Wall clock time and date at job start Mon Mar 30 2020 06:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86794 * 120.00132 * 2 1 4 4 H 1.48505 * 109.47365 * 270.00207 * 3 2 1 5 5 H 1.48504 * 109.47275 * 30.00223 * 3 2 1 6 6 H 1.48500 * 109.47373 * 150.00160 * 3 2 1 7 7 C 1.38652 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00655 * 359.97438 * 7 2 1 9 9 O 1.34834 * 120.00189 * 179.97438 * 7 2 1 10 10 C 1.35746 * 117.00340 * 185.05311 * 9 7 2 11 11 C 1.38882 * 120.07145 * 174.73672 * 10 9 7 12 12 C 1.38099 * 119.93206 * 180.25590 * 11 10 9 13 13 C 1.38295 * 120.06865 * 359.47410 * 12 11 10 14 14 C 1.50701 * 119.93297 * 180.25412 * 13 12 11 15 15 H 1.09005 * 109.51799 * 359.87534 * 14 13 12 16 16 C 1.53175 * 109.52152 * 239.68650 * 14 13 12 17 17 C 1.53183 * 109.03485 * 183.11429 * 16 14 13 18 18 C 1.53092 * 109.16417 * 56.97585 * 17 16 14 19 19 O 1.42898 * 109.41488 * 302.39203 * 18 17 16 20 20 C 1.42908 * 114.09571 * 61.16194 * 19 18 17 21 21 C 1.38308 * 120.13808 * 0.27516 * 13 12 11 22 22 C 1.38100 * 120.06790 * 359.97438 * 21 13 12 23 23 H 0.96997 * 119.99989 * 359.97438 * 1 2 3 24 24 H 1.08002 * 120.03090 * 0.02562 * 11 10 9 25 25 H 1.08000 * 119.96243 * 179.74600 * 12 11 10 26 26 H 1.09001 * 109.54493 * 302.97310 * 16 14 13 27 27 H 1.08993 * 109.54753 * 63.24593 * 16 14 13 28 28 H 1.09007 * 109.52020 * 297.07259 * 17 16 14 29 29 H 1.08995 * 109.52351 * 176.88686 * 17 16 14 30 30 H 1.08998 * 109.47866 * 182.40801 * 18 17 16 31 31 H 1.08997 * 109.47922 * 62.37620 * 18 17 16 32 32 H 1.09007 * 109.47394 * 178.85589 * 20 19 18 33 33 H 1.08999 * 109.49223 * 58.82665 * 20 19 18 34 34 H 1.07997 * 119.96346 * 180.02562 * 21 13 12 35 35 H 1.07996 * 120.03027 * 180.02562 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4689 -2.1362 -0.0005 9 8 3.3572 -1.2009 -0.0011 10 6 3.9734 -2.4057 -0.1081 11 6 5.3556 -2.4724 -0.2252 12 6 5.9791 -3.6993 -0.3393 13 6 5.2295 -4.8614 -0.3260 14 6 5.9135 -6.1989 -0.4449 15 1 6.9898 -6.0509 -0.5339 16 6 5.3920 -6.9322 -1.6845 17 6 6.0360 -8.3204 -1.7516 18 6 5.7316 -9.0787 -0.4570 19 8 6.2154 -8.3278 0.6583 20 6 5.6138 -7.0392 0.7992 21 6 3.8532 -4.7986 -0.2043 22 6 3.2234 -3.5744 -0.0950 23 1 -0.4850 0.8400 0.0004 24 1 5.9420 -1.5654 -0.2308 25 1 7.0536 -3.7516 -0.4345 26 1 4.3089 -7.0356 -1.6183 27 1 5.6516 -6.3662 -2.5791 28 1 7.1149 -8.2163 -1.8677 29 1 5.6289 -8.8702 -2.6002 30 1 6.2233 -10.0512 -0.4813 31 1 4.6548 -9.2179 -0.3619 32 1 6.0207 -6.5425 1.6801 33 1 4.5354 -7.1516 0.9108 34 1 3.2706 -5.7079 -0.1938 35 1 2.1487 -3.5261 0.0004 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260031608.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:18 Heat of formation + Delta-G solvation = -80.007587 kcal Electronic energy + Delta-G solvation = -17587.744010 eV Core-core repulsion = 14743.157428 eV Total energy + Delta-G solvation = -2844.586582 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.17011 -40.18675 -38.31715 -34.93237 -34.34389 -32.74323 -31.83371 -29.48940 -27.17295 -25.89039 -24.59096 -23.76630 -22.21248 -20.71723 -19.81875 -19.14827 -17.29460 -17.01735 -16.62352 -16.15134 -15.85654 -15.69404 -15.52070 -15.40038 -14.76508 -14.52911 -14.33136 -14.08670 -13.68547 -13.46587 -13.16967 -12.84809 -12.53560 -12.50459 -12.13256 -12.03743 -11.95521 -11.49241 -11.33004 -11.15871 -10.89156 -10.40263 -9.82374 -8.97132 -8.51064 -6.23726 0.54481 0.61528 1.30958 1.34878 1.51423 2.27337 2.73875 2.97335 3.03164 3.15299 3.79620 3.83520 4.03445 4.11916 4.12830 4.19165 4.27679 4.40243 4.56127 4.56388 4.68412 4.73607 4.84857 4.91365 4.96502 5.03006 5.12863 5.24828 5.26594 5.34411 5.42200 5.57910 5.74658 5.81254 5.89413 6.20843 6.30169 6.83336 7.57766 8.60596 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.050355 B = 0.004514 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.922220 B = 6201.037271 C = 6424.901822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.401 4.401 8 H 0.080 0.920 9 O -0.245 6.245 10 C 0.116 3.884 11 C -0.189 4.189 12 C -0.064 4.064 13 C -0.143 4.143 14 C -0.060 4.060 15 H 0.091 0.909 16 C -0.117 4.117 17 C -0.149 4.149 18 C 0.051 3.949 19 O -0.399 6.399 20 C 0.069 3.931 21 C -0.067 4.067 22 C -0.234 4.234 23 H 0.285 0.715 24 H 0.129 0.871 25 H 0.154 0.846 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.050 0.950 34 H 0.130 0.870 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.318 -14.691 -2.467 19.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.477 4.477 8 H 0.098 0.902 9 O -0.153 6.153 10 C 0.068 3.932 11 C -0.208 4.208 12 C -0.082 4.082 13 C -0.143 4.143 14 C -0.079 4.079 15 H 0.109 0.891 16 C -0.154 4.154 17 C -0.187 4.187 18 C -0.025 4.025 19 O -0.318 6.318 20 C -0.008 4.008 21 C -0.085 4.085 22 C -0.254 4.254 23 H 0.094 0.906 24 H 0.147 0.853 25 H 0.172 0.828 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.127 0.873 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.068 0.932 34 H 0.148 0.852 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 13.350 -14.429 -2.318 19.794 hybrid contribution -0.880 0.969 -0.136 1.316 sum 12.471 -13.460 -2.454 18.512 Atomic orbital electron populations 1.69730 1.06918 1.29617 1.50168 1.25281 0.95876 1.02165 0.95491 0.85212 0.78791 0.77379 0.79295 1.19046 1.19178 1.18717 1.20712 0.78148 0.96117 1.52706 0.90201 1.83514 1.21194 1.27465 1.83137 1.19699 0.93269 0.85084 0.95190 1.20528 0.90519 0.99825 1.09973 1.21007 1.00402 0.90029 0.96779 1.19597 0.92831 0.95086 1.06819 1.20554 1.00356 0.90798 0.96162 0.89068 1.21695 1.00283 0.96062 0.97396 1.22177 1.01959 0.95782 0.98750 1.22791 0.99280 0.95228 0.85201 1.87905 1.66095 1.28845 1.48986 1.22669 0.97550 0.82950 0.97616 1.20822 0.94664 0.95892 0.97127 1.21265 1.00142 0.93212 1.10754 0.90561 0.85297 0.82834 0.92143 0.91409 0.90776 0.89256 0.87281 0.92971 0.88796 0.93219 0.85214 0.87514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.37 13.96 21.61 0.30 -55.06 16 2 C 0.01 0.59 5.49 84.83 0.47 1.06 16 3 Si 0.97 45.54 28.62 68.60 1.96 47.50 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.26 -12.30 7.11 99.48 0.71 -11.60 16 7 C -0.40 -23.75 9.95 67.92 0.68 -23.07 16 8 H 0.08 4.96 5.44 -2.91 -0.02 4.95 16 9 O -0.25 -13.40 8.59 -22.74 -0.20 -13.59 16 10 C 0.12 5.44 6.65 22.58 0.15 5.59 16 11 C -0.19 -7.14 9.99 22.39 0.22 -6.92 16 12 C -0.06 -1.92 9.66 22.25 0.21 -1.71 16 13 C -0.14 -4.14 4.79 -19.83 -0.10 -4.23 16 14 C -0.06 -1.34 2.56 -11.45 -0.03 -1.37 16 15 H 0.09 1.87 7.87 -2.38 -0.02 1.85 16 16 C -0.12 -2.33 5.16 30.71 0.16 -2.17 16 17 C -0.15 -2.30 6.14 30.69 0.19 -2.12 16 18 C 0.05 0.85 6.84 72.01 0.49 1.34 16 19 O -0.40 -8.92 10.77 -148.98 -1.60 -10.52 16 20 C 0.07 1.54 5.98 72.01 0.43 1.97 16 21 C -0.07 -2.28 8.65 22.25 0.19 -2.08 16 22 C -0.23 -10.27 9.17 22.39 0.21 -10.06 16 23 H 0.28 15.64 8.31 -92.71 -0.77 14.86 16 24 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 25 H 0.15 3.41 7.94 -2.91 -0.02 3.39 16 26 H 0.06 1.27 7.28 -2.39 -0.02 1.25 16 27 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 1.11 8.14 -2.38 -0.02 1.10 16 29 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 33 H 0.05 1.13 7.31 -2.39 -0.02 1.11 16 34 H 0.13 3.77 7.04 -2.91 -0.02 3.75 16 35 H 0.11 5.17 5.64 -2.91 -0.02 5.16 16 Total: -1.00 -65.55 288.03 4.82 -60.73 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 1.08 Total: 14.71 kcal Atomic # 6 Polarization: -47.04 SS G_CDS: 3.27 Total: -43.77 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: 0.30 Total: -55.06 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -1.80 Total: -24.12 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.96 Total: 47.50 kcal Total: -65.55 4.82 -60.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260031608.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.278 kcal (2) G-P(sol) polarization free energy of solvation -65.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds