Wall clock time and date at job start Mon Mar 30 2020 06:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35978 * 116.99973 * 2 1 4 4 C 1.39182 * 119.89525 * 0.02562 * 3 2 1 5 5 C 1.37752 * 120.52723 * 180.02562 * 4 3 2 6 6 C 1.38962 * 120.01800 * 359.97438 * 5 4 3 7 7 O 1.34991 * 133.16490 * 180.02562 * 6 5 4 8 8 N 1.41335 * 109.47720 * 179.97438 * 7 6 5 9 9 C 1.30417 * 109.62381 * 0.02562 * 8 7 6 10 10 N 1.38788 * 126.37515 * 179.97438 * 9 8 7 11 11 C 1.46506 * 119.99834 * 0.02562 * 10 9 8 12 12 C 1.50698 * 109.46591 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00609 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99714 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00219 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00161 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47310 * 89.99971 * 16 14 12 18 18 H 1.48503 * 109.47116 * 210.00220 * 16 14 12 19 19 H 1.48508 * 109.46921 * 329.99815 * 16 14 12 20 20 C 1.40265 * 119.61064 * 359.97438 * 6 5 4 21 21 C 1.38120 * 119.89080 * 180.02562 * 3 2 1 22 22 H 1.08995 * 109.47309 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.46713 * 299.99833 * 1 2 3 24 24 H 1.08998 * 109.47319 * 59.98785 * 1 2 3 25 25 H 1.08005 * 119.73369 * 0.02562 * 4 3 2 26 26 H 1.08001 * 119.99135 * 179.97438 * 5 4 3 27 27 H 0.96996 * 119.99722 * 180.02562 * 10 9 8 28 28 H 1.08994 * 109.47173 * 299.99629 * 11 10 9 29 29 H 1.09000 * 109.46703 * 60.00474 * 11 10 9 30 30 H 0.96994 * 120.00141 * 179.97438 * 15 14 12 31 31 H 1.08005 * 120.17566 * 359.96169 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2862 2.3775 0.0005 5 6 1.8980 3.6117 0.0000 6 6 3.2848 3.7001 -0.0005 7 8 4.1437 4.7415 -0.0007 8 7 5.4715 4.2573 -0.0007 9 6 5.4621 2.9531 -0.0011 10 7 6.5736 2.1220 -0.0018 11 6 7.9200 2.6994 -0.0015 12 6 8.9416 1.5916 -0.0030 13 1 8.6202 0.5605 -0.0037 14 6 10.2867 1.8942 -0.0025 15 7 11.1783 0.9275 -0.0033 16 14 10.8428 3.6775 0.0008 17 1 10.9902 4.1475 1.4017 18 1 12.1477 3.7904 -0.6991 19 1 9.8326 4.5123 -0.6977 20 6 4.0541 2.5273 0.0000 21 6 3.4258 1.2812 -0.0005 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5140 -0.8898 25 1 0.2080 2.3139 0.0014 26 1 1.2997 4.5108 0.0000 27 1 6.4589 1.1588 -0.0025 28 1 8.0514 3.3154 -0.8911 29 1 8.0514 3.3142 0.8890 30 1 12.1246 1.1404 -0.0033 31 1 4.0151 0.3761 -0.0003 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260147877.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:25 Heat of formation + Delta-G solvation = 9.243485 kcal Electronic energy + Delta-G solvation = -17004.192982 eV Core-core repulsion = 14059.936273 eV Total energy + Delta-G solvation = -2944.256709 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.61143 -40.49668 -37.77479 -37.28672 -34.99385 -33.22028 -31.57742 -30.50403 -29.45465 -27.93371 -24.81024 -24.01276 -23.13257 -21.92341 -19.70144 -19.11383 -18.40388 -17.53129 -17.18483 -17.07508 -16.46706 -16.29611 -15.99704 -15.46509 -15.17820 -14.96726 -14.54970 -14.33614 -13.91947 -13.30342 -13.11085 -13.09572 -12.91245 -12.46031 -12.19696 -11.94318 -11.86573 -11.79376 -11.71149 -10.92586 -10.19233 -9.56822 -8.82623 -8.42803 -6.51189 -0.36955 0.27312 1.28939 1.33285 1.34163 1.46633 1.56666 2.07838 2.26158 2.51975 2.52389 2.92361 3.27454 3.58674 3.81327 3.89224 4.11950 4.33682 4.46163 4.50212 4.61606 4.75720 4.84822 4.89709 4.93874 5.07564 5.10802 5.19794 5.32673 5.74833 6.07009 6.36228 6.39177 6.49833 6.83028 7.15666 8.72043 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.035427 B = 0.004939 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.177317 B = 5668.323594 C = 6438.053637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.332 6.332 3 C 0.095 3.905 4 C -0.126 4.126 5 C -0.086 4.086 6 C 0.042 3.958 7 O -0.114 6.114 8 N -0.404 5.404 9 C 0.368 3.632 10 N -0.670 5.670 11 C 0.241 3.759 12 C -0.551 4.551 13 H 0.058 0.942 14 C 0.029 3.971 15 N -0.929 5.929 16 Si 0.938 3.062 17 H -0.264 1.264 18 H -0.272 1.272 19 H -0.257 1.257 20 C -0.178 4.178 21 C -0.090 4.090 22 H 0.116 0.884 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.187 0.813 26 H 0.174 0.826 27 H 0.420 0.580 28 H 0.017 0.983 29 H 0.016 0.984 30 H 0.274 0.726 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.664 0.941 0.012 24.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.246 6.246 3 C 0.049 3.951 4 C -0.145 4.145 5 C -0.106 4.106 6 C -0.011 4.011 7 O -0.120 6.120 8 N -0.174 5.174 9 C 0.096 3.904 10 N -0.311 5.311 11 C 0.118 3.882 12 C -0.589 4.589 13 H 0.077 0.923 14 C -0.171 4.171 15 N -0.568 5.568 16 Si 0.761 3.239 17 H -0.188 1.188 18 H -0.197 1.197 19 H -0.181 1.181 20 C -0.183 4.183 21 C -0.111 4.111 22 H 0.135 0.865 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.204 0.796 26 H 0.191 0.809 27 H 0.258 0.742 28 H 0.035 0.965 29 H 0.034 0.966 30 H 0.083 0.917 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -23.636 1.944 0.012 23.715 hybrid contribution 0.486 -0.458 0.014 0.668 sum -23.150 1.485 0.025 23.197 Atomic orbital electron populations 1.23454 0.75838 1.05890 1.02861 1.86102 1.23901 1.25580 1.89028 1.18627 0.91029 0.85759 0.99652 1.21608 1.02238 0.89545 1.01119 1.20211 0.87526 1.00357 1.02468 1.20622 0.94019 0.86551 0.99927 1.89058 1.11731 1.27416 1.83770 1.80284 0.91653 1.08416 1.37018 1.21465 0.87861 0.90477 0.90569 1.44103 1.01800 1.07544 1.77638 1.19257 0.78680 0.94270 0.95969 1.21197 0.91004 0.93398 1.53254 0.92346 1.25575 0.96339 1.01875 0.93346 1.69975 1.02221 1.34302 1.50291 0.85857 0.78583 0.79894 0.79596 1.18839 1.19688 1.18138 1.20187 0.89139 0.95842 1.13170 1.19844 0.92978 0.95913 1.02350 0.86530 0.90942 0.90950 0.79591 0.80884 0.74178 0.96504 0.96632 0.91696 0.84064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.23 16 2 O -0.33 -6.32 10.49 -93.30 -0.98 -7.30 16 3 C 0.09 2.06 6.68 22.47 0.15 2.21 16 4 C -0.13 -2.06 9.01 22.38 0.20 -1.86 16 5 C -0.09 -1.77 10.06 22.33 0.22 -1.54 16 6 C 0.04 1.32 7.47 22.94 0.17 1.49 16 7 O -0.11 -4.41 12.06 28.17 0.34 -4.07 16 8 N -0.40 -17.79 12.49 -51.03 -0.64 -18.43 16 9 C 0.37 15.05 8.15 135.83 1.11 16.16 16 10 N -0.67 -28.62 5.71 -342.88 -1.96 -30.58 16 11 C 0.24 11.95 4.84 85.63 0.41 12.36 16 12 C -0.55 -30.76 9.83 25.60 0.25 -30.51 16 13 H 0.06 3.45 7.84 -2.91 -0.02 3.43 16 14 C 0.03 1.67 5.47 84.65 0.46 2.13 16 15 N -0.93 -55.77 13.96 21.45 0.30 -55.47 16 16 Si 0.94 43.94 27.47 68.60 1.88 45.83 16 17 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 19 H -0.26 -11.87 6.54 99.48 0.65 -11.22 16 20 C -0.18 -6.01 6.35 -20.14 -0.13 -6.13 16 21 C -0.09 -2.50 10.03 22.56 0.23 -2.28 16 22 H 0.12 0.61 8.14 -2.39 -0.02 0.60 16 23 H 0.07 0.39 7.65 -2.38 -0.02 0.37 16 24 H 0.07 0.39 7.65 -2.39 -0.02 0.37 16 25 H 0.19 1.32 6.26 -2.91 -0.02 1.30 16 26 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 27 H 0.42 16.27 8.45 -92.71 -0.78 15.49 16 28 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 29 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 30 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 31 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -70.51 275.83 3.48 -67.04 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 0.33 Total: 9.72 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: 4.19 Total: -6.74 kcal Atomic # 7 Polarization: -102.18 SS G_CDS: -2.30 Total: -104.48 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -0.64 Total: -11.36 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.83 kcal Total: -70.51 3.48 -67.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260147877.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.280 kcal (2) G-P(sol) polarization free energy of solvation -70.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds