Wall clock time and date at job start Mon Mar 30 2020 06:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47016 * 2 1 4 4 C 1.50708 * 109.46671 * 179.97438 * 3 2 1 5 5 N 1.30095 * 124.98255 * 270.29120 * 4 3 2 6 6 C 1.35896 * 109.73789 * 180.10391 * 5 4 3 7 7 C 1.39726 * 133.48163 * 179.97438 * 6 5 4 8 8 C 1.37708 * 119.82962 * 179.68520 * 7 6 5 9 9 C 1.38717 * 120.53705 * 359.97438 * 8 7 6 10 10 C 1.38182 * 120.40286 * 359.97438 * 9 8 7 11 11 F 1.35097 * 120.10360 * 179.97438 * 10 9 8 12 12 C 1.38914 * 119.78629 * 0.04324 * 10 9 8 13 13 N 1.36505 * 124.98448 * 89.99998 * 4 3 2 14 14 C 1.37288 * 126.40596 * 0.02562 * 13 4 3 15 15 H 1.08004 * 119.99415 * 42.17228 * 14 13 4 16 16 C 1.38901 * 120.00469 * 222.17315 * 14 13 4 17 17 N 1.31387 * 119.99873 * 18.96267 * 16 14 13 18 18 Si 1.86802 * 120.00282 * 198.96578 * 16 14 13 19 19 H 1.48506 * 109.47040 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47020 * 119.99626 * 18 16 14 21 21 H 1.48499 * 109.47108 * 240.00193 * 18 16 14 22 22 H 1.09006 * 109.46703 * 60.00027 * 1 2 3 23 23 H 1.08996 * 109.47007 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47142 * 300.00509 * 1 2 3 25 25 H 1.09000 * 109.47142 * 239.99491 * 2 1 3 26 26 H 1.09006 * 109.46703 * 119.99973 * 2 1 3 27 27 H 1.08994 * 109.47183 * 59.99905 * 3 2 1 28 28 H 1.09002 * 109.46922 * 299.99345 * 3 2 1 29 29 H 1.08007 * 120.08903 * 359.70728 * 7 6 5 30 30 H 1.08002 * 119.73711 * 180.02562 * 8 7 6 31 31 H 1.07991 * 119.79621 * 180.02562 * 9 8 7 32 32 H 0.97003 * 119.99955 * 182.54995 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 7 4.2925 1.4371 1.0668 6 6 5.6038 1.4411 0.7101 7 6 6.7977 1.4389 1.4359 8 6 8.0036 1.4379 0.7710 9 6 8.0439 1.4385 -0.6156 10 6 6.8730 1.4396 -1.3492 11 9 6.9193 1.4407 -2.6994 12 6 5.6481 1.4410 -0.6939 13 7 4.3302 1.4422 -1.1174 14 6 3.8927 1.4425 -2.4187 15 1 3.0638 2.0709 -2.7095 16 6 4.5159 0.6348 -3.3613 17 7 5.2501 -0.3828 -2.9719 18 14 4.3103 0.9953 -5.1826 19 1 3.4419 2.1874 -5.3564 20 1 5.6402 1.2599 -5.7880 21 1 3.6858 -0.1744 -5.8513 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8901 27 1 1.6767 1.9563 0.8899 28 1 1.6768 1.9563 -0.8901 29 1 6.7750 1.4377 2.5158 30 1 8.9256 1.4358 1.3335 31 1 8.9963 1.4373 -1.1248 32 1 5.7154 -0.9246 -3.6283 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260054737.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:19 Heat of formation + Delta-G solvation = -7.147893 kcal Electronic energy + Delta-G solvation = -18231.308340 eV Core-core repulsion = 15298.713637 eV Total energy + Delta-G solvation = -2932.594703 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.47441 -42.61602 -38.05470 -35.92485 -35.45514 -33.16841 -30.74003 -30.40977 -27.84157 -27.08776 -23.37492 -23.23093 -22.28950 -21.18733 -19.67615 -18.44234 -17.57564 -16.83663 -16.76337 -16.41178 -16.04921 -15.55543 -15.50634 -15.40474 -14.75263 -14.06118 -13.80423 -13.70438 -13.41213 -12.97770 -12.94229 -12.60722 -12.47609 -12.39690 -12.18748 -12.17267 -11.83903 -11.56985 -11.35245 -10.77265 -10.61078 -9.09999 -8.84765 -8.53660 -6.53396 0.15618 0.82195 1.30205 1.35158 1.46517 1.97653 2.14108 2.69096 2.84242 3.06813 3.48938 3.69948 4.11438 4.14988 4.22306 4.22426 4.40560 4.62836 4.66410 4.75028 4.81193 4.93885 5.02716 5.10661 5.12570 5.23679 5.32815 5.37759 5.47525 5.56435 5.67641 5.92722 6.17031 6.25589 6.73835 7.27285 7.43595 8.36738 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.015262 B = 0.013465 C = 0.007623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.186541 B = 2079.018740 C = 3672.324139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C -0.019 4.019 4 C 0.213 3.787 5 N -0.544 5.544 6 C 0.023 3.977 7 C -0.102 4.102 8 C -0.103 4.103 9 C -0.179 4.179 10 C 0.118 3.882 11 F -0.149 7.149 12 C -0.027 4.027 13 N -0.296 5.296 14 C -0.394 4.394 15 H 0.114 0.886 16 C 0.036 3.964 17 N -0.854 5.854 18 Si 0.987 3.013 19 H -0.249 1.249 20 H -0.276 1.276 21 H -0.266 1.266 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.035 0.965 26 H 0.050 0.950 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.144 0.856 30 H 0.173 0.827 31 H 0.152 0.848 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.398 2.007 2.302 3.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.145 4.145 3 C -0.057 4.057 4 C -0.049 4.049 5 N -0.267 5.267 6 C -0.102 4.102 7 C -0.121 4.121 8 C -0.124 4.124 9 C -0.200 4.200 10 C 0.096 3.904 11 F -0.128 7.128 12 C -0.142 4.142 13 N 0.033 4.967 14 C -0.521 4.521 15 H 0.131 0.869 16 C -0.175 4.175 17 N -0.483 5.483 18 Si 0.807 3.193 19 H -0.172 1.172 20 H -0.201 1.201 21 H -0.190 1.190 22 H 0.080 0.920 23 H 0.082 0.918 24 H 0.090 0.910 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.119 0.881 28 H 0.101 0.899 29 H 0.162 0.838 30 H 0.190 0.810 31 H 0.169 0.831 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.722 1.801 2.825 3.767 hybrid contribution 0.464 -0.207 -2.093 2.154 sum -1.259 1.595 0.732 2.159 Atomic orbital electron populations 1.21685 0.92463 1.02493 1.02778 1.21312 0.97789 0.94750 1.00650 1.20042 0.82854 0.99026 1.03819 1.24293 0.96796 1.02403 0.81429 1.70201 1.00644 1.27576 1.28303 1.19429 0.93377 1.07574 0.89779 1.20424 0.88776 1.02960 0.99990 1.20881 0.98069 1.01168 0.92280 1.21027 0.95418 1.08136 0.95468 1.17118 0.92418 1.04566 0.76267 1.91360 1.97211 1.93885 1.30352 1.19375 0.87037 1.12217 0.95609 1.41317 1.02555 1.46243 1.06539 1.19911 1.22084 1.27735 0.82370 0.86885 1.26358 0.94081 0.91724 1.05370 1.70022 1.27073 1.13098 1.38101 0.85009 0.78832 0.79562 0.75873 1.17225 1.20125 1.19035 0.92006 0.91835 0.91025 0.94576 0.93088 0.88137 0.89913 0.83835 0.80952 0.83061 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 9.91 71.98 0.71 -2.75 16 2 C -0.11 -3.75 5.92 30.60 0.18 -3.57 16 3 C -0.02 -0.70 5.49 29.85 0.16 -0.54 16 4 C 0.21 10.49 7.08 137.78 0.98 11.47 16 5 N -0.54 -27.47 11.27 -179.59 -2.02 -29.49 16 6 C 0.02 1.14 7.22 39.42 0.28 1.43 16 7 C -0.10 -4.07 10.10 22.50 0.23 -3.85 16 8 C -0.10 -3.58 10.01 22.26 0.22 -3.36 16 9 C -0.18 -7.15 10.01 22.37 0.22 -6.92 16 10 C 0.12 5.93 6.73 22.42 0.15 6.08 16 11 F -0.15 -7.89 13.76 44.97 0.62 -7.27 16 12 C -0.03 -1.46 6.13 38.81 0.24 -1.22 16 13 N -0.30 -16.08 2.79 -333.02 -0.93 -17.01 16 14 C -0.39 -20.95 9.26 84.00 0.78 -20.18 16 15 H 0.11 5.62 7.60 -2.91 -0.02 5.60 16 16 C 0.04 1.84 3.58 84.92 0.30 2.15 16 17 N -0.85 -47.41 11.03 21.65 0.24 -47.18 16 18 Si 0.99 40.55 29.59 68.60 2.03 42.58 16 19 H -0.25 -9.57 7.11 99.48 0.71 -8.87 16 20 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 22 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 23 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 27 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 28 H 0.08 3.00 7.56 -2.39 -0.02 2.98 16 29 H 0.14 4.83 8.06 -2.91 -0.02 4.81 16 30 H 0.17 4.12 8.06 -2.91 -0.02 4.10 16 31 H 0.15 4.96 8.06 -2.92 -0.02 4.94 16 32 H 0.28 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -67.10 277.71 5.52 -61.57 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 1.12 Total: 18.04 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: 4.46 Total: -21.25 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -2.71 Total: -93.68 kcal Atomic # 9 Polarization: -7.89 SS G_CDS: 0.62 Total: -7.27 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Total: -67.10 5.52 -61.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260054737.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.426 kcal (2) G-P(sol) polarization free energy of solvation -67.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds