Wall clock time and date at job start Mon Mar 30 2020 06:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.96866 * 2 1 4 4 C 1.54136 * 111.09723 * 124.12194 * 2 1 3 5 5 C 1.50876 * 110.54531 * 89.78830 * 4 2 1 6 6 C 1.38924 * 115.37027 * 20.27774 * 5 4 2 7 7 C 1.38778 * 121.14916 * 179.67804 * 6 5 4 8 8 C 1.38077 * 120.16067 * 0.19066 * 7 6 5 9 9 C 1.38274 * 119.28590 * 0.02562 * 8 7 6 10 10 C 1.37735 * 120.55047 * 359.66557 * 9 8 7 11 11 C 1.50701 * 119.47756 * 180.27743 * 10 9 8 12 12 C 1.53004 * 109.46736 * 265.19089 * 11 10 9 13 13 C 1.50701 * 109.46736 * 179.97438 * 12 11 10 14 14 H 1.07992 * 120.00086 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00001 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99637 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00310 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47368 * 59.99553 * 17 15 13 19 19 H 1.48499 * 109.47344 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47034 * 299.99852 * 17 15 13 21 21 S 1.77438 * 108.27832 * 359.62085 * 6 5 4 22 22 H 1.09000 * 109.46749 * 295.88050 * 1 2 3 23 23 H 1.08995 * 109.47289 * 55.87643 * 1 2 3 24 24 H 1.08995 * 109.47350 * 175.88455 * 1 2 3 25 25 H 1.09003 * 109.26908 * 329.50147 * 4 2 1 26 26 H 1.09003 * 109.27212 * 210.08069 * 4 2 1 27 27 H 1.08002 * 119.91951 * 180.21037 * 7 6 5 28 28 H 1.08000 * 120.35178 * 179.97438 * 8 7 6 29 29 H 1.08010 * 119.72329 * 179.90163 * 9 8 7 30 30 H 1.09000 * 109.46549 * 25.18129 * 11 10 9 31 31 H 1.08999 * 109.47307 * 145.18572 * 11 10 9 32 32 H 1.09000 * 109.46818 * 299.98876 * 12 11 10 33 33 H 1.08999 * 109.47645 * 59.99690 * 12 11 10 34 34 H 0.97007 * 120.00049 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9201 1.0178 0.0000 4 6 2.0848 -0.8067 1.1905 5 6 2.2705 -2.2544 0.8085 6 6 2.3514 -2.5044 -0.5557 7 6 2.5288 -3.7928 -1.0401 8 6 2.6246 -4.8561 -0.1645 9 6 2.5414 -4.6218 1.1957 10 6 2.3716 -3.3424 1.6767 11 6 2.2902 -3.1140 3.1641 12 6 0.8227 -3.0877 3.5963 13 6 0.7413 -2.8600 5.0838 14 1 1.6457 -2.7459 5.6629 15 6 -0.4878 -2.7984 5.7056 16 7 -1.5891 -2.9379 5.0004 17 14 -0.5888 -2.5168 7.5494 18 1 0.0499 -1.2196 7.8878 19 1 -2.0130 -2.4912 7.9690 20 1 0.1166 -3.6153 8.2572 21 16 2.1897 -0.9605 -1.4150 22 1 -0.3633 0.4486 0.9246 23 1 -0.3633 0.5765 -0.8507 24 1 -0.3634 -1.0249 -0.0737 25 1 1.3871 -0.7416 2.0254 26 1 3.0450 -0.3882 1.4923 27 1 2.5924 -3.9640 -2.1046 28 1 2.7623 -5.8600 -0.5381 29 1 2.6138 -5.4486 1.8869 30 1 2.8077 -3.9200 3.6842 31 1 2.7591 -2.1617 3.4117 32 1 0.3052 -2.2817 3.0762 33 1 0.3538 -4.0401 3.3487 34 1 -2.4539 -2.8942 5.4377 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260067648.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:53 Heat of formation + Delta-G solvation = -15.261967 kcal Electronic energy + Delta-G solvation = -15600.561486 eV Core-core repulsion = 13201.535356 eV Total energy + Delta-G solvation = -2399.026130 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.62625 -36.38267 -35.98734 -33.97645 -31.90457 -30.61635 -27.90742 -26.75302 -24.16831 -23.58299 -21.99309 -21.57175 -18.65951 -17.98306 -16.75762 -16.55337 -16.34942 -16.05941 -15.89539 -14.72191 -14.46377 -14.33340 -14.13219 -13.93259 -13.67798 -13.54367 -13.15278 -12.83629 -12.60478 -12.53999 -12.32443 -12.21168 -11.97779 -11.74469 -11.61092 -11.19625 -10.97455 -10.55638 -10.52843 -9.46844 -8.40427 -8.19736 -6.31871 0.22138 0.38427 0.64671 1.23611 1.40248 1.42643 1.50680 2.40359 2.70340 3.13057 3.46270 3.70986 3.83967 3.93437 4.08240 4.27132 4.40019 4.47383 4.54395 4.63205 4.69999 4.81081 4.81493 4.85790 4.90898 5.07764 5.19196 5.20803 5.30670 5.44881 5.48859 5.54834 5.82430 5.83156 5.99310 6.22208 6.84361 7.37562 8.91194 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.025930 B = 0.006299 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.558773 B = 4443.970486 C = 5123.893372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.042 4.042 3 H 0.147 0.853 4 C -0.089 4.089 5 C -0.114 4.114 6 C -0.096 4.096 7 C -0.107 4.107 8 C -0.098 4.098 9 C -0.132 4.132 10 C -0.063 4.063 11 C -0.067 4.067 12 C 0.044 3.956 13 C -0.544 4.544 14 H 0.062 0.938 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.962 3.038 18 H -0.266 1.266 19 H -0.284 1.284 20 H -0.267 1.267 21 S -0.162 6.162 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.038 0.962 25 H 0.079 0.921 26 H 0.101 0.899 27 H 0.145 0.855 28 H 0.162 0.838 29 H 0.132 0.868 30 H 0.064 0.936 31 H 0.062 0.938 32 H -0.007 1.007 33 H -0.015 1.015 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.959 2.768 -11.215 14.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.170 4.170 3 H 0.165 0.835 4 C -0.127 4.127 5 C -0.120 4.120 6 C -0.208 4.208 7 C -0.130 4.130 8 C -0.117 4.117 9 C -0.152 4.152 10 C -0.065 4.065 11 C -0.104 4.104 12 C 0.007 3.993 13 C -0.582 4.582 14 H 0.080 0.920 15 C -0.195 4.195 16 N -0.571 5.571 17 Si 0.787 3.213 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.192 1.192 21 S 0.080 5.920 22 H 0.090 0.910 23 H 0.104 0.896 24 H 0.057 0.943 25 H 0.097 0.903 26 H 0.119 0.881 27 H 0.163 0.837 28 H 0.180 0.820 29 H 0.150 0.850 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.011 0.989 33 H 0.004 0.996 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.016 3.245 -12.443 15.153 hybrid contribution -0.734 -0.470 2.270 2.431 sum 7.283 2.776 -10.173 12.816 Atomic orbital electron populations 1.21944 0.92080 1.02043 1.03512 1.24133 0.99384 1.01729 0.91717 0.83548 1.21037 1.03067 0.89955 0.98632 1.20841 1.02843 0.95530 0.92742 1.22226 1.05856 0.97497 0.95222 1.20677 1.01891 0.89552 1.00882 1.21381 0.98417 0.99797 0.92104 1.21155 1.01229 0.95916 0.96860 1.20051 0.97590 0.92976 0.95863 1.20595 0.98339 1.01393 0.90084 1.18829 0.91066 0.94656 0.94783 1.21648 0.92694 1.49456 0.94388 0.92014 1.25941 0.95400 0.94838 1.03299 1.70103 0.98133 1.51042 1.37849 0.85541 0.77110 0.79256 0.79408 1.19062 1.20945 1.19200 1.85635 1.81493 1.03605 1.21316 0.90978 0.89608 0.94302 0.90278 0.88122 0.83737 0.81999 0.84976 0.91732 0.91932 0.98904 0.99624 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.30 71.98 0.67 -2.97 16 2 C -0.04 -1.08 4.04 30.98 0.13 -0.95 16 3 H 0.15 2.89 8.14 -2.39 -0.02 2.87 16 4 C -0.09 -2.79 4.98 30.29 0.15 -2.64 16 5 C -0.11 -4.03 5.94 -19.33 -0.11 -4.14 16 6 C -0.10 -3.08 6.48 22.56 0.15 -2.93 16 7 C -0.11 -3.01 10.05 22.36 0.22 -2.78 16 8 C -0.10 -2.64 10.08 22.24 0.22 -2.41 16 9 C -0.13 -4.31 9.60 22.16 0.21 -4.10 16 10 C -0.06 -2.37 5.15 -19.66 -0.10 -2.47 16 11 C -0.07 -2.79 4.83 29.85 0.14 -2.65 16 12 C 0.04 2.31 4.95 29.85 0.15 2.45 16 13 C -0.54 -30.63 9.11 25.60 0.23 -30.40 16 14 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 15 C 0.00 0.19 5.46 84.66 0.46 0.65 16 16 N -0.93 -56.46 13.29 21.45 0.28 -56.17 16 17 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 18 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 S -0.16 -4.54 22.56 -56.49 -1.27 -5.81 16 22 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.08 2.86 6.77 -2.39 -0.02 2.85 16 26 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 27 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 28 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 29 H 0.13 3.99 8.05 -2.91 -0.02 3.97 16 30 H 0.06 2.59 8.03 -2.39 -0.02 2.57 16 31 H 0.06 2.53 7.61 -2.39 -0.02 2.51 16 32 H -0.01 -0.42 7.22 -2.39 -0.02 -0.44 16 33 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 34 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 Total: -1.00 -64.87 295.37 4.63 -60.24 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 1.07 Total: 11.31 kcal Atomic # 6 Polarization: -57.87 SS G_CDS: 2.52 Total: -55.34 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.28 Total: -56.17 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: -4.54 SS G_CDS: -1.27 Total: -5.81 kcal Total: -64.87 4.63 -60.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260067648.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.976 kcal (2) G-P(sol) polarization free energy of solvation -64.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds