Wall clock time and date at job start Mon Mar 30 2020 06:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46973 * 180.02562 * 10 9 7 12 12 C 1.38237 * 120.00141 * 269.72754 * 11 10 9 13 13 C 1.38229 * 120.00307 * 179.76959 * 12 11 10 14 14 C 1.38238 * 119.99783 * 0.48344 * 13 12 11 15 15 C 1.50696 * 120.00077 * 179.76962 * 14 13 12 16 16 H 1.08995 * 110.62184 * 161.64405 * 15 14 13 17 17 C 1.54907 * 110.69717 * 284.91206 * 15 14 13 18 18 O 1.44784 * 101.72530 * 153.95678 * 17 15 14 19 19 C 1.43751 * 104.81481 * 323.89646 * 18 17 15 20 20 O 1.43369 * 108.79100 * 24.31070 * 19 18 17 21 21 C 1.38235 * 120.00126 * 359.78939 * 14 13 12 22 22 C 1.38235 * 119.99868 * 359.96172 * 21 14 13 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 25 25 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 26 26 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 27 27 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 28 28 H 1.08004 * 119.99804 * 359.97438 * 12 11 10 29 29 H 1.08004 * 120.00328 * 180.25147 * 13 12 11 30 30 H 1.08999 * 110.98067 * 272.06722 * 17 15 14 31 31 H 1.09002 * 110.98239 * 35.85135 * 17 15 14 32 32 H 1.09004 * 109.63253 * 264.43250 * 19 18 17 33 33 H 1.09003 * 109.63258 * 144.18594 * 19 18 17 34 34 H 1.07997 * 120.00188 * 179.97438 * 21 14 13 35 35 H 1.07995 * 120.00404 * 180.02562 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4919 -4.9671 -0.0001 12 6 1.1508 -5.5689 1.1967 13 6 0.4555 -6.7636 1.1962 14 6 0.1099 -7.3616 -0.0012 15 6 -0.6436 -8.6667 -0.0019 16 1 -1.1137 -8.8381 -0.9702 17 6 0.2953 -9.8412 0.3705 18 8 -0.6375 -10.7987 0.9265 19 6 -1.6091 -10.0023 1.6252 20 8 -1.6267 -8.6880 1.0528 21 6 0.4559 -6.7628 -1.1981 22 6 1.1467 -5.5654 -1.1976 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6241 -2.5566 0.8903 25 1 0.6247 -2.5571 -0.8897 26 1 2.8720 -3.6043 -0.8894 27 1 2.8720 -3.6043 0.8906 28 1 1.4247 -5.1039 2.1323 29 1 0.1854 -7.2317 2.1313 30 1 0.7866 -10.2440 -0.5151 31 1 1.0289 -9.5333 1.1157 32 1 -1.3405 -9.9389 2.6798 33 1 -2.5946 -10.4576 1.5273 34 1 0.1863 -7.2302 -2.1336 35 1 1.4167 -5.0973 -2.1326 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260074765.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:01 Heat of formation + Delta-G solvation = -103.540659 kcal Electronic energy + Delta-G solvation = -17223.021548 eV Core-core repulsion = 14377.414495 eV Total energy + Delta-G solvation = -2845.607053 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.61870 -40.10046 -36.55724 -36.01695 -34.37820 -31.97798 -31.88595 -29.32042 -26.63977 -25.75104 -24.63013 -23.72730 -23.11419 -21.46620 -18.94472 -18.44248 -18.16547 -17.13987 -16.47166 -16.30180 -16.12812 -15.65427 -15.39171 -14.86705 -14.79486 -14.47838 -14.35269 -14.15608 -13.89741 -13.68880 -13.50523 -12.81129 -12.68708 -12.19801 -12.10655 -11.96843 -11.87888 -11.75159 -11.34911 -10.75501 -10.67745 -10.56442 -9.89363 -9.51044 -8.71065 -6.42472 0.25597 0.43040 1.52292 1.61164 1.80505 2.35033 2.56421 2.76863 3.11270 3.14165 3.48649 3.63866 3.78456 3.97217 4.01200 4.09084 4.24581 4.33912 4.41641 4.47120 4.52434 4.62234 4.65002 4.68497 4.80485 4.85191 5.06190 5.08926 5.31164 5.34632 5.42287 5.51527 5.77732 5.95350 5.95826 6.01396 6.16333 6.53503 7.40822 8.69092 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.056417 B = 0.003760 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.182663 B = 7445.327192 C = 7584.529165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.040 4.040 3 Si 1.120 2.880 4 H -0.284 1.284 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.622 4.622 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.061 4.061 11 C -0.079 4.079 12 C -0.135 4.135 13 C -0.095 4.095 14 C -0.112 4.112 15 C 0.100 3.900 16 H 0.110 0.890 17 C 0.030 3.970 18 O -0.396 6.396 19 C 0.199 3.801 20 O -0.403 6.403 21 C -0.097 4.097 22 C -0.131 4.131 23 H 0.253 0.747 24 H -0.016 1.016 25 H -0.013 1.013 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.120 0.880 29 H 0.132 0.868 30 H 0.136 0.864 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.154 0.846 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.049 -20.858 0.026 20.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.237 4.237 3 Si 0.940 3.060 4 H -0.209 1.209 5 H -0.193 1.193 6 H -0.191 1.191 7 C -0.659 4.659 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.098 4.098 11 C -0.080 4.080 12 C -0.153 4.153 13 C -0.113 4.113 14 C -0.112 4.112 15 C 0.044 3.956 16 H 0.127 0.873 17 C -0.046 4.046 18 O -0.316 6.316 19 C 0.085 3.915 20 O -0.325 6.325 21 C -0.114 4.114 22 C -0.149 4.149 23 H 0.063 0.937 24 H 0.002 0.998 25 H 0.005 0.995 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.138 0.862 29 H 0.150 0.850 30 H 0.154 0.846 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.126 0.874 34 H 0.172 0.828 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.730 -19.316 0.084 19.330 hybrid contribution -0.063 -1.329 0.204 1.346 sum 0.667 -20.645 0.288 20.657 Atomic orbital electron populations 1.70922 1.08071 1.29747 1.48749 1.27535 0.96568 1.07059 0.92580 0.82915 0.74099 0.70785 0.78180 1.20940 1.19253 1.19139 1.22528 0.94879 0.93276 1.55248 0.92671 1.19084 0.94710 0.93907 0.93941 1.20454 0.97042 0.90527 1.01780 1.20297 0.97790 0.95611 0.94253 1.21167 1.00115 0.96289 0.97692 1.21009 0.96810 0.94952 0.98495 1.19689 1.00786 0.97027 0.93718 1.22601 0.87775 0.92606 0.92656 0.87269 1.24554 0.92214 0.86965 1.00864 1.89189 1.39770 1.31020 1.71642 1.24726 0.94201 0.77459 0.95085 1.88918 1.59701 1.32531 1.51333 1.21161 0.97433 0.94571 0.98278 1.21204 0.99903 0.96178 0.97607 0.93740 0.99797 0.99490 0.91589 0.91946 0.86200 0.85048 0.84617 0.90120 0.90092 0.87418 0.82797 0.85443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.75 13.65 21.45 0.29 -59.46 16 2 C -0.04 -2.39 5.46 84.65 0.46 -1.93 16 3 Si 1.12 50.65 29.90 68.60 2.05 52.70 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 6 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 7 C -0.62 -36.24 9.11 25.60 0.23 -36.01 16 8 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 9 C 0.02 1.11 4.27 29.85 0.13 1.24 16 10 C -0.06 -2.58 5.28 29.85 0.16 -2.42 16 11 C -0.08 -2.90 5.13 -19.87 -0.10 -3.00 16 12 C -0.13 -4.49 9.70 22.27 0.22 -4.28 16 13 C -0.09 -2.68 9.21 22.27 0.21 -2.48 16 14 C -0.11 -2.82 5.07 -19.87 -0.10 -2.92 16 15 C 0.10 2.03 3.89 30.50 0.12 2.15 16 16 H 0.11 1.87 8.04 -2.39 -0.02 1.85 16 17 C 0.03 0.49 7.37 72.63 0.54 1.03 16 18 O -0.40 -7.54 11.70 -126.22 -1.48 -9.02 16 19 C 0.20 3.51 8.62 113.37 0.98 4.49 16 20 O -0.40 -9.44 10.62 -126.22 -1.34 -10.78 16 21 C -0.10 -2.44 9.69 22.27 0.22 -2.23 16 22 C -0.13 -4.13 9.70 22.27 0.22 -3.91 16 23 H 0.25 16.48 7.22 -92.71 -0.67 15.81 16 24 H -0.02 -0.95 8.01 -2.39 -0.02 -0.97 16 25 H -0.01 -0.76 8.01 -2.38 -0.02 -0.78 16 26 H 0.07 2.69 8.08 -2.39 -0.02 2.67 16 27 H 0.06 2.58 8.08 -2.39 -0.02 2.56 16 28 H 0.12 3.91 8.06 -2.91 -0.02 3.89 16 29 H 0.13 3.30 7.78 -2.91 -0.02 3.28 16 30 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.08 1.32 7.90 -2.39 -0.02 1.30 16 32 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.15 2.78 8.05 -2.91 -0.02 2.76 16 35 H 0.13 3.82 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -70.28 299.17 3.95 -66.32 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 1.16 Total: 10.50 kcal Atomic # 6 Polarization: -53.53 SS G_CDS: 3.26 Total: -50.27 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: 0.29 Total: -59.46 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -2.82 Total: -19.79 kcal Atomic # 14 Polarization: 50.65 SS G_CDS: 2.05 Total: 52.70 kcal Total: -70.28 3.95 -66.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260074765.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.217 kcal (2) G-P(sol) polarization free energy of solvation -70.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds