13 12 2 29 29 H 1.07998 * 119.73207 * 179.90151 * 14 13 12 30 30 H 1.08003 * 119.46846 * 179.97438 * 15 14 13 31 31 H 1.09001 * 111.10235 * 266.92668 * 19 18 17 32 32 H 1.09006 * 111.13239 * 142.85295 * 19 18 17 33 33 H 1.08997 * 109.27282 * 79.96473 * 20 16 15 34 34 H 1.08996 * 109.27262 * 320.54268 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6566 -1.5860 -1.1314 6 6 1.6949 -0.2424 -2.4827 7 7 0.9343 0.8236 -2.6034 8 14 2.3170 -1.1235 -4.0079 9 1 1.3414 -2.1690 -4.4082 10 1 2.4763 -0.1455 -5.1140 11 1 3.6279 -1.7562 -3.7140 12 6 2.0323 -0.7104 1.2305 13 6 2.7366 -0.0109 2.1902 14 6 3.1919 -0.6758 3.3140 15 6 2.9455 -2.0209 3.4793 16 6 2.2338 -2.7455 2.5221 17 6 1.7862 -2.0661 1.3960 18 16 0.9305 -3.2194 0.3540 19 6 1.5601 -4.7399 1.1610 20 6 1.8874 -4.2130 2.5721 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 0.6966 1.1526 -3.4844 28 1 2.9295 1.0442 2.0649 29 1 3.7449 -0.1360 4.0684 30 1 3.3095 -2.5231 4.3635 31 1 2.4568 -5.1067 0.6616 32 1 0.7914 -5.5118 1.1989 33 1 1.0220 -4.3566 3.2190 34 1 2.7333 -4.7688 2.9766 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260011665.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:15 Heat of formation + Delta-G solvation = 5.463827 kcal Electronic energy + Delta-G solvation = -16293.914701 eV Core-core repulsion = 13895.787309 eV Total energy + Delta-G solvation = -2398.127392 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.50762 -37.46516 -35.06221 -33.30449 -30.65054 -29.98768 -27.61327 -27.15897 -24.84768 -23.93900 -22.13223 -20.32841 -18.46546 -17.86057 -16.75399 -16.39562 -15.96738 -15.70316 -15.33547 -14.87696 -14.59756 -13.92437 -13.67836 -13.44475 -13.27117 -13.04130 -12.95937 -12.77271 -12.52533 -12.45823 -12.26013 -12.14068 -12.01861 -11.50304 -11.16969 -10.79629 -10.68136 -10.35548 -10.20355 -9.31836 -8.10810 -7.94215 -6.06228 0.41205 0.62677 0.95104 1.40297 1.42879 1.50934 1.70354 2.48222 2.91705 3.29014 3.69391 3.87769 4.16171 4.20879 4.29857 4.59033 4.62495 4.72863 4.75814 4.82337 4.91153 4.96754 4.97834 5.08135 5.16576 5.31350 5.41316 5.52910 5.58696 5.62514 5.75186 5.81800 6.12440 6.20089 6.28655 6.50502 6.94449 7.57463 9.03891 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.022616 B = 0.010262 C = 0.008084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.772245 B = 2727.900658 C = 3462.956902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.088 3.912 3 C -0.121 4.121 4 C -0.485 4.485 5 H 0.045 0.955 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.937 3.063 9 H -0.282 1.282 10 H -0.285 1.285 11 H -0.275 1.275 12 C -0.038 4.038 13 C -0.136 4.136 14 C -0.119 4.119 15 C -0.116 4.116 16 C -0.125 4.125 17 C -0.088 4.088 18 S -0.187 6.187 19 C -0.095 4.095 20 C -0.075 4.075 21 H 0.015 0.985 22 H 0.063 0.937 23 H 0.028 0.972 24 H 0.027 0.973 25 H 0.060 0.940 26 H 0.031 0.969 27 H 0.256 0.744 28 H 0.131 0.869 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.096 0.904 32 H 0.133 0.867 33 H 0.101 0.899 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.013 -7.961 11.854 14.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.087 3.913 3 C -0.179 4.179 4 C -0.524 4.524 5 H 0.063 0.937 6 C -0.174 4.174 7 N -0.549 5.549 8 Si 0.764 3.236 9 H -0.208 1.208 10 H -0.211 1.211 11 H -0.200 1.200 12 C -0.042 4.042 13 C -0.156 4.156 14 C -0.139 4.139 15 C -0.136 4.136 16 C -0.131 4.131 17 C -0.200 4.200 18 S 0.056 5.944 19 C -0.243 4.243 20 C -0.112 4.112 21 H 0.034 0.966 22 H 0.082 0.918 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.079 0.921 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.149 0.851 29 H 0.170 0.830 30 H 0.169 0.831 31 H 0.114 0.886 32 H 0.151 0.849 33 H 0.119 0.881 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.089 -7.838 10.656 13.392 hybrid contribution 0.882 -0.093 -0.404 0.975 sum 2.971 -7.931 10.251 13.297 Atomic orbital electron populations 1.21688 0.97644 0.98903 0.99308 1.17248 0.92153 0.92392 0.89478 1.21731 0.98213 0.97913 1.00017 1.21109 1.29888 1.10968 0.90458 0.93670 1.25413 0.95606 0.95636 1.00763 1.69925 1.37803 1.23995 1.23144 0.85873 0.78717 0.78539 0.80434 1.20777 1.21060 1.19981 1.19996 0.95868 0.91961 0.96420 1.21354 0.99292 1.00597 0.94319 1.21253 1.00197 0.94752 0.97670 1.20993 0.99284 0.94153 0.99126 1.21377 1.00530 0.96588 0.94571 1.21919 1.03542 0.96814 0.97713 1.86736 1.59666 1.00963 1.47061 1.24492 1.05284 0.97350 0.97181 1.20818 1.04243 0.89797 0.96343 0.96604 0.91804 0.95254 0.95339 0.92086 0.95053 0.93393 0.85076 0.82992 0.83112 0.88558 0.84875 0.88093 0.87089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.01 8.09 71.98 0.58 -5.43 16 2 C 0.09 4.41 0.49 -53.68 -0.03 4.39 16 3 C -0.12 -5.86 6.93 71.98 0.50 -5.36 16 4 C -0.49 -26.76 6.62 25.60 0.17 -26.59 16 5 H 0.05 2.59 7.00 -2.91 -0.02 2.57 16 6 C 0.02 1.32 5.15 84.66 0.44 1.76 16 7 N -0.91 -51.60 9.35 21.45 0.20 -51.39 16 8 Si 0.94 45.17 29.54 68.60 2.03 47.20 16 9 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 10 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 11 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 12 C -0.04 -1.67 4.73 -19.77 -0.09 -1.76 16 13 C -0.14 -5.11 9.00 22.24 0.20 -4.91 16 14 C -0.12 -3.52 10.00 22.16 0.22 -3.29 16 15 C -0.12 -3.24 9.97 22.47 0.22 -3.02 16 16 C -0.12 -4.04 5.98 -19.33 -0.12 -4.16 16 17 C -0.09 -3.63 5.59 22.56 0.13 -3.50 16 18 S -0.19 -7.54 19.46 -56.49 -1.10 -8.64 16 19 C -0.10 -2.50 7.60 72.37 0.55 -1.95 16 20 C -0.07 -1.77 6.27 30.29 0.19 -1.58 16 21 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 22 H 0.06 3.55 6.05 -2.39 -0.01 3.53 16 23 H 0.03 1.49 6.15 -2.39 -0.01 1.47 16 24 H 0.03 1.32 7.75 -2.39 -0.02 1.30 16 25 H 0.06 3.25 6.09 -2.39 -0.01 3.24 16 26 H 0.03 1.33 7.27 -2.38 -0.02 1.32 16 27 H 0.26 14.07 8.31 -92.71 -0.77 13.29 16 28 H 0.13 4.70 5.93 -2.91 -0.02 4.68 16 29 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 30 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 31 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.13 2.69 8.14 -2.38 -0.02 2.67 16 33 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -63.97 277.49 5.18 -58.79 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 1.09 Total: 9.45 kcal Atomic # 6 Polarization: -58.36 SS G_CDS: 2.96 Total: -55.40 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 0.20 Total: -51.39 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: -7.54 SS G_CDS: -1.10 Total: -8.64 kcal Total: -63.97 5.18 -58.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260011665.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.256 kcal (2) G-P(sol) polarization free energy of solvation -63.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds