Wall clock time and date at job start Mon Mar 30 2020 06:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.96036 * 2 1 4 4 C 1.54135 * 111.13252 * 235.85678 * 2 1 3 5 5 C 1.50876 * 110.53639 * 270.19551 * 4 2 1 6 6 C 1.38924 * 115.37797 * 339.71322 * 5 4 2 7 7 C 1.38779 * 121.14926 * 180.63645 * 6 5 4 8 8 C 1.38068 * 120.15689 * 359.34975 * 7 6 5 9 9 C 1.38287 * 119.29373 * 0.42845 * 8 7 6 10 10 C 1.37740 * 120.54297 * 359.89216 * 9 8 7 11 11 C 1.50699 * 119.47559 * 179.97438 * 10 9 8 12 12 C 1.52991 * 109.47388 * 265.02707 * 11 10 9 13 13 C 1.50699 * 109.47388 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99828 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00171 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99872 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99818 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46979 * 89.99637 * 17 15 13 19 19 H 1.48500 * 109.47208 * 209.99471 * 17 15 13 20 20 H 1.48504 * 109.47306 * 329.99727 * 17 15 13 21 21 S 1.77439 * 108.27172 * 0.38665 * 6 5 4 22 22 H 1.09000 * 109.47176 * 297.32930 * 1 2 3 23 23 H 1.09007 * 109.47420 * 57.33347 * 1 2 3 24 24 H 1.09003 * 109.46832 * 177.32855 * 1 2 3 25 25 H 1.08993 * 109.27238 * 30.48250 * 4 2 1 26 26 H 1.09005 * 109.26981 * 149.90740 * 4 2 1 27 27 H 1.07994 * 119.92085 * 179.52496 * 7 6 5 28 28 H 1.07997 * 120.35530 * 180.22424 * 8 7 6 29 29 H 1.08000 * 119.72928 * 179.87173 * 9 8 7 30 30 H 1.09003 * 109.46228 * 25.02887 * 11 10 9 31 31 H 1.08997 * 109.46925 * 145.01689 * 11 10 9 32 32 H 1.08999 * 109.46946 * 299.99691 * 12 11 10 33 33 H 1.08998 * 109.47197 * 59.99404 * 12 11 10 34 34 H 0.97004 * 119.99965 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9199 1.0179 0.0000 4 6 2.0857 -0.8069 -1.1899 5 6 2.2720 -2.2543 -0.8069 6 6 2.3527 -2.5036 0.5574 7 6 2.5371 -3.7908 1.0423 8 6 2.6307 -4.8548 0.1674 9 6 2.5477 -4.6214 -1.1931 10 6 2.3713 -3.3430 -1.6745 11 6 2.2846 -3.1160 -3.1618 12 6 3.6660 -2.7411 -3.7019 13 6 3.5792 -2.5136 -5.1891 14 1 2.6334 -2.6256 -5.6982 15 6 4.7075 -2.1634 -5.9000 16 7 5.8594 -2.0275 -5.2801 17 14 4.6000 -1.8821 -7.7435 18 1 4.2917 -0.4539 -8.0091 19 1 5.8973 -2.2341 -8.3745 20 1 3.5253 -2.7346 -8.3125 21 16 2.1898 -0.9592 1.4157 22 1 -0.3633 0.4718 0.9130 23 1 -0.3634 0.5547 -0.8652 24 1 -0.3633 -1.0266 -0.0479 25 1 1.3884 -0.7427 -2.0251 26 1 3.0458 -0.3881 -1.4915 27 1 2.6047 -3.9610 2.1066 28 1 2.7705 -5.8582 0.5414 29 1 2.6221 -5.4482 -1.8839 30 1 1.9392 -4.0280 -3.6488 31 1 1.5829 -2.3073 -3.3656 32 1 4.0113 -1.8292 -3.2148 33 1 4.3677 -3.5500 -3.4980 34 1 6.6531 -1.7807 -5.7802 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260067651.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:56 Heat of formation + Delta-G solvation = -15.479363 kcal Electronic energy + Delta-G solvation = -15506.704007 eV Core-core repulsion = 13107.668449 eV Total energy + Delta-G solvation = -2399.035557 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.62979 -36.39013 -35.99159 -33.98322 -31.89194 -30.61660 -27.89545 -26.76203 -24.18717 -23.56071 -22.02019 -21.54927 -18.66391 -17.99690 -16.75726 -16.55126 -16.35108 -16.09256 -15.87573 -14.74156 -14.52948 -14.28187 -14.17456 -13.82686 -13.74133 -13.49613 -13.13305 -12.86110 -12.60352 -12.53474 -12.33502 -12.19311 -11.99209 -11.74840 -11.59344 -11.16511 -11.01826 -10.56656 -10.51526 -9.48287 -8.40698 -8.20444 -6.32782 0.22466 0.38423 0.63369 1.24462 1.39969 1.41074 1.52321 2.40026 2.70342 3.12569 3.45041 3.69902 3.85805 3.93402 4.07991 4.28492 4.37279 4.47345 4.53767 4.63045 4.71216 4.84799 4.85223 4.88040 4.90834 5.05174 5.21404 5.22053 5.30133 5.43806 5.48392 5.53612 5.82395 5.82507 5.99117 6.21382 6.84099 7.36965 8.90987 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.026154 B = 0.005949 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.344223 B = 4705.845791 C = 5279.909582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.042 4.042 3 H 0.136 0.864 4 C -0.086 4.086 5 C -0.115 4.115 6 C -0.094 4.094 7 C -0.107 4.107 8 C -0.097 4.097 9 C -0.132 4.132 10 C -0.063 4.063 11 C -0.066 4.066 12 C 0.042 3.958 13 C -0.542 4.542 14 H 0.063 0.937 15 C 0.001 3.999 16 N -0.934 5.934 17 Si 0.964 3.036 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.261 1.261 21 S -0.173 6.173 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.050 0.950 25 H 0.094 0.906 26 H 0.075 0.925 27 H 0.145 0.855 28 H 0.163 0.837 29 H 0.133 0.867 30 H 0.065 0.935 31 H 0.064 0.936 32 H -0.011 1.011 33 H -0.014 1.014 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.472 0.441 11.734 15.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.170 4.170 3 H 0.154 0.846 4 C -0.123 4.123 5 C -0.120 4.120 6 C -0.206 4.206 7 C -0.130 4.130 8 C -0.116 4.116 9 C -0.151 4.151 10 C -0.064 4.064 11 C -0.103 4.103 12 C 0.005 3.995 13 C -0.580 4.580 14 H 0.081 0.919 15 C -0.197 4.197 16 N -0.574 5.574 17 Si 0.789 3.211 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.186 1.186 21 S 0.068 5.932 22 H 0.100 0.900 23 H 0.104 0.896 24 H 0.069 0.931 25 H 0.112 0.888 26 H 0.093 0.907 27 H 0.162 0.838 28 H 0.180 0.820 29 H 0.151 0.849 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.008 0.992 33 H 0.004 0.996 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.065 0.960 12.948 16.428 hybrid contribution 0.411 -0.285 -2.238 2.293 sum -9.654 0.674 10.710 14.435 Atomic orbital electron populations 1.21939 0.90470 1.02687 1.04007 1.24173 1.00475 1.01163 0.91184 0.84590 1.20977 1.02479 0.89962 0.98921 1.20813 1.03161 0.95319 0.92726 1.22203 1.05827 0.97351 0.95192 1.20671 1.01896 0.89573 1.00907 1.21383 0.98289 0.99840 0.92119 1.21161 1.01090 0.96090 0.96802 1.20053 0.97727 0.92916 0.95742 1.20593 0.98570 1.01300 0.89870 1.18835 0.91690 0.94376 0.94589 1.21682 0.95204 1.46794 0.94324 0.91864 1.25977 0.94948 0.95023 1.03733 1.70115 1.00299 1.48960 1.37996 0.85457 0.77710 0.78845 0.79111 1.19687 1.20909 1.18556 1.85724 1.82050 1.04033 1.21347 0.90039 0.89597 0.93126 0.88797 0.90708 0.83766 0.81969 0.84908 0.91647 0.91766 0.99212 0.99608 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.30 71.98 0.67 -1.94 16 2 C -0.04 -1.03 4.04 30.98 0.13 -0.90 16 3 H 0.14 2.80 8.14 -2.39 -0.02 2.78 16 4 C -0.09 -2.71 5.32 30.29 0.16 -2.55 16 5 C -0.12 -4.07 5.94 -19.33 -0.11 -4.18 16 6 C -0.09 -3.02 6.48 22.56 0.15 -2.88 16 7 C -0.11 -3.03 10.05 22.36 0.22 -2.81 16 8 C -0.10 -2.62 10.08 22.24 0.22 -2.39 16 9 C -0.13 -4.29 9.60 22.16 0.21 -4.08 16 10 C -0.06 -2.35 5.15 -19.66 -0.10 -2.45 16 11 C -0.07 -2.76 4.98 29.84 0.15 -2.61 16 12 C 0.04 2.24 4.95 29.84 0.15 2.39 16 13 C -0.54 -30.67 9.11 25.60 0.23 -30.43 16 14 H 0.06 3.40 7.74 -2.91 -0.02 3.37 16 15 C 0.00 0.06 5.46 84.66 0.46 0.52 16 16 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 17 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 20 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 21 S -0.17 -4.91 22.56 -56.49 -1.27 -6.19 16 22 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 24 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.09 2.87 6.88 -2.39 -0.02 2.86 16 26 H 0.07 2.66 8.14 -2.38 -0.02 2.65 16 27 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 28 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 29 H 0.13 3.99 8.04 -2.91 -0.02 3.97 16 30 H 0.06 2.61 8.03 -2.39 -0.02 2.59 16 31 H 0.06 2.57 6.94 -2.39 -0.02 2.55 16 32 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 33 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 34 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -66.06 296.22 4.65 -61.41 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.07 Total: 10.04 kcal Atomic # 6 Polarization: -56.86 SS G_CDS: 2.54 Total: -54.32 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.28 Total: -56.94 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: -4.91 SS G_CDS: -1.27 Total: -6.19 kcal Total: -66.06 4.65 -61.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260067651.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.933 kcal (2) G-P(sol) polarization free energy of solvation -66.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds