Wall clock time and date at job start Mon Mar 30 2020 06:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99690 * 2 1 4 4 H 1.48504 * 109.47030 * 270.00333 * 3 2 1 5 5 H 1.48495 * 109.47264 * 30.00055 * 3 2 1 6 6 H 1.48498 * 109.47025 * 150.00315 * 3 2 1 7 7 C 1.37875 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99705 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00262 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47387 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47250 * 180.02562 * 10 9 7 12 12 C 1.38168 * 120.02281 * 264.97528 * 11 10 9 13 13 C 1.38251 * 120.05160 * 180.02562 * 12 11 10 14 14 C 1.38282 * 120.11212 * 0.02562 * 13 12 11 15 15 C 1.38127 * 120.05872 * 359.68061 * 14 13 12 16 16 C 1.38707 * 120.03291 * 84.99772 * 11 10 9 17 17 O 1.35910 * 120.05197 * 359.97438 * 16 11 10 18 18 C 1.42895 * 116.99675 * 174.23372 * 17 16 11 19 19 C 1.53367 * 114.56376 * 201.49877 * 18 17 16 20 20 O 1.43346 * 88.49694 * 220.44399 * 19 18 17 21 21 C 1.43343 * 88.32136 * 28.12786 * 20 19 18 22 22 H 0.96999 * 120.00159 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47097 * 60.00151 * 9 7 2 24 24 H 1.09004 * 109.47257 * 300.00233 * 9 7 2 25 25 H 1.08997 * 109.46809 * 59.99533 * 10 9 7 26 26 H 1.09004 * 109.46624 * 300.00022 * 10 9 7 27 27 H 1.07996 * 119.97735 * 0.04287 * 12 11 10 28 28 H 1.07996 * 119.94037 * 179.97438 * 13 12 11 29 29 H 1.08005 * 119.97628 * 179.97438 * 14 13 12 30 30 H 1.07997 * 120.03237 * 180.31502 * 15 14 13 31 31 H 1.08996 * 113.57131 * 335.77544 * 18 17 16 32 32 H 1.08999 * 113.39330 * 105.52117 * 19 18 17 33 33 H 1.08996 * 113.39684 * 335.36447 * 19 18 17 34 34 H 1.09003 * 113.39127 * 86.74971 * 21 20 19 35 35 H 1.09008 * 113.39452 * 216.90703 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4919 -4.9671 -0.0012 12 6 1.2366 -5.6186 1.1903 13 6 0.5459 -6.8162 1.1903 14 6 0.1093 -7.3653 -0.0013 15 6 0.3567 -6.7150 -1.1945 16 6 1.0545 -5.5157 -1.1977 17 8 1.3044 -4.8767 -2.3710 18 6 0.9378 -5.5587 -3.5719 19 6 1.6748 -5.0784 -4.8282 20 8 0.4409 -5.1911 -5.5492 21 6 -0.2517 -4.9413 -4.3193 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8720 -3.6042 0.8894 26 1 2.8720 -3.6042 -0.8906 27 1 1.5766 -5.1918 2.1222 28 1 0.3477 -7.3240 2.1226 29 1 -0.4297 -8.3012 0.0012 30 1 0.0112 -7.1417 -2.1245 31 1 0.8903 -6.6420 -3.4608 32 1 2.4418 -5.7724 -5.1720 33 1 2.0390 -4.0540 -4.7513 34 1 -0.3910 -3.8809 -4.1087 35 1 -1.1732 -5.5147 -4.2173 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260117416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:07 Heat of formation + Delta-G solvation = -49.003828 kcal Electronic energy + Delta-G solvation = -17755.923231 eV Core-core repulsion = 14912.681073 eV Total energy + Delta-G solvation = -2843.242158 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.14222 -40.62789 -38.00354 -35.95423 -33.97299 -31.19343 -30.84023 -29.64910 -27.36945 -26.86520 -24.09698 -23.63035 -21.98740 -21.30748 -19.41298 -18.53842 -17.67356 -17.34695 -16.89972 -16.59276 -16.51273 -15.80524 -15.42208 -15.22174 -14.56935 -14.42577 -14.06886 -13.75478 -13.47704 -13.34907 -13.03491 -12.86465 -12.83936 -12.50617 -12.35935 -11.92178 -11.66132 -11.57267 -11.44709 -11.11979 -10.90587 -10.55541 -9.68566 -9.00104 -8.19258 -6.31272 0.45164 0.55274 1.38681 1.40551 1.51736 2.21172 2.40565 2.80193 2.82483 3.07829 3.12994 3.64254 3.94197 3.97863 4.12640 4.25642 4.28297 4.36433 4.46086 4.46919 4.66905 4.70668 4.76400 4.80165 4.85322 4.92343 5.04643 5.28423 5.40849 5.48698 5.53078 5.64101 5.81891 5.85466 5.97880 6.24078 6.52715 6.85245 7.37583 8.92218 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.016616 B = 0.006989 C = 0.005310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.757962 B = 4005.498148 C = 5272.218867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.045 3.955 10 C -0.055 4.055 11 C -0.126 4.126 12 C -0.097 4.097 13 C -0.154 4.154 14 C -0.089 4.089 15 C -0.209 4.209 16 C 0.105 3.895 17 O -0.311 6.311 18 C 0.007 3.993 19 C 0.036 3.964 20 O -0.372 6.372 21 C 0.011 3.989 22 H 0.263 0.737 23 H -0.015 1.015 24 H -0.014 1.014 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.130 0.870 28 H 0.150 0.850 29 H 0.159 0.841 30 H 0.151 0.849 31 H 0.142 0.858 32 H 0.125 0.875 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.241 -16.271 -4.054 16.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.078 0.922 9 C 0.008 3.992 10 C -0.092 4.092 11 C -0.127 4.127 12 C -0.115 4.115 13 C -0.172 4.172 14 C -0.107 4.107 15 C -0.227 4.227 16 C 0.061 3.939 17 O -0.225 6.225 18 C -0.050 4.050 19 C -0.040 4.040 20 O -0.291 6.291 21 C -0.066 4.066 22 H 0.072 0.928 23 H 0.004 0.996 24 H 0.005 0.995 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.148 0.852 28 H 0.168 0.832 29 H 0.176 0.824 30 H 0.168 0.832 31 H 0.160 0.840 32 H 0.143 0.857 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.111 -16.017 -4.374 16.641 hybrid contribution 0.071 1.232 0.062 1.235 sum 1.182 -14.786 -4.312 15.447 Atomic orbital electron populations 1.70118 1.07850 1.27691 1.51686 1.25991 0.95766 1.03340 0.94676 0.85448 0.78756 0.78359 0.78501 1.19849 1.20563 1.18550 1.21699 0.93515 0.92322 1.50541 0.92194 1.18808 0.93849 0.92292 0.94225 1.20331 0.97181 0.90889 1.00828 1.19705 1.03053 0.97945 0.91989 1.21140 0.98291 0.95577 0.96469 1.21372 1.00144 0.95954 0.99688 1.21288 0.98122 1.00215 0.91092 1.21465 1.04317 0.95864 1.01081 1.19073 0.96726 0.92745 0.85364 1.86273 1.78851 1.44713 1.12657 1.25764 0.96626 0.99621 0.82947 1.24056 0.89739 1.03299 0.86947 1.89869 1.19681 1.92041 1.27556 1.24378 0.98314 1.01863 0.82072 0.92822 0.99631 0.99549 0.92024 0.92847 0.85192 0.83180 0.82389 0.83180 0.84028 0.85719 0.89994 0.90890 0.86792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.57 13.29 21.45 0.28 -58.28 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 45.39 29.54 68.60 2.03 47.42 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.54 -32.21 9.11 25.60 0.23 -31.98 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.05 2.55 4.95 29.85 0.15 2.69 16 10 C -0.05 -2.48 5.01 29.85 0.15 -2.33 16 11 C -0.13 -4.87 5.15 -19.77 -0.10 -4.97 16 12 C -0.10 -3.14 9.68 22.26 0.22 -2.93 16 13 C -0.15 -3.88 10.04 22.28 0.22 -3.66 16 14 C -0.09 -2.05 10.04 22.25 0.22 -1.82 16 15 C -0.21 -5.50 9.03 22.37 0.20 -5.30 16 16 C 0.11 3.67 6.65 22.50 0.15 3.82 16 17 O -0.31 -11.08 9.35 -92.53 -0.87 -11.95 16 18 C 0.01 0.18 4.21 30.87 0.13 0.31 16 19 C 0.04 0.87 8.59 63.83 0.55 1.42 16 20 O -0.37 -10.08 12.74 -148.98 -1.90 -11.98 16 21 C 0.01 0.28 8.60 63.86 0.55 0.83 16 22 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 23 H -0.01 -0.91 8.14 -2.38 -0.02 -0.93 16 24 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 25 H 0.06 2.63 8.05 -2.39 -0.02 2.61 16 26 H 0.05 2.43 7.69 -2.38 -0.02 2.41 16 27 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 28 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 29 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 30 H 0.15 2.98 5.91 -2.91 -0.02 2.96 16 31 H 0.14 2.76 5.96 -2.39 -0.01 2.74 16 32 H 0.12 2.20 8.14 -2.39 -0.02 2.19 16 33 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.11 2.40 8.14 -2.38 -0.02 2.38 16 Total: -1.00 -71.78 299.44 3.75 -68.03 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 1.07 Total: 10.23 kcal Atomic # 6 Polarization: -46.60 SS G_CDS: 3.13 Total: -43.47 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: 0.28 Total: -58.28 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -2.76 Total: -23.92 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -71.78 3.75 -68.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260117416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.025 kcal (2) G-P(sol) polarization free energy of solvation -71.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds