Wall clock time and date at job start Mon Mar 30 2020 06:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35978 * 116.99973 * 2 1 4 4 C 1.39182 * 119.89525 * 0.02562 * 3 2 1 5 5 C 1.37752 * 120.52723 * 180.02562 * 4 3 2 6 6 C 1.38962 * 120.01800 * 359.97438 * 5 4 3 7 7 O 1.34991 * 133.16490 * 180.02562 * 6 5 4 8 8 N 1.41335 * 109.47720 * 179.97438 * 7 6 5 9 9 C 1.30417 * 109.62381 * 0.02562 * 8 7 6 10 10 N 1.38788 * 126.37515 * 179.97438 * 9 8 7 11 11 C 1.46506 * 119.99834 * 0.02562 * 10 9 8 12 12 C 1.50698 * 109.46591 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00609 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99714 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00219 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00161 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47310 * 89.99971 * 16 14 12 18 18 H 1.48503 * 109.47116 * 210.00220 * 16 14 12 19 19 H 1.48508 * 109.46921 * 329.99815 * 16 14 12 20 20 C 1.40265 * 119.61064 * 359.97438 * 6 5 4 21 21 C 1.38120 * 119.89080 * 180.02562 * 3 2 1 22 22 H 1.08995 * 109.47309 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.46713 * 299.99833 * 1 2 3 24 24 H 1.08998 * 109.47319 * 59.98785 * 1 2 3 25 25 H 1.08005 * 119.73369 * 0.02562 * 4 3 2 26 26 H 1.08001 * 119.99135 * 179.97438 * 5 4 3 27 27 H 0.96996 * 119.99722 * 180.02562 * 10 9 8 28 28 H 1.08994 * 109.47173 * 299.99629 * 11 10 9 29 29 H 1.09000 * 109.46703 * 60.00474 * 11 10 9 30 30 H 0.96994 * 120.00141 * 179.97438 * 15 14 12 31 31 H 1.08005 * 120.17566 * 359.96169 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2862 2.3775 0.0005 5 6 1.8980 3.6117 0.0000 6 6 3.2848 3.7001 -0.0005 7 8 4.1437 4.7415 -0.0007 8 7 5.4715 4.2573 -0.0007 9 6 5.4621 2.9531 -0.0011 10 7 6.5736 2.1220 -0.0018 11 6 7.9200 2.6994 -0.0015 12 6 8.9416 1.5916 -0.0030 13 1 8.6202 0.5605 -0.0037 14 6 10.2867 1.8942 -0.0025 15 7 11.1783 0.9275 -0.0033 16 14 10.8428 3.6775 0.0008 17 1 10.9902 4.1475 1.4017 18 1 12.1477 3.7904 -0.6991 19 1 9.8326 4.5123 -0.6977 20 6 4.0541 2.5273 0.0000 21 6 3.4258 1.2812 -0.0005 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5140 -0.8898 25 1 0.2080 2.3139 0.0014 26 1 1.2997 4.5108 0.0000 27 1 6.4589 1.1588 -0.0025 28 1 8.0514 3.3154 -0.8911 29 1 8.0514 3.3142 0.8890 30 1 12.1246 1.1404 -0.0033 31 1 4.0151 0.3761 -0.0003 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260147877.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:25 Heat of formation + Delta-G solvation = 30.870588 kcal Electronic energy + Delta-G solvation = -17003.255160 eV Core-core repulsion = 14059.936273 eV Total energy + Delta-G solvation = -2943.318887 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.35140 -39.55350 -36.33310 -36.05677 -33.03418 -31.67600 -30.37286 -29.39854 -27.57555 -27.26421 -23.41684 -22.57073 -21.83707 -20.40200 -18.50510 -17.65876 -16.78441 -16.55087 -16.00253 -15.68077 -15.43926 -14.75974 -14.62628 -13.99432 -13.68744 -13.38122 -13.35035 -12.94596 -12.48098 -12.47302 -12.20072 -11.37891 -11.12527 -10.96514 -10.94757 -10.70611 -10.63468 -10.00927 -9.57836 -9.10022 -8.76864 -8.21685 -7.49045 -6.26608 -4.30204 0.73174 1.33407 2.69227 2.86960 3.11385 3.23815 3.30991 3.37604 3.59818 3.73371 4.28444 4.51823 4.54848 4.77378 4.81294 4.90287 5.02158 5.08197 5.21291 5.30831 5.46309 5.79674 5.92780 6.04980 6.14461 6.33502 6.60671 6.93388 7.17466 7.23696 7.43399 7.75376 8.28807 8.35394 8.72399 9.31496 10.85157 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.035427 B = 0.004939 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.177317 B = 5668.323594 C = 6438.053637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.084 3.916 4 C -0.146 4.146 5 C -0.099 4.099 6 C 0.070 3.930 7 O -0.106 6.106 8 N -0.364 5.364 9 C 0.375 3.625 10 N -0.666 5.666 11 C 0.226 3.774 12 C -0.546 4.546 13 H 0.082 0.918 14 C 0.080 3.920 15 N -0.889 5.889 16 Si 0.876 3.124 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.260 1.260 20 C -0.162 4.162 21 C -0.070 4.070 22 H 0.099 0.901 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.140 0.860 26 H 0.139 0.861 27 H 0.413 0.587 28 H 0.027 0.973 29 H 0.022 0.978 30 H 0.269 0.731 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.444 0.362 -0.018 21.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.039 3.961 4 C -0.166 4.166 5 C -0.119 4.119 6 C 0.015 3.985 7 O -0.109 6.109 8 N -0.135 5.135 9 C 0.103 3.897 10 N -0.305 5.305 11 C 0.104 3.896 12 C -0.584 4.584 13 H 0.100 0.900 14 C -0.124 4.124 15 N -0.526 5.526 16 Si 0.702 3.298 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.184 1.184 20 C -0.167 4.167 21 C -0.091 4.091 22 H 0.117 0.883 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.158 0.842 26 H 0.157 0.843 27 H 0.250 0.750 28 H 0.045 0.955 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -20.382 1.383 -0.019 20.428 hybrid contribution -0.224 -0.126 0.024 0.258 sum -20.606 1.257 0.004 20.644 Atomic orbital electron populations 1.23044 0.78552 1.03945 1.01198 1.86094 1.21122 1.26214 1.89540 1.18505 0.91578 0.84411 1.01597 1.21104 1.00141 0.91172 1.04190 1.19706 0.89350 0.98264 1.04544 1.20078 0.92639 0.87777 0.97958 1.89150 1.12291 1.26581 1.82850 1.80434 0.89324 1.07350 1.36429 1.21303 0.86809 0.90581 0.91042 1.44444 1.02523 1.07118 1.76422 1.19672 0.77517 0.95567 0.96850 1.20993 0.90015 0.93529 1.53873 0.90022 1.24759 0.96195 0.97725 0.93724 1.69869 1.01656 1.32120 1.48949 0.86834 0.78797 0.85028 0.79157 1.19715 1.20743 1.18433 1.20279 0.90860 0.94401 1.11124 1.19759 0.91546 0.96765 1.01024 0.88264 0.92715 0.92719 0.84249 0.84316 0.75017 0.95526 0.95993 0.92115 0.84211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.52 10.49 -19.67 -0.21 -3.72 16 3 C 0.08 1.03 6.68 -39.27 -0.26 0.77 16 4 C -0.15 -1.54 9.01 -39.41 -0.36 -1.89 16 5 C -0.10 -1.19 10.06 -39.49 -0.40 -1.59 16 6 C 0.07 1.13 7.47 -38.55 -0.29 0.84 16 7 O -0.11 -2.03 12.06 7.20 0.09 -1.95 16 8 N -0.36 -7.80 12.49 32.52 0.41 -7.40 16 9 C 0.38 7.46 8.15 -153.63 -1.25 6.20 16 10 N -0.67 -13.70 5.71 -59.73 -0.34 -14.04 16 11 C 0.23 5.44 4.84 -5.19 -0.03 5.41 16 12 C -0.55 -14.80 9.83 -34.44 -0.34 -15.14 16 13 H 0.08 2.31 7.84 -52.49 -0.41 1.89 16 14 C 0.08 2.24 5.47 -17.82 -0.10 2.15 16 15 N -0.89 -26.15 13.96 55.43 0.77 -25.38 16 16 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 20 C -0.16 -2.72 6.35 -105.05 -0.67 -3.39 16 21 C -0.07 -1.00 10.03 -39.14 -0.39 -1.39 16 22 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.29 7.65 -51.93 -0.40 -0.10 16 24 H 0.05 0.29 7.65 -51.93 -0.40 -0.10 16 25 H 0.14 0.97 6.26 -52.48 -0.33 0.64 16 26 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 27 H 0.41 7.61 8.45 -40.82 -0.34 7.27 16 28 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 29 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 30 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.14 1.81 8.06 -52.48 -0.42 1.39 16 LS Contribution 275.83 15.07 4.16 4.16 Total: -1.00 -31.54 275.83 -5.96 -37.50 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -3.08 Total: 1.25 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -3.08 Total: -6.85 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: 0.84 Total: -46.82 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.12 Total: -5.67 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.54 -5.96 -37.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260147877.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.366 kcal (2) G-P(sol) polarization free energy of solvation -31.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds