Wall clock time and date at job start Mon Mar 30 2020 06:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 110.96602 * 2 1 4 4 C 1.54154 * 111.09788 * 124.13373 * 2 1 3 5 5 C 1.50875 * 110.47142 * 89.55767 * 4 2 1 6 6 C 1.39588 * 126.83369 * 200.55925 * 5 4 2 7 7 C 1.37701 * 121.05330 * 180.39322 * 6 5 4 8 8 C 1.38321 * 120.53856 * 0.56332 * 7 6 5 9 9 C 1.50697 * 120.35150 * 179.55157 * 8 7 6 10 10 C 1.52996 * 109.47491 * 269.72846 * 9 8 7 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 C 1.38025 * 119.29478 * 359.28919 * 8 7 6 20 20 C 1.38824 * 120.16319 * 0.26711 * 19 8 7 21 21 S 1.77430 * 130.57592 * 180.63481 * 20 19 8 22 22 H 1.08989 * 109.47189 * 295.87000 * 1 2 3 23 23 H 1.09006 * 109.46975 * 55.86841 * 1 2 3 24 24 H 1.09003 * 109.47130 * 175.86319 * 1 2 3 25 25 H 1.09005 * 109.28394 * 329.28358 * 4 2 1 26 26 H 1.09003 * 109.22048 * 209.78914 * 4 2 1 27 27 H 1.08006 * 119.47481 * 0.70191 * 6 5 4 28 28 H 1.08008 * 119.73394 * 180.31065 * 7 6 5 29 29 H 1.09004 * 109.46801 * 149.72885 * 9 8 7 30 30 H 1.09000 * 109.47461 * 29.73417 * 9 8 7 31 31 H 1.09004 * 109.47066 * 60.00201 * 10 9 8 32 32 H 1.08994 * 109.47405 * 300.00031 * 10 9 8 33 33 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 34 34 H 1.08003 * 119.91999 * 180.25046 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9200 1.0178 0.0000 4 6 2.0849 -0.8070 1.1904 5 6 2.2647 -2.2554 0.8081 6 6 2.3538 -3.3451 1.6758 7 6 2.5264 -4.6238 1.1949 8 6 2.6272 -4.8556 -0.1650 9 6 2.8261 -6.2556 -0.6861 10 6 4.3233 -6.5523 -0.7927 11 6 4.5221 -7.9525 -1.3132 12 1 3.6663 -8.5690 -1.5453 13 6 5.7967 -8.4443 -1.4992 14 7 6.8389 -7.6935 -1.2169 15 14 6.0432 -10.1772 -2.1517 16 1 6.1079 -10.1431 -3.6349 17 1 7.3107 -10.7331 -1.6136 18 1 4.9069 -11.0330 -1.7254 19 6 2.5383 -3.7918 -1.0398 20 6 2.3552 -2.5038 -0.5554 21 16 2.1910 -0.9601 -1.4146 22 1 -0.3633 0.4484 0.9246 23 1 -0.3633 0.5767 -0.8507 24 1 -0.3633 -1.0250 -0.0741 25 1 1.3893 -0.7391 2.0269 26 1 3.0475 -0.3912 1.4883 27 1 2.2812 -3.1834 2.7413 28 1 2.5875 -5.4521 1.8854 29 1 2.3670 -6.3454 -1.6707 30 1 2.3625 -6.9670 -0.0028 31 1 4.7824 -6.4625 0.1919 32 1 4.7870 -5.8410 -1.4760 33 1 7.7357 -8.0397 -1.3473 34 1 2.6117 -3.9617 -2.1039 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260085746.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:59 Heat of formation + Delta-G solvation = -1.150404 kcal Electronic energy + Delta-G solvation = -15055.720947 eV Core-core repulsion = 12657.306740 eV Total energy + Delta-G solvation = -2398.414207 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.30348 -35.91124 -33.68285 -31.96491 -30.59684 -29.55532 -26.87791 -24.55391 -23.13904 -22.04926 -21.08088 -19.96939 -17.19194 -16.30098 -15.34814 -15.22003 -15.16555 -14.54372 -14.42035 -13.62983 -13.38379 -12.89562 -12.64958 -12.54039 -12.49279 -12.18877 -11.66069 -11.53793 -11.30962 -10.97935 -10.91215 -10.76352 -10.53250 -10.01662 -9.81066 -9.70520 -9.31464 -9.11063 -8.35408 -8.17129 -7.28134 -5.99907 -4.03291 1.41863 1.61789 1.68751 2.33893 3.32313 3.38533 3.41624 3.93979 4.35699 4.46027 4.56956 4.69690 5.07940 5.10443 5.35698 5.38356 5.41293 5.44033 5.57968 5.59774 5.72456 5.77226 5.92212 5.95212 6.23183 6.39028 6.52317 6.62004 6.66294 6.94957 7.04612 7.26023 7.67033 7.80044 7.99461 8.39463 9.03612 9.60846 11.11121 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.046561 B = 0.004319 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.215319 B = 6481.166443 C = 6670.237367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.057 4.057 3 H 0.116 0.884 4 C -0.078 4.078 5 C -0.128 4.128 6 C -0.094 4.094 7 C -0.118 4.118 8 C -0.038 4.038 9 C -0.079 4.079 10 C 0.030 3.970 11 C -0.523 4.523 12 H 0.056 0.944 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.088 4.088 20 C -0.073 4.073 21 S -0.161 6.161 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.117 0.883 28 H 0.126 0.874 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.261 0.739 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.737 14.713 5.185 19.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.185 4.185 3 H 0.134 0.866 4 C -0.116 4.116 5 C -0.134 4.134 6 C -0.113 4.113 7 C -0.138 4.138 8 C -0.040 4.040 9 C -0.117 4.117 10 C -0.007 4.007 11 C -0.561 4.561 12 H 0.075 0.925 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.111 4.111 20 C -0.185 4.185 21 S 0.081 5.919 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.103 0.897 26 H 0.106 0.894 27 H 0.135 0.865 28 H 0.144 0.856 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.304 15.188 3.950 19.341 hybrid contribution 0.187 -1.349 0.845 1.602 sum -11.117 13.839 4.794 18.388 Atomic orbital electron populations 1.21966 0.92248 1.03188 1.02301 1.24008 0.99228 1.01095 0.94177 0.86580 1.20903 1.02313 0.90658 0.97737 1.20621 1.05253 0.94620 0.92868 1.20694 1.00480 0.91527 0.98622 1.20937 1.00849 0.96482 0.95506 1.20323 0.93941 0.96713 0.92977 1.20855 1.01694 0.89186 0.99929 1.19080 0.87656 0.96518 0.97489 1.21246 0.92100 0.99109 1.43694 0.92539 1.25025 0.96141 0.97630 0.95584 1.69977 0.98170 1.36579 1.48559 0.86588 0.77579 0.84674 0.79129 1.20643 1.21219 1.19835 1.20362 1.01301 0.89310 1.00161 1.21852 1.05664 0.95958 0.95073 1.86038 1.81330 1.04489 1.20031 0.91547 0.91592 0.91693 0.89672 0.89393 0.86488 0.85580 0.91985 0.91854 0.96353 0.96383 0.92961 0.85690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.31 37.16 0.35 -0.85 16 2 C -0.06 -0.57 4.04 -26.13 -0.11 -0.68 16 3 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.08 -0.84 5.82 -27.19 -0.16 -1.00 16 5 C -0.13 -1.86 5.98 -103.79 -0.62 -2.48 16 6 C -0.09 -1.36 9.97 -39.27 -0.39 -1.75 16 7 C -0.12 -1.95 9.67 -39.75 -0.38 -2.34 16 8 C -0.04 -0.70 5.13 -104.67 -0.54 -1.24 16 9 C -0.08 -1.64 5.30 -27.89 -0.15 -1.79 16 10 C 0.03 0.77 4.96 -27.88 -0.14 0.63 16 11 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 12 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 15 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 C -0.09 -1.59 9.73 -39.44 -0.38 -1.98 16 20 C -0.07 -1.20 6.48 -39.12 -0.25 -1.46 16 21 S -0.16 -2.27 22.56 -107.50 -2.43 -4.70 16 22 H 0.07 0.45 8.14 -51.94 -0.42 0.02 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.08 0.75 7.92 -51.93 -0.41 0.33 16 26 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 28 H 0.13 1.93 8.06 -52.48 -0.42 1.50 16 29 H 0.06 1.25 8.09 -51.93 -0.42 0.83 16 30 H 0.06 1.25 8.09 -51.93 -0.42 0.83 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.13 2.22 8.06 -52.48 -0.42 1.80 16 LS Contribution 298.99 15.07 4.51 4.51 Total: -1.00 -30.88 298.99 -10.41 -41.29 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -5.02 Total: -2.89 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: -3.19 Total: -28.50 kcal Atomic # 7 Polarization: -27.12 SS G_CDS: 0.74 Total: -26.38 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -2.27 SS G_CDS: -2.43 Total: -4.70 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.88 -10.41 -41.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260085746.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.142 kcal (2) G-P(sol) polarization free energy of solvation -30.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds