Wall clock time and date at job start Mon Mar 30 2020 06:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.39875 * 125.47336 * 2 1 4 4 C 1.30247 * 110.06612 * 180.02562 * 3 2 1 5 5 C 1.50704 * 126.09413 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47485 * 270.04521 * 5 4 3 7 7 C 1.50691 * 109.47111 * 180.02562 * 6 5 4 8 8 H 1.08005 * 120.00578 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99997 * 179.97438 * 7 6 5 10 10 N 1.31509 * 119.99625 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00196 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47082 * 89.99847 * 11 9 7 13 13 H 1.48500 * 109.47327 * 210.00111 * 11 9 7 14 14 H 1.48506 * 109.47079 * 330.00269 * 11 9 7 15 15 C 1.45936 * 107.80729 * 0.02562 * 4 3 2 16 16 C 1.40003 * 133.92859 * 180.02562 * 15 4 3 17 17 C 1.36417 * 119.82251 * 180.27667 * 16 15 4 18 18 C 1.38986 * 120.65243 * 359.39721 * 17 16 15 19 19 C 1.37770 * 120.64112 * 0.62653 * 18 17 16 20 20 F 1.35101 * 120.15187 * 179.66436 * 19 18 17 21 21 C 1.37108 * 125.47227 * 180.02562 * 2 1 3 22 22 H 1.08992 * 109.46903 * 89.97299 * 1 2 3 23 23 H 1.09000 * 109.46959 * 209.97806 * 1 2 3 24 24 H 1.09002 * 109.46866 * 329.97258 * 1 2 3 25 25 H 1.09001 * 109.46874 * 30.05044 * 5 4 3 26 26 H 1.09010 * 109.46973 * 150.04437 * 5 4 3 27 27 H 1.09005 * 109.46650 * 300.00415 * 6 5 4 28 28 H 1.08999 * 109.46702 * 59.99714 * 6 5 4 29 29 H 0.97004 * 119.99972 * 179.97438 * 10 9 7 30 30 H 1.08002 * 120.08538 * 359.97438 * 16 15 4 31 31 H 1.07993 * 119.67091 * 179.69919 * 17 16 15 32 32 H 1.08007 * 119.67909 * 180.30315 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2767 1.1391 0.0000 4 6 3.5324 0.7931 -0.0005 5 6 4.7119 1.7312 -0.0013 6 6 5.1097 2.0494 -1.4440 7 6 6.2894 2.9869 -1.4446 8 1 6.7129 3.3227 -0.5096 9 6 6.8283 3.4162 -2.6390 10 7 6.3129 3.0069 -3.7776 11 14 8.2902 4.5789 -2.6399 12 1 9.5492 3.7913 -2.6407 13 1 8.2411 5.4350 -3.8523 14 1 8.2427 5.4348 -1.4272 15 6 3.5935 -0.6650 -0.0016 16 6 4.6416 -1.5932 -0.0020 17 6 4.3649 -2.9290 -0.0087 18 6 3.0503 -3.3803 -0.0026 19 6 2.0013 -2.4872 -0.0025 20 9 0.7273 -2.9368 -0.0034 21 6 2.2607 -1.1166 -0.0005 22 1 -0.3633 0.0005 -1.0276 23 1 -0.3633 -0.8902 0.5135 24 1 -0.3633 0.8898 0.5143 25 1 4.4427 2.6536 0.5133 26 1 5.5508 1.2606 0.5116 27 1 5.3788 1.1268 -1.9585 28 1 4.2708 2.5199 -1.9568 29 1 6.6917 3.3091 -4.6179 30 1 5.6665 -1.2525 -0.0020 31 1 5.1752 -3.6428 -0.0140 32 1 2.8492 -4.4415 -0.0031 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260153191.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:53 Heat of formation + Delta-G solvation = 9.726149 kcal Electronic energy + Delta-G solvation = -17219.978623 eV Core-core repulsion = 14288.115634 eV Total energy + Delta-G solvation = -2931.862989 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.92736 -42.25829 -38.13421 -36.30518 -34.63487 -32.39045 -31.09966 -30.97763 -28.23142 -26.25808 -24.16819 -23.54704 -22.93291 -20.68802 -18.68256 -18.52556 -17.96405 -17.11457 -17.00365 -16.50122 -16.47423 -15.97635 -15.47598 -14.88437 -14.77357 -14.32709 -14.06726 -13.91810 -13.72845 -13.18449 -12.84935 -12.68316 -12.61483 -12.47374 -12.38577 -12.10045 -11.72523 -11.55910 -11.25013 -10.73761 -10.53788 -9.78408 -8.77193 -8.17219 -6.29476 -0.22916 0.36007 1.31122 1.35754 1.45082 1.46506 1.57721 2.44479 2.63258 3.06175 3.16697 3.37791 3.45704 3.71484 3.93138 4.23031 4.27724 4.32329 4.48061 4.50879 4.59166 4.76278 4.81905 4.95115 5.03517 5.16644 5.40813 5.48934 5.51111 5.64369 5.79576 5.83424 5.97431 6.21322 6.57189 6.86896 7.40287 8.94935 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.032946 B = 0.005209 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.680087 B = 5374.092985 C = 5843.991922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.418 5.418 3 N -0.284 5.284 4 C 0.106 3.894 5 C -0.024 4.024 6 C 0.042 3.958 7 C -0.539 4.539 8 H 0.071 0.929 9 C 0.000 4.000 10 N -0.936 5.936 11 Si 0.969 3.031 12 H -0.268 1.268 13 H -0.287 1.287 14 H -0.261 1.261 15 C -0.175 4.175 16 C -0.049 4.049 17 C -0.130 4.130 18 C -0.088 4.088 19 C 0.050 3.950 20 F -0.142 7.142 21 C 0.077 3.923 22 H 0.074 0.926 23 H 0.101 0.899 24 H 0.098 0.902 25 H 0.073 0.927 26 H 0.097 0.903 27 H -0.003 1.003 28 H -0.020 1.020 29 H 0.263 0.737 30 H 0.146 0.854 31 H 0.176 0.824 32 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.809 -13.456 9.352 17.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.206 5.206 3 N -0.098 5.098 4 C -0.071 4.071 5 C -0.063 4.063 6 C 0.004 3.996 7 C -0.577 4.577 8 H 0.089 0.911 9 C -0.198 4.198 10 N -0.577 5.577 11 Si 0.793 3.207 12 H -0.194 1.194 13 H -0.213 1.213 14 H -0.185 1.185 15 C -0.183 4.183 16 C -0.070 4.070 17 C -0.149 4.149 18 C -0.109 4.109 19 C 0.027 3.973 20 F -0.121 7.121 21 C -0.039 4.039 22 H 0.093 0.907 23 H 0.120 0.880 24 H 0.117 0.883 25 H 0.091 0.909 26 H 0.116 0.884 27 H 0.015 0.985 28 H -0.002 1.002 29 H 0.072 0.928 30 H 0.163 0.837 31 H 0.193 0.807 32 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -7.929 -12.455 9.191 17.391 hybrid contribution 0.447 0.230 -0.580 0.768 sum -7.482 -12.225 8.610 16.720 Atomic orbital electron populations 1.22055 0.72138 1.05495 1.03915 1.48485 1.06944 1.00318 1.64824 1.76567 1.03010 1.09182 1.20997 1.24112 0.93222 0.92974 0.96759 1.20146 0.91021 0.95717 0.99437 1.18837 0.94774 0.95260 0.90734 1.21639 1.14737 1.28135 0.93150 0.91056 1.26010 1.00434 0.98259 0.95105 1.70130 1.43080 1.46342 0.98105 0.85390 0.78963 0.78548 0.77792 1.19360 1.21283 1.18478 1.20018 0.93177 0.92913 1.12211 1.20835 0.98514 0.92651 0.94953 1.20927 0.96811 0.94938 1.02230 1.21430 0.90907 1.00670 0.97869 1.16753 0.80282 0.87612 1.12695 1.91437 1.36491 1.89280 1.94854 1.19153 0.92143 0.89219 1.03405 0.90723 0.88023 0.88330 0.90884 0.88436 0.98473 1.00187 0.92839 0.83661 0.80656 0.80494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.59 11.20 127.77 1.43 4.02 16 2 N -0.42 -14.74 4.05 -360.88 -1.46 -16.21 16 3 N -0.28 -11.85 12.40 -43.68 -0.54 -12.40 16 4 C 0.11 4.38 6.68 44.79 0.30 4.68 16 5 C -0.02 -1.02 5.75 29.85 0.17 -0.85 16 6 C 0.04 2.27 4.95 29.85 0.15 2.42 16 7 C -0.54 -30.20 9.11 25.60 0.23 -29.97 16 8 H 0.07 3.73 7.74 -2.91 -0.02 3.70 16 9 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 10 N -0.94 -57.55 13.29 21.45 0.28 -57.27 16 11 Si 0.97 43.73 29.54 68.60 2.03 45.75 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 13 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 14 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 15 C -0.18 -6.30 6.33 -20.25 -0.13 -6.43 16 16 C -0.05 -1.39 10.06 22.27 0.22 -1.17 16 17 C -0.13 -2.70 9.96 22.02 0.22 -2.48 16 18 C -0.09 -1.82 9.99 22.34 0.22 -1.60 16 19 C 0.05 1.36 7.32 22.46 0.16 1.53 16 20 F -0.14 -3.63 15.92 44.97 0.72 -2.91 16 21 C 0.08 2.61 6.88 39.23 0.27 2.88 16 22 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.10 2.09 7.04 -2.39 -0.02 2.08 16 24 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 26 H 0.10 3.66 8.14 -2.38 -0.02 3.64 16 27 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 28 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 29 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 30 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 31 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 32 H 0.18 2.27 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -71.40 286.33 5.87 -65.53 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: 1.12 Total: 4.03 kcal Atomic # 6 Polarization: -30.25 SS G_CDS: 3.72 Total: -26.53 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -1.72 Total: -85.87 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.72 Total: -2.91 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -71.40 5.87 -65.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260153191.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.261 kcal (2) G-P(sol) polarization free energy of solvation -71.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds