Wall clock time and date at job start Mon Mar 30 2020 06:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.96036 * 2 1 4 4 C 1.54135 * 111.13252 * 235.85678 * 2 1 3 5 5 C 1.50876 * 110.53639 * 270.19551 * 4 2 1 6 6 C 1.38924 * 115.37797 * 339.71322 * 5 4 2 7 7 C 1.38779 * 121.14926 * 180.63645 * 6 5 4 8 8 C 1.38068 * 120.15689 * 359.34975 * 7 6 5 9 9 C 1.38287 * 119.29373 * 0.42845 * 8 7 6 10 10 C 1.37740 * 120.54297 * 359.89216 * 9 8 7 11 11 C 1.50699 * 119.47559 * 179.97438 * 10 9 8 12 12 C 1.52991 * 109.47388 * 265.02707 * 11 10 9 13 13 C 1.50699 * 109.47388 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99828 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00171 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99872 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99818 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46979 * 89.99637 * 17 15 13 19 19 H 1.48500 * 109.47208 * 209.99471 * 17 15 13 20 20 H 1.48504 * 109.47306 * 329.99727 * 17 15 13 21 21 S 1.77439 * 108.27172 * 0.38665 * 6 5 4 22 22 H 1.09000 * 109.47176 * 297.32930 * 1 2 3 23 23 H 1.09007 * 109.47420 * 57.33347 * 1 2 3 24 24 H 1.09003 * 109.46832 * 177.32855 * 1 2 3 25 25 H 1.08993 * 109.27238 * 30.48250 * 4 2 1 26 26 H 1.09005 * 109.26981 * 149.90740 * 4 2 1 27 27 H 1.07994 * 119.92085 * 179.52496 * 7 6 5 28 28 H 1.07997 * 120.35530 * 180.22424 * 8 7 6 29 29 H 1.08000 * 119.72928 * 179.87173 * 9 8 7 30 30 H 1.09003 * 109.46228 * 25.02887 * 11 10 9 31 31 H 1.08997 * 109.46925 * 145.01689 * 11 10 9 32 32 H 1.08999 * 109.46946 * 299.99691 * 12 11 10 33 33 H 1.08998 * 109.47197 * 59.99404 * 12 11 10 34 34 H 0.97004 * 119.99965 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9199 1.0179 0.0000 4 6 2.0857 -0.8069 -1.1899 5 6 2.2720 -2.2543 -0.8069 6 6 2.3527 -2.5036 0.5574 7 6 2.5371 -3.7908 1.0423 8 6 2.6307 -4.8548 0.1674 9 6 2.5477 -4.6214 -1.1931 10 6 2.3713 -3.3430 -1.6745 11 6 2.2846 -3.1160 -3.1618 12 6 3.6660 -2.7411 -3.7019 13 6 3.5792 -2.5136 -5.1891 14 1 2.6334 -2.6256 -5.6982 15 6 4.7075 -2.1634 -5.9000 16 7 5.8594 -2.0275 -5.2801 17 14 4.6000 -1.8821 -7.7435 18 1 4.2917 -0.4539 -8.0091 19 1 5.8973 -2.2341 -8.3745 20 1 3.5253 -2.7346 -8.3125 21 16 2.1898 -0.9592 1.4157 22 1 -0.3633 0.4718 0.9130 23 1 -0.3634 0.5547 -0.8652 24 1 -0.3633 -1.0266 -0.0479 25 1 1.3884 -0.7427 -2.0251 26 1 3.0458 -0.3881 -1.4915 27 1 2.6047 -3.9610 2.1066 28 1 2.7705 -5.8582 0.5414 29 1 2.6221 -5.4482 -1.8839 30 1 1.9392 -4.0280 -3.6488 31 1 1.5829 -2.3073 -3.3656 32 1 4.0113 -1.8292 -3.2148 33 1 4.3677 -3.5500 -3.4980 34 1 6.6531 -1.7807 -5.7802 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260067651.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:56 Heat of formation + Delta-G solvation = -0.992985 kcal Electronic energy + Delta-G solvation = -15506.075830 eV Core-core repulsion = 13107.668449 eV Total energy + Delta-G solvation = -2398.407381 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.35308 -35.27022 -34.13210 -32.12153 -30.76906 -28.92324 -26.68298 -24.96992 -22.93658 -21.94880 -20.72152 -20.12628 -17.01567 -16.26253 -15.44211 -15.17309 -14.95958 -14.73922 -14.48505 -13.28924 -13.11447 -12.84339 -12.63890 -12.53940 -12.34032 -12.16902 -11.45795 -11.37812 -11.22791 -11.05605 -10.91803 -10.81457 -10.47264 -10.01981 -9.76179 -9.73067 -9.24833 -9.11268 -8.38371 -8.11517 -7.22959 -6.02927 -4.06504 1.46795 1.66587 1.77996 2.40809 3.29234 3.35952 3.38866 3.97170 4.43044 4.59127 4.80473 4.91423 5.16636 5.22927 5.32601 5.37892 5.60128 5.63295 5.74370 5.76882 5.84234 5.89106 6.09138 6.14649 6.27594 6.37071 6.53963 6.60414 6.70406 6.93538 7.02131 7.26526 7.63959 7.76733 7.96378 8.36431 9.00433 9.57840 11.07939 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.026154 B = 0.005949 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.344223 B = 4705.845791 C = 5279.909582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.051 4.051 3 H 0.117 0.883 4 C -0.085 4.085 5 C -0.097 4.097 6 C -0.078 4.078 7 C -0.107 4.107 8 C -0.105 4.105 9 C -0.120 4.120 10 C -0.034 4.034 11 C -0.082 4.082 12 C 0.032 3.968 13 C -0.523 4.523 14 H 0.056 0.944 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.891 3.109 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 S -0.170 6.170 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.119 0.881 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.017 0.983 33 H 0.017 0.983 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.222 0.489 11.409 14.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.179 4.179 3 H 0.135 0.865 4 C -0.122 4.122 5 C -0.102 4.102 6 C -0.190 4.190 7 C -0.130 4.130 8 C -0.125 4.125 9 C -0.140 4.140 10 C -0.036 4.036 11 C -0.120 4.120 12 C -0.005 4.005 13 C -0.561 4.561 14 H 0.074 0.926 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.719 3.281 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 S 0.071 5.929 22 H 0.083 0.917 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.111 0.889 26 H 0.116 0.884 27 H 0.137 0.863 28 H 0.143 0.857 29 H 0.143 0.857 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.794 1.008 12.617 15.412 hybrid contribution 0.000 -0.287 -2.211 2.229 sum -8.794 0.721 10.407 13.644 Atomic orbital electron populations 1.21962 0.92329 1.02990 1.02385 1.24047 0.99069 1.01153 0.93671 0.86478 1.20974 1.03454 0.90280 0.97517 1.20592 1.02747 0.94823 0.92055 1.21884 1.05817 0.95960 0.95302 1.20233 1.03347 0.90024 0.99398 1.20998 1.00120 0.98147 0.93259 1.20925 1.01182 0.96588 0.95330 1.20103 0.95092 0.91433 0.96959 1.20894 1.01829 1.01151 0.88080 1.19036 0.89349 0.96874 0.95231 1.21234 0.94780 1.47045 0.93079 0.92623 1.25016 0.95433 0.95470 0.98404 1.69971 0.99438 1.47946 1.35860 0.86609 0.77436 0.78500 0.85554 1.20649 1.21195 1.19848 1.85800 1.81736 1.04597 1.20718 0.91714 0.91250 0.91879 0.88881 0.88425 0.86308 0.85662 0.85703 0.92113 0.92185 0.96458 0.96463 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.30 37.16 0.35 -1.15 16 2 C -0.05 -0.65 4.04 -26.14 -0.11 -0.76 16 3 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 4 C -0.08 -1.32 5.32 -27.20 -0.14 -1.46 16 5 C -0.10 -1.70 5.94 -103.79 -0.62 -2.31 16 6 C -0.08 -1.28 6.48 -39.13 -0.25 -1.53 16 7 C -0.11 -1.61 10.05 -39.44 -0.40 -2.01 16 8 C -0.11 -1.53 10.08 -39.63 -0.40 -1.93 16 9 C -0.12 -2.00 9.60 -39.75 -0.38 -2.38 16 10 C -0.03 -0.63 5.15 -104.31 -0.54 -1.17 16 11 C -0.08 -1.67 4.98 -27.89 -0.14 -1.81 16 12 C 0.03 0.82 4.95 -27.89 -0.14 0.68 16 13 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 14 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 17 Si 0.89 21.39 29.54 -169.99 -5.02 16.36 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 21 S -0.17 -2.51 22.56 -107.50 -2.43 -4.94 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.09 1.40 6.88 -51.93 -0.36 1.04 16 26 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 27 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.13 1.90 8.04 -52.49 -0.42 1.48 16 30 H 0.06 1.20 8.03 -51.93 -0.42 0.78 16 31 H 0.06 1.17 6.94 -51.93 -0.36 0.81 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 296.22 15.07 4.46 4.46 Total: -1.00 -30.25 296.22 -10.33 -40.58 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -4.90 Total: -1.36 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: -3.18 Total: -29.13 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.74 Total: -25.98 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -2.51 SS G_CDS: -2.43 Total: -4.94 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.25 -10.33 -40.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260067651.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.583 kcal (2) G-P(sol) polarization free energy of solvation -30.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds