Wall clock time and date at job start Mon Mar 30 2020 06:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99555 * 2 1 4 4 H 1.48493 * 109.46844 * 270.00066 * 3 2 1 5 5 H 1.48501 * 109.47198 * 30.00071 * 3 2 1 6 6 H 1.48502 * 109.46957 * 149.99973 * 3 2 1 7 7 C 1.37871 * 120.00383 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99925 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99920 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47072 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47310 * 305.00453 * 10 9 7 12 12 N 1.46905 * 109.47027 * 65.00245 * 10 9 7 13 13 C 1.50703 * 109.47072 * 185.00098 * 10 9 7 14 14 C 1.38836 * 119.68285 * 264.72708 * 13 10 9 15 15 C 1.36599 * 120.54475 * 179.69698 * 14 13 10 16 16 C 1.39706 * 119.80518 * 0.59373 * 15 14 13 17 17 C 1.46484 * 134.00374 * 179.70949 * 16 15 14 18 18 C 1.34253 * 107.00531 * 179.97438 * 17 16 15 19 19 N 1.36793 * 109.92338 * 0.02562 * 18 17 16 20 20 H 0.97003 * 125.07060 * 179.97438 * 19 18 17 21 21 C 1.37775 * 109.85955 * 359.97438 * 19 18 17 22 22 C 1.37935 * 119.67760 * 85.00186 * 13 10 9 23 23 F 1.35096 * 120.13535 * 0.02562 * 22 13 10 24 24 H 0.96999 * 120.00227 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46854 * 60.00360 * 9 7 2 26 26 H 1.09002 * 109.47338 * 300.00068 * 9 7 2 27 27 H 1.00901 * 110.99869 * 296.04819 * 12 10 9 28 28 H 1.00896 * 110.99543 * 59.99942 * 12 10 9 29 29 H 1.07998 * 119.72749 * 0.02562 * 14 13 10 30 30 H 1.08004 * 120.09816 * 180.27746 * 15 14 13 31 31 H 1.07994 * 126.49569 * 359.94690 * 17 16 15 32 32 H 1.07999 * 125.03405 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6528 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 1 2.9296 -3.5558 -0.8391 12 7 3.0085 -3.6526 1.2580 13 6 1.4961 -4.9637 -0.1200 14 6 1.1706 -5.6801 1.0239 15 6 0.4863 -6.8589 0.9335 16 6 0.1211 -7.3555 -0.3202 17 6 -0.5908 -8.5532 -0.7724 18 6 -0.6462 -8.4945 -2.1125 19 7 -0.0276 -7.3576 -2.5552 20 1 0.0599 -7.0968 -3.4855 21 6 0.4529 -6.6382 -1.4829 22 6 1.1453 -5.4348 -1.3680 23 9 1.4726 -4.7325 -2.4747 24 1 -0.4850 0.8400 -0.0004 25 1 0.6242 -2.5575 -0.8880 26 1 0.6248 -2.5563 0.8920 27 1 3.5701 -2.8178 1.3336 28 1 2.3962 -3.7498 2.0540 29 1 1.4561 -5.2996 1.9935 30 1 0.2329 -7.4080 1.8284 31 1 -0.9942 -9.3353 -0.1464 32 1 -1.1103 -9.2351 -2.7468 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260034901.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:30 Heat of formation + Delta-G solvation = 3.186329 kcal Electronic energy + Delta-G solvation = -17487.825212 eV Core-core repulsion = 14555.678635 eV Total energy + Delta-G solvation = -2932.146577 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.34753 -40.93641 -37.56295 -34.68286 -32.40030 -31.23052 -29.05871 -28.63228 -27.79794 -24.33631 -22.52904 -21.88075 -20.57256 -19.60656 -18.14818 -16.90998 -16.53011 -15.48339 -15.32242 -15.00688 -14.65823 -14.55137 -13.81061 -13.68229 -13.29855 -13.15078 -12.62176 -12.36026 -12.15914 -11.82587 -11.34099 -11.24942 -11.06627 -10.84574 -10.56619 -10.25893 -9.91371 -9.30753 -9.14914 -8.45052 -8.05956 -7.76244 -7.32058 -6.05975 -4.10549 1.29243 1.82687 2.78067 3.16443 3.28742 3.35247 3.37729 4.08200 4.40644 4.64751 4.84166 4.96963 5.25838 5.30668 5.42163 5.50418 5.59002 5.78847 5.95326 6.02443 6.35394 6.40062 6.67552 6.73421 6.79214 6.87365 6.96031 7.36826 7.49098 7.56099 7.59443 7.87632 8.04694 8.21932 8.34183 8.95766 9.54298 11.04782 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.036997 B = 0.005588 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.642871 B = 5009.837812 C = 5288.028987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.003 3.997 10 C 0.128 3.872 11 H 0.080 0.920 12 N -0.838 5.838 13 C -0.061 4.061 14 C -0.103 4.103 15 C -0.087 4.087 16 C -0.098 4.098 17 C -0.205 4.205 18 C 0.047 3.953 19 N -0.592 5.592 20 H 0.416 0.584 21 C 0.065 3.935 22 C 0.081 3.919 23 F -0.140 7.140 24 H 0.261 0.739 25 H 0.020 0.980 26 H 0.019 0.981 27 H 0.348 0.652 28 H 0.330 0.670 29 H 0.133 0.867 30 H 0.124 0.876 31 H 0.146 0.854 32 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.671 -15.688 -1.550 15.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.036 4.036 10 C 0.017 3.983 11 H 0.098 0.902 12 N -0.367 5.367 13 C -0.063 4.063 14 C -0.122 4.122 15 C -0.106 4.106 16 C -0.102 4.102 17 C -0.231 4.231 18 C -0.080 4.080 19 N -0.195 5.195 20 H 0.252 0.748 21 C -0.042 4.042 22 C 0.058 3.942 23 F -0.119 7.119 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.037 0.963 27 H 0.162 0.838 28 H 0.142 0.858 29 H 0.151 0.849 30 H 0.142 0.858 31 H 0.164 0.836 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.452 -16.186 -2.007 16.316 hybrid contribution -0.212 2.094 -0.584 2.185 sum -0.664 -14.092 -2.590 14.343 Atomic orbital electron populations 1.69975 1.06125 1.26730 1.50146 1.25013 0.94819 0.99301 0.95057 0.86574 0.79812 0.83341 0.78165 1.20649 1.21241 1.19746 1.21139 0.92894 0.90725 1.51500 0.92454 1.19772 0.94354 0.91495 0.97955 1.20418 0.94730 0.89959 0.93216 0.90204 1.59271 1.27864 1.45935 1.03662 1.19933 0.98472 0.97464 0.90470 1.20367 0.99028 0.94595 0.98210 1.20255 0.98694 0.96234 0.95428 1.19012 1.03238 0.96038 0.91954 1.21623 1.08187 0.99586 0.93674 1.21763 1.00285 0.90323 0.95621 1.41678 1.50262 1.19707 1.07872 0.74768 1.18133 1.02956 0.94608 0.88539 1.16422 1.04432 0.89995 0.83318 1.91456 1.91051 1.78260 1.51109 0.92909 0.96169 0.96294 0.83812 0.85817 0.84916 0.85806 0.83616 0.81395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -14.46 8.55 -34.44 -0.29 -14.75 16 8 H 0.06 1.52 7.14 -52.49 -0.38 1.14 16 9 C 0.00 0.07 4.60 -27.88 -0.13 -0.06 16 10 C 0.13 2.75 2.75 -68.86 -0.19 2.56 16 11 H 0.08 1.81 7.76 -51.93 -0.40 1.40 16 12 N -0.84 -15.79 8.78 -5.65 -0.05 -15.84 16 13 C -0.06 -1.19 5.07 -104.51 -0.53 -1.72 16 14 C -0.10 -1.74 9.19 -39.95 -0.37 -2.11 16 15 C -0.09 -1.32 10.05 -39.63 -0.40 -1.72 16 16 C -0.10 -1.52 6.37 -105.14 -0.67 -2.19 16 17 C -0.21 -2.51 11.08 -37.67 -0.42 -2.93 16 18 C 0.05 0.50 11.82 -16.74 -0.20 0.30 16 19 N -0.59 -7.68 6.07 -10.61 -0.06 -7.74 16 20 H 0.42 4.38 8.96 -40.82 -0.37 4.02 16 21 C 0.06 1.09 7.26 -83.91 -0.61 0.48 16 22 C 0.08 1.55 7.26 -39.29 -0.29 1.27 16 23 F -0.14 -2.84 16.54 2.25 0.04 -2.80 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.35 6.67 7.90 -39.29 -0.31 6.36 16 28 H 0.33 5.79 7.18 -39.29 -0.28 5.51 16 29 H 0.13 2.04 6.24 -52.49 -0.33 1.71 16 30 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 31 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 278.94 15.07 4.20 4.20 Total: -1.00 -31.91 278.94 -7.65 -39.57 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -3.31 Total: 11.44 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -4.18 Total: -19.26 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.62 Total: -49.58 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.04 Total: -2.80 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.91 -7.65 -39.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260034901.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.754 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds