Wall clock time and date at job start Mon Mar 30 2020 06:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.96866 * 2 1 4 4 C 1.54136 * 111.09723 * 124.12194 * 2 1 3 5 5 C 1.50876 * 110.54531 * 89.78830 * 4 2 1 6 6 C 1.38924 * 115.37027 * 20.27774 * 5 4 2 7 7 C 1.38778 * 121.14916 * 179.67804 * 6 5 4 8 8 C 1.38077 * 120.16067 * 0.19066 * 7 6 5 9 9 C 1.38274 * 119.28590 * 0.02562 * 8 7 6 10 10 C 1.37735 * 120.55047 * 359.66557 * 9 8 7 11 11 C 1.50701 * 119.47756 * 180.27743 * 10 9 8 12 12 C 1.53004 * 109.46736 * 265.19089 * 11 10 9 13 13 C 1.50701 * 109.46736 * 179.97438 * 12 11 10 14 14 H 1.07992 * 120.00086 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00001 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99637 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00310 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47368 * 59.99553 * 17 15 13 19 19 H 1.48499 * 109.47344 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47034 * 299.99852 * 17 15 13 21 21 S 1.77438 * 108.27832 * 359.62085 * 6 5 4 22 22 H 1.09000 * 109.46749 * 295.88050 * 1 2 3 23 23 H 1.08995 * 109.47289 * 55.87643 * 1 2 3 24 24 H 1.08995 * 109.47350 * 175.88455 * 1 2 3 25 25 H 1.09003 * 109.26908 * 329.50147 * 4 2 1 26 26 H 1.09003 * 109.27212 * 210.08069 * 4 2 1 27 27 H 1.08002 * 119.91951 * 180.21037 * 7 6 5 28 28 H 1.08000 * 120.35178 * 179.97438 * 8 7 6 29 29 H 1.08010 * 119.72329 * 179.90163 * 9 8 7 30 30 H 1.09000 * 109.46549 * 25.18129 * 11 10 9 31 31 H 1.08999 * 109.47307 * 145.18572 * 11 10 9 32 32 H 1.09000 * 109.46818 * 299.98876 * 12 11 10 33 33 H 1.08999 * 109.47645 * 59.99690 * 12 11 10 34 34 H 0.97007 * 120.00049 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9201 1.0178 0.0000 4 6 2.0848 -0.8067 1.1905 5 6 2.2705 -2.2544 0.8085 6 6 2.3514 -2.5044 -0.5557 7 6 2.5288 -3.7928 -1.0401 8 6 2.6246 -4.8561 -0.1645 9 6 2.5414 -4.6218 1.1957 10 6 2.3716 -3.3424 1.6767 11 6 2.2902 -3.1140 3.1641 12 6 0.8227 -3.0877 3.5963 13 6 0.7413 -2.8600 5.0838 14 1 1.6457 -2.7459 5.6629 15 6 -0.4878 -2.7984 5.7056 16 7 -1.5891 -2.9379 5.0004 17 14 -0.5888 -2.5168 7.5494 18 1 0.0499 -1.2196 7.8878 19 1 -2.0130 -2.4912 7.9690 20 1 0.1166 -3.6153 8.2572 21 16 2.1897 -0.9605 -1.4150 22 1 -0.3633 0.4486 0.9246 23 1 -0.3633 0.5765 -0.8507 24 1 -0.3634 -1.0249 -0.0737 25 1 1.3871 -0.7416 2.0254 26 1 3.0450 -0.3882 1.4923 27 1 2.5924 -3.9640 -2.1046 28 1 2.7623 -5.8600 -0.5381 29 1 2.6138 -5.4486 1.8869 30 1 2.8077 -3.9200 3.6842 31 1 2.7591 -2.1617 3.4117 32 1 0.3052 -2.2817 3.0762 33 1 0.3538 -4.0401 3.3487 34 1 -2.4539 -2.8942 5.4377 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260067648.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:54 Heat of formation + Delta-G solvation = -1.260106 kcal Electronic energy + Delta-G solvation = -15599.954320 eV Core-core repulsion = 13201.535356 eV Total energy + Delta-G solvation = -2398.418964 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.34716 -35.21419 -34.13648 -32.12415 -30.71533 -28.92881 -26.62459 -24.96418 -22.89138 -21.94795 -20.66702 -20.14592 -17.01428 -16.25324 -15.43401 -15.15618 -14.91595 -14.69788 -14.49231 -13.18813 -13.06611 -12.71666 -12.64106 -12.58230 -12.34821 -12.11443 -11.39901 -11.36430 -11.15756 -11.04330 -10.89820 -10.79429 -10.47861 -10.00679 -9.83855 -9.62613 -9.27016 -9.13165 -8.38970 -8.10877 -7.22497 -6.03907 -4.07436 1.46693 1.66467 1.81528 2.42516 3.30048 3.35019 3.37082 3.96842 4.42268 4.64453 4.84786 4.98355 5.17757 5.26389 5.31509 5.42792 5.65555 5.72997 5.78074 5.87245 5.90836 5.94853 6.11360 6.27181 6.31026 6.40727 6.54516 6.59707 6.70665 6.93222 7.02251 7.26375 7.62814 7.75282 7.95337 8.35495 8.99192 9.56872 11.06806 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.025930 B = 0.006299 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.558773 B = 4443.970486 C = 5123.893372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.046 4.046 3 H 0.116 0.884 4 C -0.089 4.089 5 C -0.097 4.097 6 C -0.077 4.077 7 C -0.107 4.107 8 C -0.105 4.105 9 C -0.121 4.121 10 C -0.034 4.034 11 C -0.083 4.083 12 C 0.033 3.967 13 C -0.524 4.524 14 H 0.055 0.945 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 S -0.175 6.175 22 H 0.073 0.927 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.119 0.881 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.017 0.983 33 H 0.017 0.983 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.973 2.482 -10.717 13.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.175 4.175 3 H 0.134 0.866 4 C -0.126 4.126 5 C -0.102 4.102 6 C -0.189 4.189 7 C -0.130 4.130 8 C -0.125 4.125 9 C -0.141 4.141 10 C -0.036 4.036 11 C -0.120 4.120 12 C -0.004 4.004 13 C -0.562 4.562 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.719 3.281 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 S 0.067 5.933 22 H 0.092 0.908 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.122 0.878 26 H 0.106 0.894 27 H 0.137 0.863 28 H 0.143 0.857 29 H 0.143 0.857 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.013 2.959 -11.941 14.160 hybrid contribution -0.421 -0.356 2.192 2.260 sum 6.592 2.602 -9.749 12.052 Atomic orbital electron populations 1.21974 0.91889 1.03460 1.02554 1.24024 0.99540 1.00705 0.93207 0.86613 1.21020 1.02945 0.90141 0.98531 1.20605 1.02594 0.94947 0.92076 1.21891 1.05726 0.95991 0.95287 1.20241 1.03403 0.90015 0.99375 1.20998 1.00166 0.98099 0.93250 1.20921 1.01304 0.96456 0.95380 1.20105 0.94878 0.91490 0.97080 1.20895 1.01910 1.01129 0.88093 1.19038 0.88134 0.97499 0.95745 1.21202 0.92245 1.49681 0.93105 0.92665 1.25009 0.95838 0.95290 0.98127 1.69961 0.97532 1.50024 1.35688 0.86670 0.76955 0.78808 0.85650 1.20231 1.21266 1.20211 1.85754 1.81602 1.04567 1.21363 0.90832 0.91896 0.91541 0.87772 0.89425 0.86313 0.85669 0.85712 0.92082 0.92181 0.96442 0.96467 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.30 37.16 0.35 -1.54 16 2 C -0.05 -0.63 4.04 -26.14 -0.11 -0.73 16 3 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 4 C -0.09 -1.38 4.98 -27.20 -0.14 -1.52 16 5 C -0.10 -1.70 5.94 -103.79 -0.62 -2.32 16 6 C -0.08 -1.27 6.48 -39.13 -0.25 -1.53 16 7 C -0.11 -1.62 10.05 -39.44 -0.40 -2.01 16 8 C -0.11 -1.53 10.08 -39.63 -0.40 -1.93 16 9 C -0.12 -2.00 9.60 -39.75 -0.38 -2.39 16 10 C -0.03 -0.62 5.15 -104.31 -0.54 -1.16 16 11 C -0.08 -1.68 4.83 -27.88 -0.13 -1.82 16 12 C 0.03 0.83 4.95 -27.88 -0.14 0.69 16 13 C -0.52 -14.45 9.11 -34.44 -0.31 -14.77 16 14 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 17 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 S -0.17 -2.59 22.56 -107.50 -2.43 -5.01 16 22 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.10 1.80 6.77 -51.93 -0.35 1.44 16 26 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 29 H 0.12 1.91 8.05 -52.48 -0.42 1.48 16 30 H 0.06 1.20 8.03 -51.93 -0.42 0.78 16 31 H 0.06 1.18 7.61 -51.93 -0.40 0.79 16 32 H 0.02 0.46 7.22 -51.93 -0.38 0.09 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 295.37 15.07 4.45 4.45 Total: -1.00 -29.76 295.37 -10.31 -40.06 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -4.88 Total: -0.62 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: -3.16 Total: -29.46 kcal Atomic # 7 Polarization: -26.41 SS G_CDS: 0.74 Total: -25.67 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -2.59 SS G_CDS: -2.43 Total: -5.01 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.76 -10.31 -40.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260067648.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.804 kcal (2) G-P(sol) polarization free energy of solvation -29.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds