Wall clock time and date at job start Mon Mar 30 2020 06:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47036 * 2 1 4 4 C 1.35779 * 117.00010 * 180.02562 * 3 2 1 5 5 C 1.39095 * 120.92898 * 359.97438 * 4 3 2 6 6 C 1.38316 * 119.40919 * 180.02562 * 5 4 3 7 7 N 1.31675 * 121.36677 * 0.02562 * 6 5 4 8 8 C 1.33091 * 121.62109 * 359.97438 * 7 6 5 9 9 N 1.35968 * 133.48669 * 179.97438 * 8 7 6 10 10 C 1.30018 * 108.89988 * 179.23475 * 9 8 7 11 11 C 1.50705 * 124.88100 * 180.09750 * 10 9 8 12 12 C 1.50698 * 109.47303 * 90.68398 * 11 10 9 13 13 H 1.08000 * 119.99857 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00220 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99787 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00100 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47316 * 89.99789 * 16 14 12 18 18 H 1.48499 * 109.46907 * 210.00268 * 16 14 12 19 19 H 1.48507 * 109.46834 * 329.99912 * 16 14 12 20 20 O 1.34132 * 110.23278 * 0.69677 * 10 9 8 21 21 C 1.35016 * 108.05258 * 359.39712 * 20 10 9 22 22 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46801 * 300.00369 * 1 2 3 24 24 H 1.09001 * 109.46998 * 59.99965 * 1 2 3 25 25 H 1.09001 * 109.47002 * 119.99477 * 2 1 3 26 26 H 1.08993 * 109.46955 * 239.99914 * 2 1 3 27 27 H 1.07998 * 120.29966 * 0.02702 * 5 4 3 28 28 H 1.08006 * 119.31577 * 180.02562 * 6 5 4 29 29 H 1.08996 * 109.46965 * 210.68439 * 11 10 9 30 30 H 1.09001 * 109.47320 * 330.68420 * 11 10 9 31 31 H 0.97000 * 119.99696 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3524 1.5252 -0.0005 5 6 4.2176 0.4360 -0.0005 6 6 5.5835 0.6535 -0.0006 7 7 6.0835 1.8716 -0.0001 8 6 5.3001 2.9475 -0.0001 9 7 5.5467 4.2846 0.0008 10 6 4.4136 4.9219 -0.0161 11 6 4.2684 6.4220 -0.0230 12 6 4.2216 6.9156 -1.4461 13 1 4.2897 6.2132 -2.2638 14 6 4.0908 8.2636 -1.7044 15 7 4.0074 9.1188 -0.7087 16 14 4.0320 8.8753 -3.4684 17 1 2.6230 8.9021 -3.9364 18 1 4.6025 10.2447 -3.5366 19 1 4.8241 7.9654 -4.3344 20 8 3.3922 4.0524 -0.0132 21 6 3.9058 2.8038 -0.0071 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 3.8263 -0.5706 -0.0005 28 1 6.2539 -0.1933 -0.0010 29 1 3.3470 6.7002 0.4885 30 1 5.1187 6.8717 0.4897 31 1 3.9150 10.0671 -0.8904 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260160502.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:18 Heat of formation + Delta-G solvation = 5.970197 kcal Electronic energy + Delta-G solvation = -17219.405311 eV Core-core repulsion = 14275.006662 eV Total energy + Delta-G solvation = -2944.398649 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.86750 -39.89071 -37.96888 -34.31243 -33.34391 -32.32997 -30.75286 -30.45849 -28.28281 -24.51143 -24.10726 -23.00425 -21.86418 -20.89017 -18.58812 -17.75669 -17.17792 -16.98602 -16.43601 -15.74897 -15.00536 -14.68824 -14.46626 -13.78560 -13.48604 -12.97951 -12.90297 -12.88999 -12.83642 -12.40008 -11.73395 -11.49702 -11.37385 -10.98660 -10.83584 -10.54680 -10.34785 -10.15663 -9.67750 -9.24142 -8.62033 -8.58214 -8.36460 -6.25190 -4.31116 0.90259 1.27582 2.74247 2.84692 2.99900 3.25106 3.31141 3.36921 3.90305 3.99089 4.32615 4.54699 4.63741 4.75623 4.81029 4.87644 4.97217 5.12241 5.28138 5.30211 5.51659 5.59712 5.76498 5.83900 6.10510 6.29104 6.67042 7.04472 7.09246 7.12973 7.68169 7.89411 7.93168 8.34029 8.68931 9.33614 10.85179 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.025671 B = 0.005527 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.483048 B = 5065.171456 C = 5678.717611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.305 6.305 4 C 0.213 3.787 5 C -0.275 4.275 6 C 0.157 3.843 7 N -0.473 5.473 8 C 0.280 3.720 9 N -0.500 5.500 10 C 0.338 3.662 11 C 0.095 3.905 12 C -0.525 4.525 13 H 0.063 0.937 14 C 0.067 3.933 15 N -0.888 5.888 16 Si 0.908 3.092 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.271 1.271 20 O -0.199 6.199 21 C -0.095 4.095 22 H 0.079 0.921 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.149 0.851 28 H 0.169 0.831 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.021 -18.189 2.046 18.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.216 6.216 4 C 0.158 3.842 5 C -0.297 4.297 6 C -0.010 4.010 7 N -0.188 5.188 8 C 0.042 3.958 9 N -0.231 5.231 10 C 0.129 3.871 11 C 0.058 3.942 12 C -0.563 4.563 13 H 0.081 0.919 14 C -0.137 4.137 15 N -0.525 5.525 16 Si 0.735 3.265 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.196 1.196 20 O -0.090 6.090 21 C -0.150 4.150 22 H 0.098 0.902 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.167 0.833 28 H 0.186 0.814 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.776 -17.361 2.112 17.892 hybrid contribution -1.557 -0.374 -0.928 1.851 sum -5.334 -17.735 1.185 18.557 Atomic orbital electron populations 1.21789 0.92386 1.02885 1.03953 1.22902 0.96265 0.81390 1.01757 1.86180 1.17956 1.29968 1.87543 1.17945 0.83231 0.88972 0.94032 1.21855 0.94957 0.97841 1.15089 1.22472 0.92330 0.93364 0.92833 1.66865 1.38662 0.96765 1.16526 1.20552 0.85772 0.92104 0.97353 1.70816 1.26515 1.00229 1.25557 1.28437 0.77600 0.96538 0.84537 1.18418 1.01363 0.73958 1.00485 1.20783 1.52963 0.92729 0.89869 0.91914 1.24923 0.94277 0.96227 0.98226 1.69922 1.48407 1.02998 1.31166 0.86323 0.78463 0.78190 0.83562 1.20303 1.20763 1.19572 1.84648 1.37709 1.13041 1.73583 1.20510 0.95228 0.84973 1.14243 0.90176 0.91323 0.91267 0.91564 0.91542 0.83315 0.81404 0.92206 0.90535 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.80 16 2 C 0.05 0.48 5.49 37.16 0.20 0.69 16 3 O -0.31 -4.57 10.16 -19.05 -0.19 -4.77 16 4 C 0.21 3.51 6.74 -38.86 -0.26 3.25 16 5 C -0.28 -3.49 9.11 -39.23 -0.36 -3.85 16 6 C 0.16 2.16 11.15 -17.59 -0.20 1.96 16 7 N -0.47 -9.03 10.41 -12.75 -0.13 -9.17 16 8 C 0.28 6.14 8.38 -156.91 -1.32 4.83 16 9 N -0.50 -12.19 11.33 -10.26 -0.12 -12.30 16 10 C 0.34 8.16 7.43 -13.04 -0.10 8.06 16 11 C 0.10 2.42 5.60 -29.03 -0.16 2.26 16 12 C -0.52 -14.49 9.09 -34.44 -0.31 -14.81 16 13 H 0.06 1.75 7.74 -52.49 -0.41 1.35 16 14 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 15 N -0.89 -24.96 13.29 55.43 0.74 -24.23 16 16 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 O -0.20 -4.59 10.77 4.17 0.04 -4.55 16 21 C -0.10 -1.98 7.41 -38.45 -0.28 -2.27 16 22 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.50 7.71 -51.93 -0.40 0.10 16 26 H 0.07 0.52 7.71 -51.93 -0.40 0.11 16 27 H 0.15 1.23 6.46 -52.49 -0.34 0.89 16 28 H 0.17 1.51 8.06 -52.48 -0.42 1.09 16 29 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 30 H 0.08 1.99 8.14 -51.93 -0.42 1.56 16 31 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 279.65 15.07 4.21 4.21 Total: -1.00 -32.10 279.65 -6.18 -38.28 By element: Atomic # 1 Polarization: -1.41 SS G_CDS: -3.22 Total: -4.63 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -2.50 Total: 1.06 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 0.49 Total: -45.70 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -0.15 Total: -9.31 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.10 -6.18 -38.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260160502.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.254 kcal (2) G-P(sol) polarization free energy of solvation -32.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds