Wall clock time and date at job start Mon Mar 30 2020 06:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 110.96602 * 2 1 4 4 C 1.54154 * 111.09788 * 124.13373 * 2 1 3 5 5 C 1.50875 * 110.47142 * 89.55767 * 4 2 1 6 6 C 1.39588 * 126.83369 * 200.55925 * 5 4 2 7 7 C 1.37701 * 121.05330 * 180.39322 * 6 5 4 8 8 C 1.38321 * 120.53856 * 0.56332 * 7 6 5 9 9 C 1.50697 * 120.35150 * 179.55157 * 8 7 6 10 10 C 1.52996 * 109.47491 * 269.72846 * 9 8 7 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 C 1.38025 * 119.29478 * 359.28919 * 8 7 6 20 20 C 1.38824 * 120.16319 * 0.26711 * 19 8 7 21 21 S 1.77430 * 130.57592 * 180.63481 * 20 19 8 22 22 H 1.08989 * 109.47189 * 295.87000 * 1 2 3 23 23 H 1.09006 * 109.46975 * 55.86841 * 1 2 3 24 24 H 1.09003 * 109.47130 * 175.86319 * 1 2 3 25 25 H 1.09005 * 109.28394 * 329.28358 * 4 2 1 26 26 H 1.09003 * 109.22048 * 209.78914 * 4 2 1 27 27 H 1.08006 * 119.47481 * 0.70191 * 6 5 4 28 28 H 1.08008 * 119.73394 * 180.31065 * 7 6 5 29 29 H 1.09004 * 109.46801 * 149.72885 * 9 8 7 30 30 H 1.09000 * 109.47461 * 29.73417 * 9 8 7 31 31 H 1.09004 * 109.47066 * 60.00201 * 10 9 8 32 32 H 1.08994 * 109.47405 * 300.00031 * 10 9 8 33 33 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 34 34 H 1.08003 * 119.91999 * 180.25046 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9200 1.0178 0.0000 4 6 2.0849 -0.8070 1.1904 5 6 2.2647 -2.2554 0.8081 6 6 2.3538 -3.3451 1.6758 7 6 2.5264 -4.6238 1.1949 8 6 2.6272 -4.8556 -0.1650 9 6 2.8261 -6.2556 -0.6861 10 6 4.3233 -6.5523 -0.7927 11 6 4.5221 -7.9525 -1.3132 12 1 3.6663 -8.5690 -1.5453 13 6 5.7967 -8.4443 -1.4992 14 7 6.8389 -7.6935 -1.2169 15 14 6.0432 -10.1772 -2.1517 16 1 6.1079 -10.1431 -3.6349 17 1 7.3107 -10.7331 -1.6136 18 1 4.9069 -11.0330 -1.7254 19 6 2.5383 -3.7918 -1.0398 20 6 2.3552 -2.5038 -0.5554 21 16 2.1910 -0.9601 -1.4146 22 1 -0.3633 0.4484 0.9246 23 1 -0.3633 0.5767 -0.8507 24 1 -0.3633 -1.0250 -0.0741 25 1 1.3893 -0.7391 2.0269 26 1 3.0475 -0.3912 1.4883 27 1 2.2812 -3.1834 2.7413 28 1 2.5875 -5.4521 1.8854 29 1 2.3670 -6.3454 -1.6707 30 1 2.3625 -6.9670 -0.0028 31 1 4.7824 -6.4625 0.1919 32 1 4.7870 -5.8410 -1.4760 33 1 7.7357 -8.0397 -1.3473 34 1 2.6117 -3.9617 -2.1039 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260085746.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:59 Heat of formation + Delta-G solvation = -16.577627 kcal Electronic energy + Delta-G solvation = -15056.389922 eV Core-core repulsion = 12657.306740 eV Total energy + Delta-G solvation = -2399.083181 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.53166 -37.07623 -35.47837 -33.63680 -31.83429 -31.01376 -28.24145 -26.18820 -24.31498 -23.55036 -22.35668 -21.34842 -18.67773 -18.15688 -16.59238 -16.53307 -16.39611 -16.03464 -15.67952 -14.83262 -14.56025 -14.46947 -14.08615 -14.00317 -13.62736 -13.51896 -13.15259 -12.85923 -12.75025 -12.37641 -12.25083 -12.13282 -12.05325 -11.68300 -11.61545 -11.21201 -10.97900 -10.59419 -10.55351 -9.51814 -8.43214 -8.21054 -6.33842 0.19716 0.35672 0.61257 1.30815 1.39749 1.41472 1.52753 2.39899 2.66715 3.11691 3.48587 3.67625 3.89929 3.94126 4.02761 4.27308 4.40266 4.42754 4.58392 4.67935 4.72279 4.81576 4.85200 4.90664 4.95184 4.99863 5.19977 5.26024 5.26837 5.38953 5.47094 5.51901 5.81041 5.81533 5.96188 6.20236 6.82864 7.35853 8.90559 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.046561 B = 0.004319 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.215319 B = 6481.166443 C = 6670.237367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.039 4.039 3 H 0.145 0.855 4 C -0.079 4.079 5 C -0.121 4.121 6 C -0.090 4.090 7 C -0.127 4.127 8 C -0.065 4.065 9 C -0.064 4.064 10 C 0.038 3.962 11 C -0.545 4.545 12 H 0.064 0.936 13 C -0.001 4.001 14 N -0.934 5.934 15 Si 0.968 3.032 16 H -0.273 1.273 17 H -0.281 1.281 18 H -0.260 1.260 19 C -0.109 4.109 20 C -0.091 4.091 21 S -0.202 6.202 22 H 0.096 0.904 23 H 0.071 0.929 24 H 0.044 0.956 25 H 0.118 0.882 26 H 0.101 0.899 27 H 0.155 0.845 28 H 0.135 0.865 29 H 0.060 0.940 30 H 0.072 0.928 31 H -0.007 1.007 32 H -0.016 1.016 33 H 0.264 0.736 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.026 15.844 6.722 21.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 H 0.163 0.837 4 C -0.116 4.116 5 C -0.127 4.127 6 C -0.110 4.110 7 C -0.147 4.147 8 C -0.067 4.067 9 C -0.101 4.101 10 C 0.000 4.000 11 C -0.583 4.583 12 H 0.083 0.917 13 C -0.198 4.198 14 N -0.574 5.574 15 Si 0.792 3.208 16 H -0.199 1.199 17 H -0.207 1.207 18 H -0.184 1.184 19 C -0.133 4.133 20 C -0.203 4.203 21 S 0.039 5.961 22 H 0.115 0.885 23 H 0.090 0.910 24 H 0.063 0.937 25 H 0.136 0.864 26 H 0.119 0.881 27 H 0.173 0.827 28 H 0.153 0.847 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.011 0.989 32 H 0.002 0.998 33 H 0.073 0.927 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.615 16.325 5.483 21.347 hybrid contribution 0.560 -1.554 0.398 1.699 sum -12.055 14.771 5.881 19.952 Atomic orbital electron populations 1.21976 0.90992 1.02386 1.04163 1.24274 1.00107 1.01362 0.90943 0.83718 1.21036 1.04007 0.87801 0.98772 1.21230 1.02680 0.96901 0.91863 1.21067 0.98868 0.90453 1.00564 1.21132 1.00818 0.98142 0.94578 1.20130 0.96817 0.95452 0.94312 1.20555 0.97802 0.91394 1.00394 1.18902 0.91055 0.95098 0.94897 1.21707 0.92699 1.00147 1.43758 0.91741 1.26022 0.95750 1.02414 0.95651 1.70122 0.98752 1.38880 1.49692 0.85404 0.77913 0.78942 0.78536 1.19877 1.20664 1.18392 1.20340 1.02755 0.90603 0.99565 1.22045 1.05664 0.95942 0.96689 1.86138 1.81978 1.04420 1.23537 0.88509 0.91016 0.93652 0.86402 0.88051 0.82727 0.84689 0.92118 0.90898 0.98857 0.99797 0.92746 0.87164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.31 71.98 0.67 -1.21 16 2 C -0.04 -0.65 4.04 30.99 0.13 -0.53 16 3 H 0.15 1.68 8.14 -2.39 -0.02 1.66 16 4 C -0.08 -1.37 5.82 30.29 0.18 -1.20 16 5 C -0.12 -3.28 5.98 -19.33 -0.12 -3.39 16 6 C -0.09 -2.43 9.97 22.47 0.22 -2.20 16 7 C -0.13 -4.18 9.67 22.16 0.21 -3.96 16 8 C -0.07 -2.53 5.13 -19.90 -0.10 -2.63 16 9 C -0.06 -2.78 5.30 29.85 0.16 -2.62 16 10 C 0.04 2.07 4.96 29.85 0.15 2.22 16 11 C -0.55 -31.73 9.11 25.60 0.23 -31.50 16 12 H 0.06 3.55 7.74 -2.91 -0.02 3.53 16 13 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 14 N -0.93 -58.34 13.29 21.45 0.28 -58.05 16 15 Si 0.97 44.87 29.54 68.60 2.03 46.89 16 16 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 18 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 19 C -0.11 -4.17 9.73 22.36 0.22 -3.95 16 20 C -0.09 -3.01 6.48 22.57 0.15 -2.87 16 21 S -0.20 -5.61 22.56 -56.49 -1.27 -6.89 16 22 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 24 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.12 1.38 7.92 -2.38 -0.02 1.37 16 26 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 28 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 29 H 0.06 2.58 8.09 -2.38 -0.02 2.56 16 30 H 0.07 2.96 8.09 -2.39 -0.02 2.94 16 31 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 32 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 33 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 34 H 0.11 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -69.78 298.99 4.66 -65.12 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: 1.06 Total: 6.36 kcal Atomic # 6 Polarization: -55.99 SS G_CDS: 2.56 Total: -53.43 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: 0.28 Total: -58.05 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: -5.61 SS G_CDS: -1.27 Total: -6.89 kcal Total: -69.78 4.66 -65.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260085746.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.542 kcal (2) G-P(sol) polarization free energy of solvation -69.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds