Wall clock time and date at job start Mon Mar 30 2020 06:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99720 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 C 1.50701 * 109.47098 * 239.99607 * 2 1 3 13 13 C 1.38254 * 120.00015 * 299.73253 * 12 2 1 14 14 C 1.38217 * 119.99741 * 179.76596 * 13 12 2 15 15 C 1.38258 * 120.00027 * 0.50628 * 14 13 12 16 16 C 1.38213 * 119.99641 * 359.74269 * 15 14 13 17 17 C 1.50701 * 119.99726 * 179.97438 * 16 15 14 18 18 C 1.53042 * 113.15021 * 40.57314 * 17 16 15 19 19 S 1.81496 * 89.86360 * 211.86595 * 18 17 16 20 20 C 1.53045 * 113.15183 * 300.14484 * 17 16 15 21 21 C 1.38208 * 119.99695 * 120.00007 * 12 2 1 22 22 H 1.09007 * 109.47140 * 60.00496 * 1 2 3 23 23 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47703 * 300.00645 * 1 2 3 25 25 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 26 26 H 1.08004 * 120.00246 * 359.97438 * 13 12 2 27 27 H 1.08002 * 120.00008 * 180.22291 * 14 13 12 28 28 H 1.07998 * 119.99685 * 179.72083 * 15 14 13 29 29 H 1.09000 * 112.49784 * 170.35321 * 17 16 15 30 30 H 1.09007 * 113.14770 * 327.10811 * 18 17 16 31 31 H 1.09000 * 113.15000 * 96.59260 * 18 17 16 32 32 H 1.08997 * 113.14533 * 263.40010 * 20 17 16 33 33 H 1.08994 * 113.14833 * 32.84437 * 20 17 16 34 34 H 1.07996 * 120.00483 * 0.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 1.8268 -0.4197 5.2204 10 1 1.8257 -2.5200 4.0079 11 1 3.8062 -1.1208 4.0082 12 6 2.0323 -0.7105 -1.2304 13 6 1.7029 -2.0357 -1.4463 14 6 2.1597 -2.6859 -2.5773 15 6 2.9546 -2.0141 -3.4873 16 6 3.2881 -0.6907 -3.2688 17 6 4.1551 0.0414 -4.2605 18 6 3.8113 -0.2842 -5.7158 19 16 5.5521 -0.0527 -6.1742 20 6 5.5323 -0.6002 -4.4447 21 6 2.8269 -0.0388 -2.1402 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 0.7088 1.1615 3.4843 26 1 1.0859 -2.5620 -0.7330 27 1 1.8994 -3.7202 -2.7478 28 1 3.3152 -2.5235 -4.3687 29 1 4.2042 1.1119 -4.0610 30 1 3.4641 -1.3081 -5.8553 31 1 3.1463 0.4482 -6.1732 32 1 6.3076 -0.1322 -3.8382 33 1 5.5173 -1.6849 -4.3380 34 1 3.0882 0.9950 -1.9692 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260041837.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:16 Heat of formation + Delta-G solvation = 29.767688 kcal Electronic energy + Delta-G solvation = -15462.419699 eV Core-core repulsion = 13065.346201 eV Total energy + Delta-G solvation = -2397.073498 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.34170 -36.53474 -34.07918 -31.37643 -30.14956 -28.10030 -26.33384 -25.15682 -23.59240 -22.06179 -21.10734 -18.75387 -16.95891 -16.19241 -15.94622 -15.43560 -14.78646 -14.37616 -13.80382 -13.40955 -13.28448 -13.05687 -12.83888 -12.43432 -11.95720 -11.79406 -11.48505 -11.14125 -10.97921 -10.94374 -10.78758 -10.68677 -10.38736 -10.19085 -9.97560 -9.39218 -9.06032 -8.40734 -8.23600 -7.89696 -7.83895 -6.04448 -4.11438 1.58534 1.85258 2.01131 2.04872 3.29016 3.33926 3.36694 4.18680 4.40398 4.64067 4.72008 4.88599 5.12206 5.23845 5.26514 5.33237 5.46864 5.54408 5.56536 5.83426 5.97717 6.10419 6.28153 6.51073 6.65190 6.81507 6.95519 7.02891 7.16653 7.17642 7.31682 7.63810 7.70220 7.93221 8.05766 8.35483 8.90892 9.53373 11.01151 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.036087 B = 0.004899 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.725257 B = 5713.876489 C = 5824.910070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.070 3.930 3 H 0.034 0.966 4 C -0.508 4.508 5 H 0.056 0.944 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.893 3.107 9 H -0.287 1.287 10 H -0.277 1.277 11 H -0.277 1.277 12 C -0.028 4.028 13 C -0.107 4.107 14 C -0.125 4.125 15 C -0.141 4.141 16 C -0.086 4.086 17 C -0.044 4.044 18 C -0.071 4.071 19 S -0.319 6.319 20 C -0.068 4.068 21 C -0.117 4.117 22 H 0.008 0.992 23 H 0.028 0.972 24 H 0.085 0.915 25 H 0.261 0.739 26 H 0.122 0.878 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.822 -3.197 -12.320 13.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.051 3.949 3 H 0.053 0.947 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.720 3.280 9 H -0.213 1.213 10 H -0.202 1.202 11 H -0.203 1.203 12 C -0.028 4.028 13 C -0.125 4.125 14 C -0.143 4.143 15 C -0.159 4.159 16 C -0.089 4.089 17 C -0.064 4.064 18 C -0.219 4.219 19 S -0.092 6.092 20 C -0.216 4.216 21 C -0.136 4.136 22 H 0.027 0.973 23 H 0.047 0.953 24 H 0.104 0.896 25 H 0.071 0.929 26 H 0.140 0.860 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.132 0.868 30 H 0.125 0.875 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.124 0.876 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.650 -2.680 -13.310 14.351 hybrid contribution -0.283 -0.840 1.690 1.908 sum 4.368 -3.519 -11.620 12.903 Atomic orbital electron populations 1.21786 0.97598 0.99284 1.00281 1.17907 0.92892 0.95459 0.88610 0.94745 1.21062 1.31319 1.12408 0.89855 0.92534 1.24954 0.95018 0.94978 0.98938 1.69875 1.36571 1.22810 1.23566 0.86643 0.79251 0.79782 0.82276 1.21266 1.20239 1.20269 1.20689 0.92740 0.93840 0.95516 1.21136 0.99951 0.94912 0.96526 1.21040 0.98870 0.99252 0.95125 1.20661 1.01237 0.94212 0.99801 1.19325 0.99568 0.94221 0.95768 1.21392 0.92077 1.00897 0.92047 1.24523 0.94489 1.05883 0.96968 1.88907 1.10938 1.88280 1.21081 1.24481 1.00496 1.04302 0.92333 1.21004 0.98887 0.99836 0.93835 0.97260 0.95288 0.89630 0.92864 0.86041 0.87029 0.87308 0.86768 0.87491 0.88509 0.88415 0.87584 0.86588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.78 37.16 0.33 -2.75 16 2 C 0.07 1.68 2.48 -92.93 -0.23 1.45 16 3 H 0.03 0.89 7.88 -51.93 -0.41 0.48 16 4 C -0.51 -13.43 8.24 -34.44 -0.28 -13.71 16 5 H 0.06 1.49 7.59 -52.49 -0.40 1.10 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.68 11.32 55.43 0.63 -24.05 16 8 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 12 C -0.03 -0.57 4.74 -104.63 -0.50 -1.06 16 13 C -0.11 -2.02 8.70 -39.58 -0.34 -2.36 16 14 C -0.12 -1.95 10.05 -39.58 -0.40 -2.35 16 15 C -0.14 -2.00 8.59 -39.58 -0.34 -2.34 16 16 C -0.09 -1.28 5.23 -104.62 -0.55 -1.82 16 17 C -0.04 -0.53 3.65 -91.73 -0.33 -0.87 16 18 C -0.07 -0.76 7.33 37.18 0.27 -0.49 16 19 S -0.32 -3.91 24.80 -107.50 -2.67 -6.58 16 20 C -0.07 -0.77 7.42 37.18 0.28 -0.50 16 21 C -0.12 -2.09 9.33 -39.59 -0.37 -2.46 16 22 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 23 H 0.03 0.64 7.41 -51.93 -0.38 0.26 16 24 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 25 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.12 2.34 7.59 -52.48 -0.40 1.94 16 27 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.11 1.27 6.63 -52.49 -0.35 0.92 16 29 H 0.11 1.34 8.07 -51.93 -0.42 0.92 16 30 H 0.11 1.08 6.40 -51.92 -0.33 0.75 16 31 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.11 1.15 7.59 -51.93 -0.39 0.76 16 34 H 0.12 1.98 7.93 -52.49 -0.42 1.56 16 LS Contribution 290.77 15.07 4.38 4.38 Total: -1.00 -27.37 290.77 -9.88 -37.25 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -4.64 Total: 0.91 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: -2.56 Total: -27.69 kcal Atomic # 7 Polarization: -24.68 SS G_CDS: 0.63 Total: -24.05 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: -3.91 SS G_CDS: -2.67 Total: -6.58 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.37 -9.88 -37.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260041837.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.016 kcal (2) G-P(sol) polarization free energy of solvation -27.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds