Wall clock time and date at job start Mon Mar 30 2020 06:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.39875 * 125.47336 * 2 1 4 4 C 1.30247 * 110.06612 * 180.02562 * 3 2 1 5 5 C 1.50704 * 126.09413 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47485 * 270.04521 * 5 4 3 7 7 C 1.50691 * 109.47111 * 180.02562 * 6 5 4 8 8 H 1.08005 * 120.00578 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99997 * 179.97438 * 7 6 5 10 10 N 1.31509 * 119.99625 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00196 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47082 * 89.99847 * 11 9 7 13 13 H 1.48500 * 109.47327 * 210.00111 * 11 9 7 14 14 H 1.48506 * 109.47079 * 330.00269 * 11 9 7 15 15 C 1.45936 * 107.80729 * 0.02562 * 4 3 2 16 16 C 1.40003 * 133.92859 * 180.02562 * 15 4 3 17 17 C 1.36417 * 119.82251 * 180.27667 * 16 15 4 18 18 C 1.38986 * 120.65243 * 359.39721 * 17 16 15 19 19 C 1.37770 * 120.64112 * 0.62653 * 18 17 16 20 20 F 1.35101 * 120.15187 * 179.66436 * 19 18 17 21 21 C 1.37108 * 125.47227 * 180.02562 * 2 1 3 22 22 H 1.08992 * 109.46903 * 89.97299 * 1 2 3 23 23 H 1.09000 * 109.46959 * 209.97806 * 1 2 3 24 24 H 1.09002 * 109.46866 * 329.97258 * 1 2 3 25 25 H 1.09001 * 109.46874 * 30.05044 * 5 4 3 26 26 H 1.09010 * 109.46973 * 150.04437 * 5 4 3 27 27 H 1.09005 * 109.46650 * 300.00415 * 6 5 4 28 28 H 1.08999 * 109.46702 * 59.99714 * 6 5 4 29 29 H 0.97004 * 119.99972 * 179.97438 * 10 9 7 30 30 H 1.08002 * 120.08538 * 359.97438 * 16 15 4 31 31 H 1.07993 * 119.67091 * 179.69919 * 17 16 15 32 32 H 1.08007 * 119.67909 * 180.30315 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2767 1.1391 0.0000 4 6 3.5324 0.7931 -0.0005 5 6 4.7119 1.7312 -0.0013 6 6 5.1097 2.0494 -1.4440 7 6 6.2894 2.9869 -1.4446 8 1 6.7129 3.3227 -0.5096 9 6 6.8283 3.4162 -2.6390 10 7 6.3129 3.0069 -3.7776 11 14 8.2902 4.5789 -2.6399 12 1 9.5492 3.7913 -2.6407 13 1 8.2411 5.4350 -3.8523 14 1 8.2427 5.4348 -1.4272 15 6 3.5935 -0.6650 -0.0016 16 6 4.6416 -1.5932 -0.0020 17 6 4.3649 -2.9290 -0.0087 18 6 3.0503 -3.3803 -0.0026 19 6 2.0013 -2.4872 -0.0025 20 9 0.7273 -2.9368 -0.0034 21 6 2.2607 -1.1166 -0.0005 22 1 -0.3633 0.0005 -1.0276 23 1 -0.3633 -0.8902 0.5135 24 1 -0.3633 0.8898 0.5143 25 1 4.4427 2.6536 0.5133 26 1 5.5508 1.2606 0.5116 27 1 5.3788 1.1268 -1.9585 28 1 4.2708 2.5199 -1.9568 29 1 6.6917 3.3091 -4.6179 30 1 5.6665 -1.2525 -0.0020 31 1 5.1752 -3.6428 -0.0140 32 1 2.8492 -4.4415 -0.0031 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260153191.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:53 Heat of formation + Delta-G solvation = 28.510953 kcal Electronic energy + Delta-G solvation = -17219.164053 eV Core-core repulsion = 14288.115634 eV Total energy + Delta-G solvation = -2931.048419 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.84565 -40.99153 -36.99932 -34.59850 -32.84725 -30.64590 -29.98647 -29.78586 -26.58951 -24.69476 -22.94013 -22.12147 -21.34666 -19.29346 -17.44959 -16.95136 -16.29361 -15.92227 -15.89442 -15.24762 -14.84242 -14.46238 -14.44807 -13.26882 -13.24460 -12.97788 -12.75740 -12.61982 -12.19373 -11.57973 -11.57333 -11.44645 -11.04317 -10.96518 -10.66260 -10.50347 -9.93932 -9.84327 -9.29041 -9.13557 -8.58862 -8.36067 -7.56174 -6.00868 -4.04438 0.93538 1.48837 2.53117 2.71384 3.32356 3.38871 3.42086 3.77201 4.19445 4.45056 4.57243 4.60703 4.91484 5.00703 5.24414 5.32026 5.35158 5.36330 5.47533 5.70053 5.81283 6.02484 6.16266 6.40648 6.46042 6.55558 6.66768 6.84202 7.01234 7.12128 7.65040 7.72666 7.97017 7.97756 8.36031 9.02101 9.59730 11.10338 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.032946 B = 0.005209 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.680087 B = 5374.092985 C = 5843.991922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.412 5.412 3 N -0.255 5.255 4 C 0.131 3.869 5 C -0.040 4.040 6 C 0.031 3.969 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.058 3.942 10 N -0.893 5.893 11 Si 0.894 3.106 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.273 1.273 15 C -0.149 4.149 16 C -0.032 4.032 17 C -0.148 4.148 18 C -0.105 4.105 19 C 0.061 3.939 20 F -0.145 7.145 21 C 0.097 3.903 22 H 0.067 0.933 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.261 0.739 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.684 -11.748 8.367 16.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.198 5.198 3 N -0.067 5.067 4 C -0.047 4.047 5 C -0.079 4.079 6 C -0.007 4.007 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.143 4.143 10 N -0.532 5.532 11 Si 0.721 3.279 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.157 4.157 16 C -0.052 4.052 17 C -0.168 4.168 18 C -0.126 4.126 19 C 0.038 3.962 20 F -0.124 7.124 21 C -0.019 4.019 22 H 0.086 0.914 23 H 0.101 0.899 24 H 0.105 0.895 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.071 0.929 30 H 0.157 0.843 31 H 0.152 0.848 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.795 -10.736 8.184 16.112 hybrid contribution 0.801 -0.171 -0.268 0.862 sum -7.994 -10.907 7.916 15.670 Atomic orbital electron populations 1.21750 0.74276 1.03963 1.02974 1.48199 1.05764 1.00832 1.65038 1.76735 1.02370 1.07082 1.20476 1.24282 0.93525 0.91682 0.95185 1.20464 0.89565 0.95033 1.02844 1.19067 0.96586 0.97023 0.88025 1.21179 1.14356 1.28010 0.92501 0.92316 1.25014 0.97234 0.96470 0.95603 1.69976 1.41214 1.44728 0.97317 0.86571 0.82830 0.80907 0.77555 1.20610 1.21274 1.19789 1.19811 0.91671 0.93641 1.10570 1.20555 0.98783 0.91715 0.94196 1.20439 0.95559 0.95535 1.05238 1.20904 0.91737 0.99091 1.00900 1.16524 0.79367 0.88297 1.12027 1.91430 1.36643 1.89546 1.94811 1.18789 0.92343 0.88220 1.02564 0.91414 0.89940 0.89462 0.90778 0.90477 0.96141 0.96172 0.92937 0.84334 0.84751 0.84494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.41 11.20 59.85 0.67 2.08 16 2 N -0.41 -7.17 4.05 -65.42 -0.27 -7.43 16 3 N -0.25 -5.10 12.40 34.84 0.43 -4.67 16 4 C 0.13 2.60 6.68 -80.18 -0.54 2.06 16 5 C -0.04 -0.82 5.75 -27.88 -0.16 -0.98 16 6 C 0.03 0.80 4.95 -27.89 -0.14 0.66 16 7 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 10 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 11 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 14 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 15 C -0.15 -2.65 6.33 -105.21 -0.67 -3.32 16 16 C -0.03 -0.47 10.06 -39.58 -0.40 -0.87 16 17 C -0.15 -1.80 9.96 -39.96 -0.40 -2.20 16 18 C -0.11 -1.29 9.99 -39.48 -0.39 -1.68 16 19 C 0.06 0.90 7.32 -39.28 -0.29 0.61 16 20 F -0.15 -2.02 15.92 2.25 0.04 -1.98 16 21 C 0.10 1.67 6.88 -84.10 -0.58 1.09 16 22 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.08 0.89 7.04 -51.93 -0.37 0.53 16 24 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 26 H 0.08 1.43 8.14 -51.92 -0.42 1.01 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.14 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 286.33 15.07 4.31 4.31 Total: -1.00 -31.94 286.33 -6.78 -38.72 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: -3.71 Total: -3.47 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -3.30 Total: -15.72 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.90 Total: -38.13 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.94 -6.78 -38.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260153191.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.227 kcal (2) G-P(sol) polarization free energy of solvation -31.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds