Wall clock time and date at job start Mon Mar 30 2020 06:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47231 * 2 1 4 4 C 1.50698 * 109.47011 * 180.02562 * 3 2 1 5 5 N 1.30105 * 124.97940 * 270.31651 * 4 3 2 6 6 C 1.35894 * 109.74245 * 180.13938 * 5 4 3 7 7 C 1.39685 * 133.47151 * 179.87903 * 6 5 4 8 8 C 1.37928 * 119.75574 * 179.69105 * 7 6 5 9 9 F 1.35095 * 119.77007 * 180.02562 * 8 7 6 10 10 C 1.38918 * 120.45983 * 359.97319 * 8 7 6 11 11 C 1.37935 * 120.41689 * 0.02562 * 10 8 7 12 12 C 1.38707 * 119.86686 * 0.04096 * 11 10 8 13 13 N 1.36530 * 124.98190 * 90.00155 * 4 3 2 14 14 C 1.37299 * 126.40002 * 359.97438 * 13 4 3 15 15 H 1.08003 * 119.99744 * 320.52870 * 14 13 4 16 16 C 1.38906 * 119.99918 * 140.53707 * 14 13 4 17 17 N 1.31379 * 119.99847 * 156.39840 * 16 14 13 18 18 Si 1.86801 * 120.00068 * 336.39519 * 16 14 13 19 19 H 1.48494 * 109.46913 * 95.40650 * 18 16 14 20 20 H 1.48496 * 109.47238 * 215.41109 * 18 16 14 21 21 H 1.48499 * 109.46961 * 335.41326 * 18 16 14 22 22 H 1.09004 * 109.47043 * 59.99912 * 1 2 3 23 23 H 1.09001 * 109.47227 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47239 * 300.00124 * 1 2 3 25 25 H 1.09005 * 109.47168 * 240.00589 * 2 1 3 26 26 H 1.08989 * 109.47465 * 120.00281 * 2 1 3 27 27 H 1.08991 * 109.46619 * 59.99969 * 3 2 1 28 28 H 1.08998 * 109.46773 * 299.99988 * 3 2 1 29 29 H 1.07995 * 120.12216 * 359.66163 * 7 6 5 30 30 H 1.08007 * 119.79178 * 180.02562 * 10 8 7 31 31 H 1.08001 * 120.06861 * 180.02562 * 11 10 8 32 32 H 0.97006 * 119.99911 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.2933 1.4364 1.0651 6 6 5.6043 1.4415 0.7074 7 6 6.7983 1.4409 1.4324 8 6 8.0049 1.4408 0.7642 9 9 9.1598 1.4396 1.4651 10 6 8.0409 1.4408 -0.6245 11 6 6.8698 1.4414 -1.3534 12 6 5.6478 1.4429 -0.6972 13 7 4.3293 1.4427 -1.1196 14 6 3.8904 1.4424 -2.4206 15 1 3.0338 0.8475 -2.7013 16 6 4.5481 2.2071 -3.3756 17 7 4.4638 1.8855 -4.6466 18 14 5.5525 3.6928 -2.8527 19 1 6.9779 3.3014 -2.7105 20 1 5.4318 4.7584 -3.8799 21 1 5.0463 4.1996 -1.5519 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 1.6767 1.9563 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 6.7767 1.4409 2.5121 30 1 8.9918 1.4403 -1.1367 31 1 6.9044 1.4410 -2.4329 32 1 4.9228 2.4198 -5.3136 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260035177.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:17 Heat of formation + Delta-G solvation = -3.548008 kcal Electronic energy + Delta-G solvation = -17851.931018 eV Core-core repulsion = 14919.492418 eV Total energy + Delta-G solvation = -2932.438600 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.78480 -42.99136 -38.14829 -36.11611 -35.54553 -33.81820 -31.15705 -30.58160 -27.86080 -27.12244 -23.67103 -23.32413 -22.46460 -21.07889 -20.07324 -18.86068 -17.83202 -17.25796 -16.74206 -16.50391 -16.04005 -15.91649 -15.57722 -15.12731 -14.94997 -14.80076 -14.19400 -14.03073 -13.80831 -13.16612 -13.08454 -12.90997 -12.59597 -12.32002 -12.25295 -12.11962 -11.86585 -11.66472 -11.56445 -10.91590 -10.74096 -9.17862 -9.09544 -8.92540 -6.61407 -0.09276 0.44874 1.08897 1.19195 1.29284 1.83911 1.96121 2.27333 2.67631 2.79525 3.06979 3.53090 3.78137 4.04939 4.12221 4.19056 4.29683 4.38493 4.51446 4.60532 4.69528 4.80510 4.89613 5.01897 5.04749 5.14252 5.20336 5.23903 5.31032 5.46147 5.58708 5.72736 5.91251 6.01126 6.56731 7.07078 7.18827 8.17366 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.017374 B = 0.010687 C = 0.007197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.214588 B = 2619.266779 C = 3889.729649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C -0.028 4.028 4 C 0.230 3.770 5 N -0.534 5.534 6 C 0.037 3.963 7 C -0.114 4.114 8 C 0.080 3.920 9 F -0.138 7.138 10 C -0.154 4.154 11 C -0.080 4.080 12 C -0.025 4.025 13 N -0.317 5.317 14 C -0.368 4.368 15 H 0.106 0.894 16 C 0.064 3.936 17 N -0.848 5.848 18 Si 0.903 3.097 19 H -0.227 1.227 20 H -0.267 1.267 21 H -0.286 1.286 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.060 0.940 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.149 0.851 30 H 0.163 0.837 31 H 0.125 0.875 32 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.025 -0.008 5.376 5.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.148 4.148 3 C -0.067 4.067 4 C -0.032 4.032 5 N -0.256 5.256 6 C -0.087 4.087 7 C -0.135 4.135 8 C 0.058 3.942 9 F -0.117 7.117 10 C -0.175 4.175 11 C -0.100 4.100 12 C -0.139 4.139 13 N 0.011 4.989 14 C -0.495 4.495 15 H 0.124 0.876 16 C -0.148 4.148 17 N -0.478 5.478 18 Si 0.726 3.274 19 H -0.150 1.150 20 H -0.192 1.192 21 H -0.211 1.211 22 H 0.076 0.924 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.123 0.877 28 H 0.102 0.898 29 H 0.167 0.833 30 H 0.181 0.819 31 H 0.143 0.857 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.346 0.005 5.774 5.784 hybrid contribution 0.810 0.630 -0.983 1.421 sum 0.464 0.636 4.791 4.855 Atomic orbital electron populations 1.21697 0.92806 1.02610 1.02652 1.21380 0.97774 0.94366 1.01267 1.20169 0.82640 0.99519 1.04364 1.24322 0.96837 1.01222 0.80796 1.70247 1.00271 1.26910 1.28176 1.18880 0.92622 1.06994 0.90215 1.20019 0.88053 1.04911 1.00497 1.17019 0.80897 1.06837 0.89448 1.91446 1.46776 1.94495 1.78991 1.20863 0.98805 1.05991 0.91875 1.20045 0.89285 1.00822 0.99835 1.19389 0.87344 1.11639 0.95526 1.41598 1.02929 1.47786 1.06576 1.19136 1.18435 1.31263 0.80675 0.87599 1.25733 0.96125 0.98483 0.94484 1.69774 1.38989 1.37167 1.01853 0.86523 0.82192 0.80334 0.78361 1.15006 1.19194 1.21116 0.92381 0.91548 0.91154 0.93940 0.92117 0.87749 0.89823 0.83341 0.81911 0.85742 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.91 71.98 0.71 -2.50 16 2 C -0.11 -3.37 5.92 30.60 0.18 -3.19 16 3 C -0.03 -0.98 5.49 29.85 0.16 -0.82 16 4 C 0.23 10.34 7.08 137.76 0.98 11.31 16 5 N -0.53 -24.63 11.27 -179.56 -2.02 -26.66 16 6 C 0.04 1.71 7.22 39.42 0.28 2.00 16 7 C -0.11 -4.46 10.07 22.55 0.23 -4.24 16 8 C 0.08 2.90 7.28 22.36 0.16 3.06 16 9 F -0.14 -4.53 17.26 44.97 0.78 -3.76 16 10 C -0.15 -5.60 10.01 22.36 0.22 -5.38 16 11 C -0.08 -3.41 6.90 22.31 0.15 -3.26 16 12 C -0.03 -1.21 5.27 38.77 0.20 -1.01 16 13 N -0.32 -15.57 2.44 -333.09 -0.81 -16.38 16 14 C -0.37 -18.83 9.69 84.00 0.81 -18.02 16 15 H 0.11 5.63 8.06 -2.91 -0.02 5.61 16 16 C 0.06 3.23 4.91 84.92 0.42 3.65 16 17 N -0.85 -43.23 13.95 21.65 0.30 -42.93 16 18 Si 0.90 40.24 24.50 68.60 1.68 41.92 16 19 H -0.23 -9.31 5.50 99.48 0.55 -8.76 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 22 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 23 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 24 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 26 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 28 H 0.08 2.95 7.79 -2.39 -0.02 2.93 16 29 H 0.15 5.08 8.06 -2.91 -0.02 5.05 16 30 H 0.16 4.72 8.06 -2.91 -0.02 4.69 16 31 H 0.12 5.38 5.80 -2.91 -0.02 5.36 16 32 H 0.30 13.71 8.31 -92.70 -0.77 12.94 16 Total: -1.00 -57.11 273.82 5.41 -51.70 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.97 Total: 14.50 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 4.52 Total: -18.39 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -2.54 Total: -85.97 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.78 Total: -3.76 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 1.68 Total: 41.92 kcal Total: -57.11 5.41 -51.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260035177.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.149 kcal (2) G-P(sol) polarization free energy of solvation -57.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds