Wall clock time and date at job start Mon Mar 30 2020 06:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46973 * 180.02562 * 10 9 7 12 12 C 1.38237 * 120.00141 * 269.72754 * 11 10 9 13 13 C 1.38229 * 120.00307 * 179.76959 * 12 11 10 14 14 C 1.38238 * 119.99783 * 0.48344 * 13 12 11 15 15 C 1.50696 * 120.00077 * 179.76962 * 14 13 12 16 16 H 1.08995 * 110.62184 * 161.64405 * 15 14 13 17 17 C 1.54907 * 110.69717 * 284.91206 * 15 14 13 18 18 O 1.44784 * 101.72530 * 153.95678 * 17 15 14 19 19 C 1.43751 * 104.81481 * 323.89646 * 18 17 15 20 20 O 1.43369 * 108.79100 * 24.31070 * 19 18 17 21 21 C 1.38235 * 120.00126 * 359.78939 * 14 13 12 22 22 C 1.38235 * 119.99868 * 359.96172 * 21 14 13 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 25 25 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 26 26 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 27 27 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 28 28 H 1.08004 * 119.99804 * 359.97438 * 12 11 10 29 29 H 1.08004 * 120.00328 * 180.25147 * 13 12 11 30 30 H 1.08999 * 110.98067 * 272.06722 * 17 15 14 31 31 H 1.09002 * 110.98239 * 35.85135 * 17 15 14 32 32 H 1.09004 * 109.63253 * 264.43250 * 19 18 17 33 33 H 1.09003 * 109.63258 * 144.18594 * 19 18 17 34 34 H 1.07997 * 120.00188 * 179.97438 * 21 14 13 35 35 H 1.07995 * 120.00404 * 180.02562 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4919 -4.9671 -0.0001 12 6 1.1508 -5.5689 1.1967 13 6 0.4555 -6.7636 1.1962 14 6 0.1099 -7.3616 -0.0012 15 6 -0.6436 -8.6667 -0.0019 16 1 -1.1137 -8.8381 -0.9702 17 6 0.2953 -9.8412 0.3705 18 8 -0.6375 -10.7987 0.9265 19 6 -1.6091 -10.0023 1.6252 20 8 -1.6267 -8.6880 1.0528 21 6 0.4559 -6.7628 -1.1981 22 6 1.1467 -5.5654 -1.1976 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6241 -2.5566 0.8903 25 1 0.6247 -2.5571 -0.8897 26 1 2.8720 -3.6043 -0.8894 27 1 2.8720 -3.6043 0.8906 28 1 1.4247 -5.1039 2.1323 29 1 0.1854 -7.2317 2.1313 30 1 0.7866 -10.2440 -0.5151 31 1 1.0289 -9.5333 1.1157 32 1 -1.3405 -9.9389 2.6798 33 1 -2.5946 -10.4576 1.5273 34 1 0.1863 -7.2302 -2.1336 35 1 1.4167 -5.0973 -2.1326 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260074765.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:02 Heat of formation + Delta-G solvation = -84.381197 kcal Electronic energy + Delta-G solvation = -17222.190731 eV Core-core repulsion = 14377.414495 eV Total energy + Delta-G solvation = -2844.776236 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.73634 -38.92817 -35.39666 -34.47699 -32.71603 -30.72324 -30.54006 -27.96049 -25.13928 -24.78041 -23.20540 -22.50000 -21.54467 -20.12891 -17.59584 -17.25425 -16.74253 -16.21579 -15.46016 -15.05726 -15.01045 -14.32044 -13.72752 -13.66950 -13.32865 -13.25899 -13.03158 -12.88516 -12.61290 -12.45548 -12.02073 -11.39000 -10.98044 -10.77236 -10.65494 -10.54214 -10.19992 -10.00660 -9.99400 -9.86778 -8.70325 -8.64186 -8.32712 -8.16912 -6.36216 -4.06029 1.46838 1.63090 3.19149 3.43700 3.45708 3.64582 3.81371 3.99298 4.35970 4.54661 4.58955 4.60547 4.95860 5.05229 5.13456 5.19351 5.22424 5.36966 5.39498 5.41227 5.51986 5.75167 5.82657 6.06647 6.16073 6.35614 6.47282 6.62000 6.64833 6.79897 6.82134 6.98271 7.23945 7.39248 7.52776 8.19282 8.45612 8.87483 9.66772 11.04282 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.056417 B = 0.003760 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.182663 B = 7445.327192 C = 7584.529165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 1.069 2.931 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.605 4.605 8 H 0.049 0.951 9 C 0.017 3.983 10 C -0.075 4.075 11 C -0.050 4.050 12 C -0.123 4.123 13 C -0.091 4.091 14 C -0.121 4.121 15 C 0.103 3.897 16 H 0.093 0.907 17 C 0.027 3.973 18 O -0.386 6.386 19 C 0.204 3.796 20 O -0.379 6.379 21 C -0.102 4.102 22 C -0.121 4.121 23 H 0.269 0.731 24 H 0.009 0.991 25 H 0.008 0.992 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.468 -19.468 0.481 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.189 4.189 3 Si 0.897 3.103 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.643 4.643 8 H 0.068 0.932 9 C -0.020 4.020 10 C -0.112 4.112 11 C -0.050 4.050 12 C -0.141 4.141 13 C -0.110 4.110 14 C -0.121 4.121 15 C 0.046 3.954 16 H 0.111 0.889 17 C -0.050 4.050 18 O -0.307 6.307 19 C 0.090 3.910 20 O -0.300 6.300 21 C -0.121 4.121 22 C -0.139 4.139 23 H 0.079 0.921 24 H 0.027 0.973 25 H 0.027 0.973 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.141 0.859 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.137 0.863 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.139 -17.888 0.536 17.896 hybrid contribution 0.174 -1.644 0.045 1.654 sum 0.312 -19.532 0.581 19.543 Atomic orbital electron populations 1.70777 1.06899 1.30668 1.46448 1.25866 0.96552 1.02742 0.93761 0.83543 0.74882 0.75330 0.76506 1.20753 1.21429 1.21436 1.22058 0.94292 0.91956 1.56009 0.93238 1.19196 0.94298 0.92242 0.96286 1.20732 0.98115 0.90727 1.01641 1.20482 0.95756 0.96037 0.92693 1.21100 0.99427 0.95340 0.98196 1.20841 0.97309 0.95618 0.97183 1.19361 1.02066 0.96428 0.94244 1.22482 0.87516 0.93418 0.91991 0.88930 1.24485 0.92794 0.87792 0.99899 1.89193 1.39403 1.30597 1.71467 1.24493 0.93376 0.78400 0.94746 1.88943 1.59351 1.30929 1.50812 1.20833 0.98885 0.95679 0.96658 1.21050 0.99531 0.95154 0.98208 0.92055 0.97319 0.97330 0.91955 0.91964 0.85948 0.86397 0.87022 0.90135 0.91208 0.89087 0.86273 0.85829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.35 13.65 55.43 0.76 -27.60 16 2 C 0.01 0.43 5.46 -17.82 -0.10 0.33 16 3 Si 1.07 25.38 29.90 -169.99 -5.08 20.29 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.60 -17.34 9.11 -34.44 -0.31 -17.66 16 8 H 0.05 1.38 7.74 -52.48 -0.41 0.97 16 9 C 0.02 0.43 4.27 -27.88 -0.12 0.31 16 10 C -0.07 -1.55 5.28 -27.89 -0.15 -1.70 16 11 C -0.05 -0.89 5.13 -104.62 -0.54 -1.43 16 12 C -0.12 -2.03 9.70 -39.59 -0.38 -2.41 16 13 C -0.09 -1.34 9.21 -39.58 -0.36 -1.71 16 14 C -0.12 -1.65 5.07 -104.62 -0.53 -2.18 16 15 C 0.10 1.18 3.89 -26.88 -0.10 1.08 16 16 H 0.09 0.96 8.04 -51.93 -0.42 0.54 16 17 C 0.03 0.26 7.37 38.16 0.28 0.54 16 18 O -0.39 -4.20 11.70 -59.04 -0.69 -4.89 16 19 C 0.20 2.04 8.62 101.05 0.87 2.91 16 20 O -0.38 -4.85 10.62 -59.04 -0.63 -5.48 16 21 C -0.10 -1.41 9.69 -39.58 -0.38 -1.79 16 22 C -0.12 -1.95 9.70 -39.58 -0.38 -2.34 16 23 H 0.27 8.38 7.22 -40.82 -0.29 8.09 16 24 H 0.01 0.23 8.01 -51.93 -0.42 -0.18 16 25 H 0.01 0.23 8.01 -51.93 -0.42 -0.19 16 26 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 27 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 28 H 0.12 1.93 8.06 -52.48 -0.42 1.51 16 29 H 0.12 1.56 7.78 -52.48 -0.41 1.15 16 30 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.76 7.90 -51.93 -0.41 0.35 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.12 1.30 8.05 -52.49 -0.42 0.87 16 35 H 0.12 1.88 8.06 -52.49 -0.42 1.45 16 LS Contribution 299.17 15.07 4.51 4.51 Total: -1.00 -32.23 299.17 -8.29 -40.52 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -4.94 Total: -1.31 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: -2.21 Total: -26.04 kcal Atomic # 7 Polarization: -28.35 SS G_CDS: 0.76 Total: -27.60 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -1.32 Total: -10.37 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.08 Total: 20.29 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.23 -8.29 -40.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260074765.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.860 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds