Wall clock time and date at job start Mon Mar 30 2020 06:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99690 * 2 1 4 4 H 1.48504 * 109.47030 * 270.00333 * 3 2 1 5 5 H 1.48495 * 109.47264 * 30.00055 * 3 2 1 6 6 H 1.48498 * 109.47025 * 150.00315 * 3 2 1 7 7 C 1.37875 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99705 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00262 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47387 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47250 * 180.02562 * 10 9 7 12 12 C 1.38168 * 120.02281 * 264.97528 * 11 10 9 13 13 C 1.38251 * 120.05160 * 180.02562 * 12 11 10 14 14 C 1.38282 * 120.11212 * 0.02562 * 13 12 11 15 15 C 1.38127 * 120.05872 * 359.68061 * 14 13 12 16 16 C 1.38707 * 120.03291 * 84.99772 * 11 10 9 17 17 O 1.35910 * 120.05197 * 359.97438 * 16 11 10 18 18 C 1.42895 * 116.99675 * 174.23372 * 17 16 11 19 19 C 1.53367 * 114.56376 * 201.49877 * 18 17 16 20 20 O 1.43346 * 88.49694 * 220.44399 * 19 18 17 21 21 C 1.43343 * 88.32136 * 28.12786 * 20 19 18 22 22 H 0.96999 * 120.00159 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47097 * 60.00151 * 9 7 2 24 24 H 1.09004 * 109.47257 * 300.00233 * 9 7 2 25 25 H 1.08997 * 109.46809 * 59.99533 * 10 9 7 26 26 H 1.09004 * 109.46624 * 300.00022 * 10 9 7 27 27 H 1.07996 * 119.97735 * 0.04287 * 12 11 10 28 28 H 1.07996 * 119.94037 * 179.97438 * 13 12 11 29 29 H 1.08005 * 119.97628 * 179.97438 * 14 13 12 30 30 H 1.07997 * 120.03237 * 180.31502 * 15 14 13 31 31 H 1.08996 * 113.57131 * 335.77544 * 18 17 16 32 32 H 1.08999 * 113.39330 * 105.52117 * 19 18 17 33 33 H 1.08996 * 113.39684 * 335.36447 * 19 18 17 34 34 H 1.09003 * 113.39127 * 86.74971 * 21 20 19 35 35 H 1.09008 * 113.39452 * 216.90703 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4919 -4.9671 -0.0012 12 6 1.2366 -5.6186 1.1903 13 6 0.5459 -6.8162 1.1903 14 6 0.1093 -7.3653 -0.0013 15 6 0.3567 -6.7150 -1.1945 16 6 1.0545 -5.5157 -1.1977 17 8 1.3044 -4.8767 -2.3710 18 6 0.9378 -5.5587 -3.5719 19 6 1.6748 -5.0784 -4.8282 20 8 0.4409 -5.1911 -5.5492 21 6 -0.2517 -4.9413 -4.3193 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8720 -3.6042 0.8894 26 1 2.8720 -3.6042 -0.8906 27 1 1.5766 -5.1918 2.1222 28 1 0.3477 -7.3240 2.1226 29 1 -0.4297 -8.3012 0.0012 30 1 0.0112 -7.1417 -2.1245 31 1 0.8903 -6.6420 -3.4608 32 1 2.4418 -5.7724 -5.1720 33 1 2.0390 -4.0540 -4.7513 34 1 -0.3910 -3.8809 -4.1087 35 1 -1.1732 -5.5147 -4.2173 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260117416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:07 Heat of formation + Delta-G solvation = -29.161988 kcal Electronic energy + Delta-G solvation = -17755.062825 eV Core-core repulsion = 14912.681073 eV Total energy + Delta-G solvation = -2842.381751 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.05139 -39.44015 -36.79695 -34.06174 -32.10050 -30.04384 -29.33637 -28.30790 -26.34396 -24.97818 -22.89096 -21.96751 -20.63688 -19.97253 -18.23976 -16.62624 -16.40490 -16.15505 -15.80064 -15.33538 -14.59355 -14.47297 -14.18885 -14.06973 -12.92482 -12.65735 -12.59096 -12.37689 -12.27171 -12.02128 -11.69903 -11.36406 -11.10030 -10.87240 -10.70008 -10.50319 -10.33239 -9.87078 -9.74895 -9.58497 -9.04385 -8.43572 -8.30233 -7.73109 -5.95565 -3.97888 1.64248 1.74968 3.33263 3.34292 3.40286 3.43580 3.82093 3.95427 4.18580 4.49447 4.63380 5.05215 5.08921 5.14527 5.33194 5.34325 5.40018 5.41326 5.53777 5.64481 5.75243 5.84769 5.88032 6.00563 6.24982 6.32542 6.62863 6.73217 6.77203 6.92275 7.06625 7.20002 7.69694 7.74047 7.90587 8.05764 8.46385 9.09108 9.65473 11.15538 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.016616 B = 0.006989 C = 0.005310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.757962 B = 4005.498148 C = 5272.218867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.033 3.967 10 C -0.072 4.072 11 C -0.084 4.084 12 C -0.086 4.086 13 C -0.155 4.155 14 C -0.101 4.101 15 C -0.210 4.210 16 C 0.123 3.877 17 O -0.280 6.280 18 C 0.009 3.991 19 C 0.037 3.963 20 O -0.363 6.363 21 C 0.013 3.987 22 H 0.259 0.741 23 H 0.019 0.981 24 H 0.014 0.986 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.127 0.873 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.035 -14.489 -4.075 15.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.004 4.004 10 C -0.109 4.109 11 C -0.085 4.085 12 C -0.104 4.104 13 C -0.173 4.173 14 C -0.119 4.119 15 C -0.229 4.229 16 C 0.078 3.922 17 O -0.193 6.193 18 C -0.048 4.048 19 C -0.040 4.040 20 O -0.282 6.282 21 C -0.063 4.063 22 H 0.069 0.931 23 H 0.037 0.963 24 H 0.032 0.968 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.145 0.855 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.139 0.861 31 H 0.131 0.869 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.893 -14.222 -4.393 14.912 hybrid contribution 0.195 0.754 0.081 0.783 sum 1.088 -13.467 -4.313 14.183 Atomic orbital electron populations 1.69976 1.06026 1.26467 1.50974 1.25011 0.94822 0.99138 0.95435 0.86621 0.79858 0.83599 0.78080 1.20701 1.21268 1.19885 1.21257 0.93011 0.91015 1.50391 0.92687 1.19028 0.93650 0.90357 0.97352 1.20688 0.98298 0.90703 1.01211 1.19809 1.00494 0.98251 0.89952 1.20962 0.97784 0.94463 0.97210 1.20992 1.01511 0.97080 0.97748 1.20754 0.99714 0.99369 0.92059 1.21122 1.05475 0.97176 0.99126 1.18854 0.95960 0.91558 0.85820 1.86313 1.78379 1.43099 1.11535 1.25502 0.96685 0.98408 0.84254 1.23974 0.89471 1.03226 0.87326 1.89882 1.18965 1.92151 1.27168 1.24388 0.97049 1.02807 0.82102 0.93085 0.96264 0.96765 0.92414 0.91915 0.85462 0.86408 0.86471 0.86051 0.86868 0.88785 0.88527 0.88405 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.88 4.95 -27.88 -0.14 0.74 16 10 C -0.07 -1.54 5.01 -27.88 -0.14 -1.68 16 11 C -0.08 -1.59 5.15 -104.48 -0.54 -2.13 16 12 C -0.09 -1.42 9.68 -39.60 -0.38 -1.80 16 13 C -0.16 -2.18 10.04 -39.56 -0.40 -2.58 16 14 C -0.10 -1.35 10.04 -39.61 -0.40 -1.75 16 15 C -0.21 -3.05 9.03 -39.43 -0.36 -3.41 16 16 C 0.12 2.14 6.65 -39.22 -0.26 1.88 16 17 O -0.28 -4.88 9.35 -19.46 -0.18 -5.06 16 18 C 0.01 0.12 4.21 -26.31 -0.11 0.01 16 19 C 0.04 0.45 8.59 24.58 0.21 0.67 16 20 O -0.36 -5.06 12.74 -35.23 -0.45 -5.50 16 21 C 0.01 0.18 8.60 24.63 0.21 0.39 16 22 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 23 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 26 H 0.06 1.35 7.69 -51.93 -0.40 0.95 16 27 H 0.13 1.93 8.06 -52.49 -0.42 1.50 16 28 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 30 H 0.12 1.45 5.91 -52.49 -0.31 1.13 16 31 H 0.11 1.26 5.96 -51.93 -0.31 0.95 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 35 H 0.09 1.02 8.14 -51.92 -0.42 0.60 16 LS Contribution 299.44 15.07 4.51 4.51 Total: -1.00 -31.98 299.44 -7.90 -39.88 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -4.78 Total: -0.86 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -2.71 Total: -23.28 kcal Atomic # 7 Polarization: -27.26 SS G_CDS: 0.74 Total: -26.52 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -0.63 Total: -10.57 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.98 -7.90 -39.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260117416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.717 kcal (2) G-P(sol) polarization free energy of solvation -31.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds