Wall clock time and date at job start Mon Mar 30 2020 05:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34444 * 124.91743 * 2 1 4 4 C 1.34883 * 110.88421 * 179.97438 * 3 2 1 5 5 C 1.38915 * 133.37729 * 179.97438 * 4 3 2 6 6 C 1.37814 * 119.99575 * 180.02562 * 5 4 3 7 7 C 1.38959 * 120.66163 * 0.02562 * 6 5 4 8 8 F 1.35102 * 119.88475 * 180.02562 * 7 6 5 9 9 C 1.37913 * 120.22460 * 359.92060 * 7 6 5 10 10 C 1.39438 * 119.57754 * 0.11062 * 9 7 6 11 11 C 1.33992 * 124.92980 * 179.97438 * 2 1 3 12 12 C 1.50702 * 126.90243 * 359.97438 * 11 2 1 13 13 C 1.53006 * 109.47069 * 90.02464 * 12 11 2 14 14 C 1.50702 * 109.47069 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00029 * 359.97438 * 14 13 12 16 16 C 1.37869 * 119.99829 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00311 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00113 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46818 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47301 * 119.99717 * 18 16 14 21 21 H 1.48500 * 109.47457 * 240.00049 * 18 16 14 22 22 H 1.08996 * 109.47699 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47200 * 120.02978 * 1 2 3 24 24 H 1.09009 * 109.46878 * 240.02359 * 1 2 3 25 25 H 1.08001 * 120.00256 * 0.06711 * 5 4 3 26 26 H 1.07996 * 119.66958 * 180.02562 * 6 5 4 27 27 H 1.07993 * 120.20958 * 180.02562 * 9 7 6 28 28 H 1.09002 * 109.47316 * 210.01738 * 12 11 2 29 29 H 1.08992 * 109.47546 * 330.02410 * 12 11 2 30 30 H 1.09007 * 109.46899 * 299.99958 * 13 12 11 31 31 H 1.08996 * 109.47420 * 59.99444 * 13 12 11 32 32 H 0.97000 * 119.99781 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2766 1.1024 0.0000 4 6 3.5851 0.7753 0.0006 5 6 4.7556 1.5236 0.0003 6 6 5.9789 0.8890 0.0006 7 6 6.0577 -0.4983 0.0005 8 9 7.2653 -1.1041 0.0012 9 6 4.9072 -1.2590 0.0018 10 6 3.6643 -0.6270 0.0009 11 6 2.2742 -1.0985 0.0005 12 6 1.8043 -2.5304 0.0017 13 6 1.6454 -3.0162 -1.4405 14 6 1.1749 -4.4479 -1.4393 15 1 1.0065 -4.9602 -0.5036 16 6 0.9594 -5.1037 -2.6328 17 7 1.1639 -4.4797 -3.7723 18 14 0.3769 -6.8785 -2.6314 19 1 0.2226 -7.3477 -1.2309 20 1 -0.9299 -6.9712 -3.3308 21 1 1.3742 -7.7275 -3.3313 22 1 -0.3634 1.0276 -0.0005 23 1 -0.3634 -0.5143 -0.8897 24 1 -0.3633 -0.5135 0.8903 25 1 4.7068 2.6025 0.0007 26 1 6.8855 1.4759 0.0008 27 1 4.9687 -2.3371 0.0021 28 1 2.5367 -3.1528 0.5159 29 1 0.8455 -2.5978 0.5155 30 1 0.9130 -2.3939 -1.9549 31 1 2.6042 -2.9489 -1.9544 32 1 1.0119 -4.9410 -4.6119 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260137552.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:58 Heat of formation + Delta-G solvation = -39.379273 kcal Electronic energy + Delta-G solvation = -17205.512809 eV Core-core repulsion = 14239.227698 eV Total energy + Delta-G solvation = -2966.285111 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.73263 -42.23725 -37.46943 -34.95185 -32.79074 -31.06123 -30.49657 -29.50492 -26.91075 -24.97044 -22.81933 -21.91206 -21.37375 -19.39693 -17.63325 -16.95829 -16.32909 -16.02781 -15.87193 -15.32090 -14.75943 -14.47635 -14.15242 -13.62962 -13.18285 -12.91596 -12.70239 -12.45286 -12.37172 -12.15485 -11.83530 -11.63859 -11.18120 -11.00585 -10.78148 -10.60508 -10.00546 -9.84750 -9.35186 -9.11877 -8.37898 -8.28914 -7.71746 -6.02326 -4.05783 0.94667 1.28949 2.61259 2.89541 3.29464 3.37281 3.40952 3.67276 4.25326 4.43785 4.59235 4.77432 5.06606 5.22959 5.31867 5.33418 5.37243 5.61010 5.71917 5.84531 5.93649 6.04091 6.08243 6.15767 6.39101 6.50981 6.56102 6.71214 6.80106 7.04963 7.39631 7.65271 7.77623 7.97335 8.37091 9.01573 9.58743 11.08675 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.022243 B = 0.006048 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.532273 B = 4628.694105 C = 5560.045712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.019 3.981 3 O -0.194 6.194 4 C 0.039 3.961 5 C -0.081 4.081 6 C -0.134 4.134 7 C 0.074 3.926 8 F -0.141 7.141 9 C -0.097 4.097 10 C -0.091 4.091 11 C -0.147 4.147 12 C -0.047 4.047 13 C 0.030 3.970 14 C -0.522 4.522 15 H 0.057 0.943 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.891 3.109 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.072 0.928 23 H 0.095 0.905 24 H 0.087 0.913 25 H 0.138 0.862 26 H 0.143 0.857 27 H 0.143 0.857 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.017 0.983 31 H 0.016 0.984 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.484 11.454 8.315 14.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.028 4.028 3 O -0.097 6.097 4 C -0.008 4.008 5 C -0.100 4.100 6 C -0.153 4.153 7 C 0.055 3.945 8 F -0.119 7.119 9 C -0.116 4.116 10 C -0.092 4.092 11 C -0.148 4.148 12 C -0.085 4.085 13 C -0.007 4.007 14 C -0.560 4.560 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.091 0.909 23 H 0.114 0.886 24 H 0.106 0.894 25 H 0.156 0.844 26 H 0.161 0.839 27 H 0.160 0.840 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.415 11.670 8.127 14.891 hybrid contribution 0.065 -1.201 -0.250 1.229 sum 4.480 10.469 7.877 13.847 Atomic orbital electron populations 1.20403 0.84591 1.03445 1.04569 1.22138 0.93901 0.82890 1.03827 1.83926 1.14452 1.34275 1.77038 1.19554 0.83753 0.93406 1.04136 1.19600 0.87305 0.99657 1.03429 1.20744 0.97943 0.92553 1.04079 1.17329 0.80240 0.90744 1.06200 1.91485 1.42407 1.83722 1.94322 1.20520 0.89356 1.01120 1.00610 1.19653 0.93788 0.92623 1.03142 1.21365 0.89431 0.97735 1.06257 1.20262 0.99620 0.86813 1.01762 1.19057 0.97307 0.95574 0.88765 1.21270 1.44998 0.97381 0.92382 0.92494 1.25021 0.95582 0.98119 0.95648 1.69984 1.49167 1.36851 0.97272 0.86548 0.78389 0.85033 0.78109 1.19690 1.20996 1.21007 0.90906 0.88638 0.89443 0.84436 0.83947 0.83952 0.92103 0.91792 0.96484 0.96524 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.98 9.86 36.01 0.35 -0.62 16 2 C 0.02 0.32 7.23 -35.80 -0.26 0.06 16 3 O -0.19 -3.26 10.58 3.71 0.04 -3.22 16 4 C 0.04 0.64 7.41 -38.50 -0.29 0.36 16 5 C -0.08 -1.06 10.06 -39.49 -0.40 -1.46 16 6 C -0.13 -1.69 9.99 -39.47 -0.39 -2.09 16 7 C 0.07 1.11 7.29 -39.43 -0.29 0.83 16 8 F -0.14 -2.11 17.26 2.25 0.04 -2.07 16 9 C -0.10 -1.64 10.07 -39.25 -0.40 -2.04 16 10 C -0.09 -1.65 6.38 -105.16 -0.67 -2.32 16 11 C -0.15 -2.77 5.60 -102.66 -0.58 -3.35 16 12 C -0.05 -0.97 5.46 -27.88 -0.15 -1.12 16 13 C 0.03 0.77 4.96 -27.88 -0.14 0.63 16 14 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 18 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 24 H 0.09 1.02 8.14 -51.92 -0.42 0.59 16 25 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 26 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 27 H 0.14 2.38 8.06 -52.49 -0.42 1.95 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.22 7.85 -51.93 -0.41 0.81 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 287.80 15.07 4.34 4.34 Total: -1.00 -30.94 287.80 -7.23 -38.18 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -3.75 Total: -3.20 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: -3.61 Total: -24.39 kcal Atomic # 7 Polarization: -26.76 SS G_CDS: 0.74 Total: -26.02 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: 0.04 Total: -3.22 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.94 -7.23 -38.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260137552.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.200 kcal (2) G-P(sol) polarization free energy of solvation -30.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds