Wall clock time and date at job start Mon Mar 30 2020 06:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47231 * 2 1 4 4 C 1.50698 * 109.47011 * 180.02562 * 3 2 1 5 5 N 1.30105 * 124.97940 * 270.31651 * 4 3 2 6 6 C 1.35894 * 109.74245 * 180.13938 * 5 4 3 7 7 C 1.39685 * 133.47151 * 179.87903 * 6 5 4 8 8 C 1.37928 * 119.75574 * 179.69105 * 7 6 5 9 9 F 1.35095 * 119.77007 * 180.02562 * 8 7 6 10 10 C 1.38918 * 120.45983 * 359.97319 * 8 7 6 11 11 C 1.37935 * 120.41689 * 0.02562 * 10 8 7 12 12 C 1.38707 * 119.86686 * 0.04096 * 11 10 8 13 13 N 1.36530 * 124.98190 * 90.00155 * 4 3 2 14 14 C 1.37299 * 126.40002 * 359.97438 * 13 4 3 15 15 H 1.08003 * 119.99744 * 320.52870 * 14 13 4 16 16 C 1.38906 * 119.99918 * 140.53707 * 14 13 4 17 17 N 1.31379 * 119.99847 * 156.39840 * 16 14 13 18 18 Si 1.86801 * 120.00068 * 336.39519 * 16 14 13 19 19 H 1.48494 * 109.46913 * 95.40650 * 18 16 14 20 20 H 1.48496 * 109.47238 * 215.41109 * 18 16 14 21 21 H 1.48499 * 109.46961 * 335.41326 * 18 16 14 22 22 H 1.09004 * 109.47043 * 59.99912 * 1 2 3 23 23 H 1.09001 * 109.47227 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47239 * 300.00124 * 1 2 3 25 25 H 1.09005 * 109.47168 * 240.00589 * 2 1 3 26 26 H 1.08989 * 109.47465 * 120.00281 * 2 1 3 27 27 H 1.08991 * 109.46619 * 59.99969 * 3 2 1 28 28 H 1.08998 * 109.46773 * 299.99988 * 3 2 1 29 29 H 1.07995 * 120.12216 * 359.66163 * 7 6 5 30 30 H 1.08007 * 119.79178 * 180.02562 * 10 8 7 31 31 H 1.08001 * 120.06861 * 180.02562 * 11 10 8 32 32 H 0.97006 * 119.99911 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.2933 1.4364 1.0651 6 6 5.6043 1.4415 0.7074 7 6 6.7983 1.4409 1.4324 8 6 8.0049 1.4408 0.7642 9 9 9.1598 1.4396 1.4651 10 6 8.0409 1.4408 -0.6245 11 6 6.8698 1.4414 -1.3534 12 6 5.6478 1.4429 -0.6972 13 7 4.3293 1.4427 -1.1196 14 6 3.8904 1.4424 -2.4206 15 1 3.0338 0.8475 -2.7013 16 6 4.5481 2.2071 -3.3756 17 7 4.4638 1.8855 -4.6466 18 14 5.5525 3.6928 -2.8527 19 1 6.9779 3.3014 -2.7105 20 1 5.4318 4.7584 -3.8799 21 1 5.0463 4.1996 -1.5519 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 1.6767 1.9563 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 6.7767 1.4409 2.5121 30 1 8.9918 1.4403 -1.1367 31 1 6.9044 1.4410 -2.4329 32 1 4.9228 2.4198 -5.3136 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260035177.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:17 Heat of formation + Delta-G solvation = 10.026926 kcal Electronic energy + Delta-G solvation = -17851.342364 eV Core-core repulsion = 14919.492418 eV Total energy + Delta-G solvation = -2931.849946 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.25788 -41.26077 -36.51644 -34.41198 -34.10863 -31.99382 -29.48201 -29.08982 -26.40248 -25.29085 -22.17334 -21.63023 -21.03169 -19.36970 -18.29083 -17.21840 -16.09864 -15.63990 -15.09709 -14.89240 -14.55903 -14.32083 -13.97704 -13.52499 -13.41326 -13.00912 -12.79712 -12.49267 -12.14380 -11.74310 -11.38433 -11.35270 -11.20223 -10.94450 -10.62241 -10.46866 -10.30174 -10.10921 -9.99694 -9.13009 -8.92496 -7.46823 -7.40074 -7.04741 -4.70380 1.57370 2.12110 2.87846 3.02132 3.13100 3.57838 3.78831 3.99959 4.44241 4.58078 4.68745 5.13045 5.35818 5.38172 5.42764 5.56547 5.72332 5.89573 6.03841 6.07982 6.14416 6.15703 6.25681 6.28184 6.41437 6.61120 6.65217 6.69309 6.82444 6.96666 7.31567 7.41912 7.66177 7.84207 8.43502 8.86382 8.97276 10.00653 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.017374 B = 0.010687 C = 0.007197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.214588 B = 2619.266779 C = 3889.729649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.028 4.028 4 C 0.233 3.767 5 N -0.521 5.521 6 C 0.060 3.940 7 C -0.113 4.113 8 C 0.071 3.929 9 F -0.151 7.151 10 C -0.173 4.173 11 C -0.057 4.057 12 C -0.004 4.004 13 N -0.297 5.297 14 C -0.357 4.357 15 H 0.124 0.876 16 C 0.086 3.914 17 N -0.818 5.818 18 Si 0.863 3.137 19 H -0.245 1.245 20 H -0.278 1.278 21 H -0.257 1.257 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.857 -0.278 4.400 4.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.067 4.067 4 C -0.029 4.029 5 N -0.242 5.242 6 C -0.066 4.066 7 C -0.134 4.134 8 C 0.049 3.951 9 F -0.130 7.130 10 C -0.194 4.194 11 C -0.077 4.077 12 C -0.118 4.118 13 N 0.032 4.968 14 C -0.485 4.485 15 H 0.141 0.859 16 C -0.129 4.129 17 N -0.447 5.447 18 Si 0.687 3.313 19 H -0.170 1.170 20 H -0.204 1.204 21 H -0.181 1.181 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.204 -0.259 4.802 4.958 hybrid contribution 1.002 0.766 -0.823 1.507 sum -0.202 0.508 3.979 4.016 Atomic orbital electron populations 1.21746 0.95742 1.01334 1.01708 1.21454 0.95337 0.96192 1.02584 1.19948 0.85247 0.97914 1.03547 1.23458 0.95103 1.02953 0.81350 1.70233 0.99975 1.26149 1.27885 1.18459 0.91830 1.06304 0.90009 1.19761 0.88574 1.05701 0.99349 1.17047 0.80780 1.07907 0.89357 1.91404 1.47642 1.94713 1.79272 1.20494 0.98208 1.08942 0.91789 1.19926 0.89041 0.98969 0.99743 1.18952 0.86856 1.11218 0.94804 1.41514 1.02373 1.46254 1.06616 1.19280 1.18436 1.30904 0.79851 0.85859 1.25380 0.95501 0.97405 0.94594 1.69759 1.37586 1.36072 1.01247 0.87098 0.82068 0.82136 0.80039 1.16959 1.20354 1.18115 0.92605 0.92958 0.92830 0.91696 0.91775 0.89782 0.89625 0.85439 0.85389 0.85394 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 37.16 0.37 -1.45 16 2 C -0.12 -1.82 5.92 -26.73 -0.16 -1.98 16 3 C -0.03 -0.49 5.49 -27.88 -0.15 -0.64 16 4 C 0.23 5.19 7.08 -154.37 -1.09 4.10 16 5 N -0.52 -12.08 11.27 -8.11 -0.09 -12.17 16 6 C 0.06 1.39 7.22 -84.66 -0.61 0.78 16 7 C -0.11 -2.33 10.07 -39.15 -0.39 -2.72 16 8 C 0.07 1.39 7.28 -39.44 -0.29 1.11 16 9 F -0.15 -2.76 17.26 2.25 0.04 -2.72 16 10 C -0.17 -3.39 10.01 -39.44 -0.39 -3.78 16 11 C -0.06 -1.25 6.90 -39.52 -0.27 -1.53 16 12 C 0.00 -0.09 5.27 -83.84 -0.44 -0.54 16 13 N -0.30 -7.19 2.44 -56.63 -0.14 -7.33 16 14 C -0.36 -8.91 9.69 -14.86 -0.14 -9.06 16 15 H 0.12 3.13 8.06 -52.48 -0.42 2.71 16 16 C 0.09 2.14 4.91 -17.50 -0.09 2.05 16 17 N -0.82 -20.65 13.95 55.49 0.77 -19.88 16 18 Si 0.86 19.61 24.50 -169.99 -4.16 15.45 16 19 H -0.25 -5.30 5.50 56.52 0.31 -4.99 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.26 -6.29 7.11 56.52 0.40 -5.89 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.09 1.50 7.79 -51.93 -0.40 1.09 16 29 H 0.13 2.34 8.06 -52.49 -0.42 1.92 16 30 H 0.13 2.13 8.06 -52.48 -0.42 1.71 16 31 H 0.13 2.82 5.80 -52.49 -0.30 2.52 16 32 H 0.29 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 273.82 15.07 4.13 4.13 Total: -1.00 -26.88 273.82 -6.86 -33.74 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -3.74 Total: 2.45 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -3.67 Total: -13.66 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.54 Total: -39.38 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.04 Total: -2.72 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.16 Total: 15.45 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -26.88 -6.86 -33.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260035177.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.770 kcal (2) G-P(sol) polarization free energy of solvation -26.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds