Wall clock time and date at job start Mon Mar 30 2020 06:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99720 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 C 1.50701 * 109.47098 * 239.99607 * 2 1 3 13 13 C 1.38254 * 120.00015 * 299.73253 * 12 2 1 14 14 C 1.38217 * 119.99741 * 179.76596 * 13 12 2 15 15 C 1.38258 * 120.00027 * 0.50628 * 14 13 12 16 16 C 1.38213 * 119.99641 * 359.74269 * 15 14 13 17 17 C 1.50701 * 119.99726 * 179.97438 * 16 15 14 18 18 C 1.53042 * 113.15021 * 40.57314 * 17 16 15 19 19 S 1.81496 * 89.86360 * 211.86595 * 18 17 16 20 20 C 1.53045 * 113.15183 * 300.14484 * 17 16 15 21 21 C 1.38208 * 119.99695 * 120.00007 * 12 2 1 22 22 H 1.09007 * 109.47140 * 60.00496 * 1 2 3 23 23 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47703 * 300.00645 * 1 2 3 25 25 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 26 26 H 1.08004 * 120.00246 * 359.97438 * 13 12 2 27 27 H 1.08002 * 120.00008 * 180.22291 * 14 13 12 28 28 H 1.07998 * 119.99685 * 179.72083 * 15 14 13 29 29 H 1.09000 * 112.49784 * 170.35321 * 17 16 15 30 30 H 1.09007 * 113.14770 * 327.10811 * 18 17 16 31 31 H 1.09000 * 113.15000 * 96.59260 * 18 17 16 32 32 H 1.08997 * 113.14533 * 263.40010 * 20 17 16 33 33 H 1.08994 * 113.14833 * 32.84437 * 20 17 16 34 34 H 1.07996 * 120.00483 * 0.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 1.8268 -0.4197 5.2204 10 1 1.8257 -2.5200 4.0079 11 1 3.8062 -1.1208 4.0082 12 6 2.0323 -0.7105 -1.2304 13 6 1.7029 -2.0357 -1.4463 14 6 2.1597 -2.6859 -2.5773 15 6 2.9546 -2.0141 -3.4873 16 6 3.2881 -0.6907 -3.2688 17 6 4.1551 0.0414 -4.2605 18 6 3.8113 -0.2842 -5.7158 19 16 5.5521 -0.0527 -6.1742 20 6 5.5323 -0.6002 -4.4447 21 6 2.8269 -0.0388 -2.1402 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 0.7088 1.1615 3.4843 26 1 1.0859 -2.5620 -0.7330 27 1 1.8994 -3.7202 -2.7478 28 1 3.3152 -2.5235 -4.3687 29 1 4.2042 1.1119 -4.0610 30 1 3.4641 -1.3081 -5.8553 31 1 3.1463 0.4482 -6.1732 32 1 6.3076 -0.1322 -3.8382 33 1 5.5173 -1.6849 -4.3380 34 1 3.0882 0.9950 -1.9692 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260041837.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:15 Heat of formation + Delta-G solvation = 17.789004 kcal Electronic energy + Delta-G solvation = -15462.939134 eV Core-core repulsion = 13065.346201 eV Total energy + Delta-G solvation = -2397.592933 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.60470 -37.76139 -35.78594 -33.16905 -31.43899 -29.64571 -27.20391 -27.18867 -24.87410 -23.49766 -22.51625 -20.16176 -18.31687 -17.87641 -17.03984 -16.63681 -16.55261 -15.77843 -15.14079 -14.60243 -14.54402 -14.41466 -14.00826 -13.84961 -13.51524 -13.19177 -12.95154 -12.79624 -12.63555 -12.54829 -12.20419 -12.09228 -11.93582 -11.78156 -11.28712 -11.02385 -10.85727 -10.45563 -9.53195 -9.25674 -8.83487 -8.08589 -6.22424 0.48556 0.72173 0.94043 0.94885 1.43000 1.43342 1.51278 2.43611 2.97475 3.19394 3.63646 3.70815 3.91297 4.08641 4.24857 4.30146 4.42227 4.47531 4.57122 4.70876 4.77158 4.80295 4.88133 4.99010 5.11163 5.20739 5.32499 5.39934 5.56004 5.70746 5.75882 5.78353 6.07091 6.15636 6.31927 6.40694 6.86372 7.45409 8.95573 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.036087 B = 0.004899 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.725257 B = 5713.876489 C = 5824.910070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.069 3.931 3 H 0.002 0.998 4 C -0.520 4.520 5 H 0.051 0.949 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.952 3.048 9 H -0.284 1.284 10 H -0.270 1.270 11 H -0.274 1.274 12 C -0.058 4.058 13 C -0.127 4.127 14 C -0.117 4.117 15 C -0.128 4.128 16 C -0.072 4.072 17 C -0.045 4.045 18 C -0.058 4.058 19 S -0.348 6.348 20 C -0.060 4.060 21 C -0.132 4.132 22 H 0.024 0.976 23 H 0.031 0.969 24 H 0.057 0.943 25 H 0.261 0.739 26 H 0.106 0.894 27 H 0.143 0.857 28 H 0.148 0.852 29 H 0.114 0.886 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.707 -4.852 -13.998 15.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 H 0.021 0.979 4 C -0.558 4.558 5 H 0.069 0.931 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.778 3.222 9 H -0.210 1.210 10 H -0.195 1.195 11 H -0.199 1.199 12 C -0.058 4.058 13 C -0.145 4.145 14 C -0.135 4.135 15 C -0.146 4.146 16 C -0.074 4.074 17 C -0.065 4.065 18 C -0.205 4.205 19 S -0.122 6.122 20 C -0.208 4.208 21 C -0.150 4.150 22 H 0.043 0.957 23 H 0.050 0.950 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.125 0.875 27 H 0.161 0.839 28 H 0.165 0.835 29 H 0.132 0.868 30 H 0.141 0.859 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.136 0.864 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.539 -4.339 -14.997 16.565 hybrid contribution -0.532 -0.318 2.118 2.207 sum 5.007 -4.658 -12.878 14.581 Atomic orbital electron populations 1.21617 0.97521 0.99150 0.99564 1.17755 0.93078 0.93937 0.90167 0.97948 1.21356 1.31028 1.12247 0.91149 0.93089 1.25708 0.95296 0.95695 1.01753 1.70008 1.37621 1.24050 1.24020 0.85696 0.78711 0.78897 0.78890 1.20957 1.19519 1.19910 1.20396 0.95316 0.94880 0.95232 1.21089 1.01022 0.94370 0.97999 1.21341 0.97906 1.00563 0.93708 1.21078 0.99480 0.93715 1.00284 1.19501 0.98590 0.94587 0.94769 1.21406 0.92142 1.00783 0.92122 1.24526 0.93504 1.07112 0.95392 1.89116 1.12646 1.88574 1.21839 1.24477 0.99891 1.04913 0.91501 1.21036 0.99249 0.99933 0.94827 0.95735 0.94981 0.92392 0.92966 0.87541 0.83949 0.83462 0.86767 0.85898 0.87553 0.88129 0.86399 0.87068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.84 8.78 71.98 0.63 -5.21 16 2 C 0.07 3.46 2.48 -12.29 -0.03 3.43 16 3 H 0.00 0.13 7.88 -2.39 -0.02 0.11 16 4 C -0.52 -28.25 8.24 25.60 0.21 -28.04 16 5 H 0.05 2.75 7.59 -2.91 -0.02 2.73 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -52.49 11.32 21.45 0.24 -52.25 16 8 Si 0.95 43.17 29.54 68.60 2.03 45.20 16 9 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 C -0.06 -2.41 4.74 -19.87 -0.09 -2.51 16 13 C -0.13 -4.69 8.70 22.27 0.19 -4.49 16 14 C -0.12 -3.30 10.05 22.27 0.22 -3.08 16 15 C -0.13 -3.10 8.59 22.27 0.19 -2.91 16 16 C -0.07 -1.94 5.23 -19.87 -0.10 -2.04 16 17 C -0.04 -0.94 3.65 -11.51 -0.04 -0.99 16 18 C -0.06 -1.04 7.33 72.00 0.53 -0.51 16 19 S -0.35 -7.62 24.80 -56.49 -1.40 -9.02 16 20 C -0.06 -1.17 7.42 72.00 0.53 -0.64 16 21 C -0.13 -4.67 9.33 22.27 0.21 -4.46 16 22 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 23 H 0.03 1.47 7.41 -2.39 -0.02 1.45 16 24 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 25 H 0.26 14.26 8.31 -92.70 -0.77 13.49 16 26 H 0.11 4.15 7.59 -2.91 -0.02 4.13 16 27 H 0.14 3.12 8.06 -2.91 -0.02 3.09 16 28 H 0.15 2.52 6.63 -2.91 -0.02 2.50 16 29 H 0.11 2.45 8.07 -2.39 -0.02 2.43 16 30 H 0.12 1.85 6.40 -2.38 -0.02 1.84 16 31 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.12 2.06 7.59 -2.39 -0.02 2.04 16 34 H 0.11 3.90 7.93 -2.91 -0.02 3.88 16 Total: -1.00 -60.22 290.77 4.85 -55.38 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.08 Total: 10.92 kcal Atomic # 6 Polarization: -53.12 SS G_CDS: 2.90 Total: -50.22 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.24 Total: -52.25 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: -7.62 SS G_CDS: -1.40 Total: -9.02 kcal Total: -60.22 4.85 -55.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260041837.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.167 kcal (2) G-P(sol) polarization free energy of solvation -60.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds