Wall clock time and date at job start Mon Mar 30 2020 05:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34444 * 124.91743 * 2 1 4 4 C 1.34883 * 110.88421 * 179.97438 * 3 2 1 5 5 C 1.38915 * 133.37729 * 179.97438 * 4 3 2 6 6 C 1.37814 * 119.99575 * 180.02562 * 5 4 3 7 7 C 1.38959 * 120.66163 * 0.02562 * 6 5 4 8 8 F 1.35102 * 119.88475 * 180.02562 * 7 6 5 9 9 C 1.37913 * 120.22460 * 359.92060 * 7 6 5 10 10 C 1.39438 * 119.57754 * 0.11062 * 9 7 6 11 11 C 1.33992 * 124.92980 * 179.97438 * 2 1 3 12 12 C 1.50702 * 126.90243 * 359.97438 * 11 2 1 13 13 C 1.53006 * 109.47069 * 90.02464 * 12 11 2 14 14 C 1.50702 * 109.47069 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00029 * 359.97438 * 14 13 12 16 16 C 1.37869 * 119.99829 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00311 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00113 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46818 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47301 * 119.99717 * 18 16 14 21 21 H 1.48500 * 109.47457 * 240.00049 * 18 16 14 22 22 H 1.08996 * 109.47699 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47200 * 120.02978 * 1 2 3 24 24 H 1.09009 * 109.46878 * 240.02359 * 1 2 3 25 25 H 1.08001 * 120.00256 * 0.06711 * 5 4 3 26 26 H 1.07996 * 119.66958 * 180.02562 * 6 5 4 27 27 H 1.07993 * 120.20958 * 180.02562 * 9 7 6 28 28 H 1.09002 * 109.47316 * 210.01738 * 12 11 2 29 29 H 1.08992 * 109.47546 * 330.02410 * 12 11 2 30 30 H 1.09007 * 109.46899 * 299.99958 * 13 12 11 31 31 H 1.08996 * 109.47420 * 59.99444 * 13 12 11 32 32 H 0.97000 * 119.99781 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2766 1.1024 0.0000 4 6 3.5851 0.7753 0.0006 5 6 4.7556 1.5236 0.0003 6 6 5.9789 0.8890 0.0006 7 6 6.0577 -0.4983 0.0005 8 9 7.2653 -1.1041 0.0012 9 6 4.9072 -1.2590 0.0018 10 6 3.6643 -0.6270 0.0009 11 6 2.2742 -1.0985 0.0005 12 6 1.8043 -2.5304 0.0017 13 6 1.6454 -3.0162 -1.4405 14 6 1.1749 -4.4479 -1.4393 15 1 1.0065 -4.9602 -0.5036 16 6 0.9594 -5.1037 -2.6328 17 7 1.1639 -4.4797 -3.7723 18 14 0.3769 -6.8785 -2.6314 19 1 0.2226 -7.3477 -1.2309 20 1 -0.9299 -6.9712 -3.3308 21 1 1.3742 -7.7275 -3.3313 22 1 -0.3634 1.0276 -0.0005 23 1 -0.3634 -0.5143 -0.8897 24 1 -0.3633 -0.5135 0.8903 25 1 4.7068 2.6025 0.0007 26 1 6.8855 1.4759 0.0008 27 1 4.9687 -2.3371 0.0021 28 1 2.5367 -3.1528 0.5159 29 1 0.8455 -2.5978 0.5155 30 1 0.9130 -2.3939 -1.9549 31 1 2.6042 -2.9489 -1.9544 32 1 1.0119 -4.9410 -4.6119 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260137552.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:58 Heat of formation + Delta-G solvation = -55.803032 kcal Electronic energy + Delta-G solvation = -17206.224997 eV Core-core repulsion = 14239.227698 eV Total energy + Delta-G solvation = -2966.997299 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.93793 -43.50626 -38.64456 -36.61721 -34.70438 -32.21506 -32.09486 -30.90052 -28.29548 -26.77483 -24.02118 -23.54039 -22.83851 -20.80445 -18.85828 -18.63993 -17.97903 -17.35811 -17.13548 -16.55106 -16.47855 -16.01615 -15.42092 -14.96822 -14.60850 -14.36175 -13.98493 -13.90869 -13.75898 -13.65085 -13.29948 -12.95558 -12.84937 -12.75254 -12.45601 -12.11750 -11.81300 -11.62296 -11.23816 -10.79405 -10.57320 -9.50254 -9.04822 -8.20438 -6.32739 -0.23547 0.07988 1.28724 1.40221 1.40879 1.54163 1.67438 2.40371 2.46486 3.05804 3.12672 3.44762 3.57819 3.87629 4.04683 4.13223 4.25093 4.39605 4.58999 4.66065 4.74324 4.81017 4.86681 4.93290 5.00149 5.06233 5.07860 5.20618 5.43563 5.51187 5.61044 5.70423 5.82535 6.12607 6.21291 6.84346 7.37112 8.91339 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.022243 B = 0.006048 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.532273 B = 4628.694105 C = 5560.045712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.032 3.968 3 O -0.193 6.193 4 C 0.022 3.978 5 C -0.065 4.065 6 C -0.120 4.120 7 C 0.074 3.926 8 F -0.142 7.142 9 C -0.128 4.128 10 C -0.119 4.119 11 C -0.190 4.190 12 C -0.029 4.029 13 C 0.040 3.960 14 C -0.541 4.541 15 H 0.065 0.935 16 C 0.000 4.000 17 N -0.934 5.934 18 Si 0.966 3.034 19 H -0.259 1.259 20 H -0.276 1.276 21 H -0.281 1.281 22 H 0.101 0.899 23 H 0.083 0.917 24 H 0.106 0.894 25 H 0.180 0.820 26 H 0.186 0.814 27 H 0.127 0.873 28 H 0.055 0.945 29 H 0.078 0.922 30 H -0.005 1.005 31 H -0.022 1.022 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.569 12.704 9.289 16.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.016 4.016 3 O -0.095 6.095 4 C -0.025 4.025 5 C -0.083 4.083 6 C -0.138 4.138 7 C 0.055 3.945 8 F -0.120 7.120 9 C -0.147 4.147 10 C -0.120 4.120 11 C -0.191 4.191 12 C -0.067 4.067 13 C 0.003 3.997 14 C -0.578 4.578 15 H 0.083 0.917 16 C -0.198 4.198 17 N -0.575 5.575 18 Si 0.790 3.210 19 H -0.183 1.183 20 H -0.202 1.202 21 H -0.207 1.207 22 H 0.120 0.880 23 H 0.102 0.898 24 H 0.125 0.875 25 H 0.198 0.802 26 H 0.203 0.797 27 H 0.145 0.855 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.014 0.986 31 H -0.003 1.003 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.507 12.926 9.120 16.449 hybrid contribution 0.118 -1.514 -0.560 1.619 sum 4.625 11.412 8.559 14.996 Atomic orbital electron populations 1.20566 0.82185 1.05472 1.04818 1.22677 0.95243 0.82427 1.01207 1.83928 1.14735 1.33920 1.76931 1.20037 0.84441 0.93031 1.05008 1.20147 0.85828 1.01553 1.00809 1.21209 0.99511 0.91353 1.01732 1.17542 0.79467 0.91894 1.05591 1.91482 1.42252 1.84028 1.94262 1.20531 0.90275 1.00829 1.03069 1.19833 0.93672 0.94028 1.04430 1.21280 0.90812 0.97267 1.09771 1.19905 1.00301 0.88254 0.98205 1.18866 0.94359 0.94905 0.91584 1.21706 1.44797 0.98476 0.92861 0.91727 1.25991 0.95585 1.03039 0.95162 1.70125 1.50314 1.38984 0.98045 0.85386 0.77906 0.78956 0.78726 1.18311 1.20159 1.20724 0.88035 0.89847 0.87521 0.80225 0.79664 0.85521 0.92633 0.90347 0.98621 1.00333 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.89 9.86 71.24 0.70 -1.19 16 2 C 0.03 1.06 7.23 24.72 0.18 1.24 16 3 O -0.19 -6.22 10.58 -9.65 -0.10 -6.33 16 4 C 0.02 0.70 7.41 22.97 0.17 0.87 16 5 C -0.07 -1.49 10.06 22.33 0.22 -1.27 16 6 C -0.12 -2.63 9.99 22.34 0.22 -2.41 16 7 C 0.07 2.17 7.29 22.37 0.16 2.34 16 8 F -0.14 -4.13 17.26 44.97 0.78 -3.36 16 9 C -0.13 -4.51 10.07 22.48 0.23 -4.29 16 10 C -0.12 -4.40 6.38 -20.21 -0.13 -4.53 16 11 C -0.19 -7.41 5.60 -18.59 -0.10 -7.52 16 12 C -0.03 -1.25 5.46 29.85 0.16 -1.09 16 13 C 0.04 2.15 4.96 29.85 0.15 2.30 16 14 C -0.54 -30.78 9.11 25.60 0.23 -30.55 16 15 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 16 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 17 N -0.93 -57.55 13.29 21.44 0.28 -57.27 16 18 Si 0.97 44.26 29.54 68.60 2.03 46.29 16 19 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 20 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 24 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 25 H 0.18 2.59 8.06 -2.91 -0.02 2.56 16 26 H 0.19 2.50 8.06 -2.91 -0.02 2.47 16 27 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 28 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.08 3.04 7.85 -2.39 -0.02 3.02 16 30 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 31 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 32 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -69.28 287.80 6.77 -62.51 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: 1.12 Total: 3.80 kcal Atomic # 6 Polarization: -48.30 SS G_CDS: 2.66 Total: -45.64 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.28 Total: -57.27 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.10 Total: -6.33 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.78 Total: -3.36 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -69.28 6.77 -62.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260137552.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.705 kcal (2) G-P(sol) polarization free energy of solvation -69.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds