Wall clock time and date at job start Mon Mar 30 2020 06:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47016 * 2 1 4 4 C 1.50708 * 109.46671 * 179.97438 * 3 2 1 5 5 N 1.30095 * 124.98255 * 270.29120 * 4 3 2 6 6 C 1.35896 * 109.73789 * 180.10391 * 5 4 3 7 7 C 1.39726 * 133.48163 * 179.97438 * 6 5 4 8 8 C 1.37708 * 119.82962 * 179.68520 * 7 6 5 9 9 C 1.38717 * 120.53705 * 359.97438 * 8 7 6 10 10 C 1.38182 * 120.40286 * 359.97438 * 9 8 7 11 11 F 1.35097 * 120.10360 * 179.97438 * 10 9 8 12 12 C 1.38914 * 119.78629 * 0.04324 * 10 9 8 13 13 N 1.36505 * 124.98448 * 89.99998 * 4 3 2 14 14 C 1.37288 * 126.40596 * 0.02562 * 13 4 3 15 15 H 1.08004 * 119.99415 * 42.17228 * 14 13 4 16 16 C 1.38901 * 120.00469 * 222.17315 * 14 13 4 17 17 N 1.31387 * 119.99873 * 18.96267 * 16 14 13 18 18 Si 1.86802 * 120.00282 * 198.96578 * 16 14 13 19 19 H 1.48506 * 109.47040 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47020 * 119.99626 * 18 16 14 21 21 H 1.48499 * 109.47108 * 240.00193 * 18 16 14 22 22 H 1.09006 * 109.46703 * 60.00027 * 1 2 3 23 23 H 1.08996 * 109.47007 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47142 * 300.00509 * 1 2 3 25 25 H 1.09000 * 109.47142 * 239.99491 * 2 1 3 26 26 H 1.09006 * 109.46703 * 119.99973 * 2 1 3 27 27 H 1.08994 * 109.47183 * 59.99905 * 3 2 1 28 28 H 1.09002 * 109.46922 * 299.99345 * 3 2 1 29 29 H 1.08007 * 120.08903 * 359.70728 * 7 6 5 30 30 H 1.08002 * 119.73711 * 180.02562 * 8 7 6 31 31 H 1.07991 * 119.79621 * 180.02562 * 9 8 7 32 32 H 0.97003 * 119.99955 * 182.54995 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 7 4.2925 1.4371 1.0668 6 6 5.6038 1.4411 0.7101 7 6 6.7977 1.4389 1.4359 8 6 8.0036 1.4379 0.7710 9 6 8.0439 1.4385 -0.6156 10 6 6.8730 1.4396 -1.3492 11 9 6.9193 1.4407 -2.6994 12 6 5.6481 1.4410 -0.6939 13 7 4.3302 1.4422 -1.1174 14 6 3.8927 1.4425 -2.4187 15 1 3.0638 2.0709 -2.7095 16 6 4.5159 0.6348 -3.3613 17 7 5.2501 -0.3828 -2.9719 18 14 4.3103 0.9953 -5.1826 19 1 3.4419 2.1874 -5.3564 20 1 5.6402 1.2599 -5.7880 21 1 3.6858 -0.1744 -5.8513 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8901 27 1 1.6767 1.9563 0.8899 28 1 1.6768 1.9563 -0.8901 29 1 6.7750 1.4377 2.5158 30 1 8.9256 1.4358 1.3335 31 1 8.9963 1.4373 -1.1248 32 1 5.7154 -0.9246 -3.6283 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260054737.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:20 Heat of formation + Delta-G solvation = 8.676233 kcal Electronic energy + Delta-G solvation = -18230.622154 eV Core-core repulsion = 15298.713637 eV Total energy + Delta-G solvation = -2931.908517 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.60987 -40.81314 -36.36696 -34.28308 -33.80177 -31.28971 -29.13374 -28.69687 -26.31332 -25.20122 -21.79533 -21.51972 -20.65583 -19.40696 -17.85161 -16.69336 -15.69435 -15.05439 -15.01653 -14.59594 -14.48145 -13.99267 -13.80964 -13.68751 -13.15300 -12.54470 -12.14894 -11.97490 -11.76231 -11.50342 -11.22456 -11.03018 -10.94182 -10.81957 -10.71116 -10.52446 -10.22338 -10.14156 -9.53091 -8.89638 -8.71760 -7.28012 -7.05217 -6.68955 -4.57914 1.91432 2.53716 2.99801 3.06719 3.10604 3.75561 3.91688 4.45170 4.69882 4.84719 5.13412 5.42539 5.52480 5.54964 5.66089 5.81657 5.93704 6.02058 6.15630 6.24390 6.25986 6.33952 6.48570 6.57649 6.74322 6.79610 6.85970 6.99022 7.08955 7.26501 7.43672 7.69327 7.94096 8.10003 8.63037 9.11950 9.30125 10.24063 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.015262 B = 0.013465 C = 0.007623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.186541 B = 2079.018740 C = 3672.324139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.020 4.020 4 C 0.224 3.776 5 N -0.527 5.527 6 C 0.052 3.948 7 C -0.097 4.097 8 C -0.121 4.121 9 C -0.196 4.196 10 C 0.164 3.836 11 F -0.135 7.135 12 C 0.007 3.993 13 N -0.272 5.272 14 C -0.373 4.373 15 H 0.108 0.892 16 C 0.073 3.927 17 N -0.815 5.815 18 Si 0.925 3.075 19 H -0.262 1.262 20 H -0.270 1.270 21 H -0.276 1.276 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.685 1.570 1.686 2.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.059 4.059 4 C -0.038 4.038 5 N -0.250 5.250 6 C -0.074 4.074 7 C -0.117 4.117 8 C -0.142 4.142 9 C -0.217 4.217 10 C 0.143 3.857 11 F -0.113 7.113 12 C -0.109 4.109 13 N 0.059 4.941 14 C -0.501 4.501 15 H 0.126 0.874 16 C -0.142 4.142 17 N -0.443 5.443 18 Si 0.749 3.251 19 H -0.186 1.186 20 H -0.195 1.195 21 H -0.201 1.201 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.133 0.867 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.008 1.357 2.191 3.267 hybrid contribution 0.446 -0.085 -2.058 2.107 sum -1.562 1.272 0.133 2.019 Atomic orbital electron populations 1.21750 0.96096 1.01174 1.01387 1.21409 0.94776 0.96260 1.02914 1.19830 0.85694 0.97852 1.02535 1.23352 0.94891 1.03699 0.81875 1.70205 1.00254 1.26627 1.27902 1.18760 0.92204 1.06765 0.89637 1.19930 0.89434 1.03924 0.98455 1.20289 0.96703 1.04274 0.92934 1.20486 0.95489 1.11283 0.94483 1.16565 0.91322 1.01468 0.76341 1.91419 1.97129 1.93388 1.29379 1.18827 0.86351 1.11221 0.94492 1.41076 1.02076 1.44928 1.06043 1.19594 1.21366 1.27300 0.81818 0.87410 1.25498 0.94773 0.92407 1.01534 1.69927 1.25590 1.11885 1.36934 0.85918 0.79078 0.79030 0.81064 1.18623 1.19537 1.20106 0.92830 0.93069 0.93022 0.91189 0.91980 0.90357 0.90514 0.86690 0.86361 0.86210 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.62 16 2 C -0.11 -2.02 5.92 -26.73 -0.16 -2.18 16 3 C -0.02 -0.38 5.49 -27.88 -0.15 -0.53 16 4 C 0.22 5.38 7.08 -154.40 -1.09 4.29 16 5 N -0.53 -13.13 11.27 -8.11 -0.09 -13.23 16 6 C 0.05 1.29 7.22 -84.67 -0.61 0.68 16 7 C -0.10 -2.05 10.10 -39.22 -0.40 -2.45 16 8 C -0.12 -2.31 10.01 -39.60 -0.40 -2.70 16 9 C -0.20 -4.10 10.01 -39.42 -0.39 -4.49 16 10 C 0.16 4.10 6.73 -39.35 -0.27 3.84 16 11 F -0.13 -3.47 13.76 2.25 0.03 -3.44 16 12 C 0.01 0.20 6.13 -83.80 -0.51 -0.32 16 13 N -0.27 -7.16 2.79 -56.61 -0.16 -7.32 16 14 C -0.37 -9.63 9.26 -14.86 -0.14 -9.77 16 15 H 0.11 2.61 7.60 -52.48 -0.40 2.21 16 16 C 0.07 1.85 3.58 -17.50 -0.06 1.78 16 17 N -0.82 -21.91 11.03 55.49 0.61 -21.30 16 18 Si 0.93 19.53 29.59 -169.99 -5.03 14.50 16 19 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 20 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 21 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.08 1.39 7.56 -51.93 -0.39 1.00 16 29 H 0.12 2.11 8.06 -52.48 -0.42 1.69 16 30 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 32 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 277.71 15.07 4.19 4.19 Total: -1.00 -29.64 277.71 -8.00 -37.64 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -3.73 Total: 2.43 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -3.81 Total: -13.46 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.36 Total: -41.85 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.03 Total: -3.44 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.64 -8.00 -37.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260054737.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.316 kcal (2) G-P(sol) polarization free energy of solvation -29.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds