Wall clock time and date at job start Mon Mar 30 2020 06:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47036 * 2 1 4 4 C 1.35779 * 117.00010 * 180.02562 * 3 2 1 5 5 C 1.39095 * 120.92898 * 359.97438 * 4 3 2 6 6 C 1.38316 * 119.40919 * 180.02562 * 5 4 3 7 7 N 1.31675 * 121.36677 * 0.02562 * 6 5 4 8 8 C 1.33091 * 121.62109 * 359.97438 * 7 6 5 9 9 N 1.35968 * 133.48669 * 179.97438 * 8 7 6 10 10 C 1.30018 * 108.89988 * 179.23475 * 9 8 7 11 11 C 1.50705 * 124.88100 * 180.09750 * 10 9 8 12 12 C 1.50698 * 109.47303 * 90.68398 * 11 10 9 13 13 H 1.08000 * 119.99857 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00220 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99787 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00100 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47316 * 89.99789 * 16 14 12 18 18 H 1.48499 * 109.46907 * 210.00268 * 16 14 12 19 19 H 1.48507 * 109.46834 * 329.99912 * 16 14 12 20 20 O 1.34132 * 110.23278 * 0.69677 * 10 9 8 21 21 C 1.35016 * 108.05258 * 359.39712 * 20 10 9 22 22 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46801 * 300.00369 * 1 2 3 24 24 H 1.09001 * 109.46998 * 59.99965 * 1 2 3 25 25 H 1.09001 * 109.47002 * 119.99477 * 2 1 3 26 26 H 1.08993 * 109.46955 * 239.99914 * 2 1 3 27 27 H 1.07998 * 120.29966 * 0.02702 * 5 4 3 28 28 H 1.08006 * 119.31577 * 180.02562 * 6 5 4 29 29 H 1.08996 * 109.46965 * 210.68439 * 11 10 9 30 30 H 1.09001 * 109.47320 * 330.68420 * 11 10 9 31 31 H 0.97000 * 119.99696 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3524 1.5252 -0.0005 5 6 4.2176 0.4360 -0.0005 6 6 5.5835 0.6535 -0.0006 7 7 6.0835 1.8716 -0.0001 8 6 5.3001 2.9475 -0.0001 9 7 5.5467 4.2846 0.0008 10 6 4.4136 4.9219 -0.0161 11 6 4.2684 6.4220 -0.0230 12 6 4.2216 6.9156 -1.4461 13 1 4.2897 6.2132 -2.2638 14 6 4.0908 8.2636 -1.7044 15 7 4.0074 9.1188 -0.7087 16 14 4.0320 8.8753 -3.4684 17 1 2.6230 8.9021 -3.9364 18 1 4.6025 10.2447 -3.5366 19 1 4.8241 7.9654 -4.3344 20 8 3.3922 4.0524 -0.0132 21 6 3.9058 2.8038 -0.0071 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 3.8263 -0.5706 -0.0005 28 1 6.2539 -0.1933 -0.0010 29 1 3.3470 6.7002 0.4885 30 1 5.1187 6.8717 0.4897 31 1 3.9150 10.0671 -0.8904 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260160502.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:18 Heat of formation + Delta-G solvation = -17.954399 kcal Electronic energy + Delta-G solvation = -17220.442760 eV Core-core repulsion = 14275.006662 eV Total energy + Delta-G solvation = -2945.436097 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.46059 -41.07078 -39.21211 -36.07371 -35.27101 -33.26717 -32.47440 -31.59047 -29.92078 -26.28724 -25.29738 -24.32188 -23.08276 -22.61421 -19.89151 -19.14562 -18.92821 -18.43954 -17.94010 -16.99280 -16.74901 -15.94961 -15.77191 -15.09012 -14.79138 -14.72075 -14.36223 -14.02903 -13.97322 -13.59522 -13.42302 -12.96349 -12.68175 -12.40423 -12.31200 -12.17623 -12.03736 -11.80789 -11.59062 -10.71647 -10.62104 -9.97538 -9.75253 -8.34624 -6.49253 -0.51276 -0.01734 1.21658 1.34109 1.41478 1.42155 1.54364 1.84504 2.34210 2.45554 2.61299 3.00126 3.34782 3.54337 3.61087 4.00957 4.03574 4.12415 4.26503 4.36292 4.52624 4.66419 4.76083 4.88254 4.90325 4.99314 5.04613 5.21070 5.36035 5.53887 5.82063 6.03595 6.41243 6.54323 6.86005 7.19400 8.76352 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.025671 B = 0.005527 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.483048 B = 5065.171456 C = 5678.717611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.037 3.963 3 O -0.330 6.330 4 C 0.207 3.793 5 C -0.240 4.240 6 C 0.170 3.830 7 N -0.503 5.503 8 C 0.244 3.756 9 N -0.524 5.524 10 C 0.317 3.683 11 C 0.106 3.894 12 C -0.548 4.548 13 H 0.051 0.949 14 C 0.022 3.978 15 N -0.915 5.915 16 Si 0.975 3.025 17 H -0.266 1.266 18 H -0.270 1.270 19 H -0.272 1.272 20 O -0.214 6.214 21 C -0.126 4.126 22 H 0.113 0.887 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.208 0.792 28 H 0.226 0.774 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.458 -21.725 1.242 22.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.036 4.036 3 O -0.242 6.242 4 C 0.152 3.848 5 C -0.260 4.260 6 C 0.003 3.997 7 N -0.220 5.220 8 C 0.009 3.991 9 N -0.256 5.256 10 C 0.106 3.894 11 C 0.069 3.931 12 C -0.586 4.586 13 H 0.069 0.931 14 C -0.179 4.179 15 N -0.553 5.553 16 Si 0.798 3.202 17 H -0.191 1.191 18 H -0.195 1.195 19 H -0.197 1.197 20 O -0.104 6.104 21 C -0.179 4.179 22 H 0.132 0.868 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.111 0.889 26 H 0.109 0.891 27 H 0.225 0.775 28 H 0.243 0.757 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.241 -20.922 1.321 21.388 hybrid contribution -1.467 0.383 -0.622 1.639 sum -5.708 -20.539 0.698 21.329 Atomic orbital electron populations 1.21860 0.91587 1.04692 1.02864 1.23429 0.97028 0.79041 1.04128 1.86180 1.17035 1.33806 1.87135 1.18261 0.84773 0.88013 0.93736 1.22525 0.93914 0.99069 1.10532 1.23568 0.94015 0.92798 0.89279 1.66940 1.39247 0.97649 1.18141 1.20624 0.86854 0.91835 0.99803 1.70618 1.26962 1.02501 1.25516 1.27807 0.78215 0.96125 0.87222 1.18050 1.00142 0.75469 0.99482 1.20993 1.53842 0.93248 0.90535 0.93078 1.25784 0.93434 0.96086 1.02585 1.70008 1.48575 1.03493 1.33224 0.85305 0.78907 0.77814 0.78195 1.19138 1.19505 1.19698 1.84549 1.37671 1.14319 1.73878 1.21114 0.95462 0.85381 1.15958 0.86823 0.92341 0.92524 0.88892 0.89128 0.77494 0.75746 0.93045 0.92129 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 10.28 71.98 0.74 -1.18 16 2 C 0.04 0.54 5.49 71.98 0.40 0.93 16 3 O -0.33 -9.24 10.16 -91.08 -0.92 -10.16 16 4 C 0.21 6.44 6.74 22.74 0.15 6.59 16 5 C -0.24 -4.88 9.11 22.49 0.20 -4.67 16 6 C 0.17 3.91 11.15 84.73 0.94 4.86 16 7 N -0.50 -18.59 10.41 -194.26 -2.02 -20.61 16 8 C 0.24 11.01 8.38 134.11 1.12 12.13 16 9 N -0.52 -27.05 11.33 -301.20 -3.41 -30.46 16 10 C 0.32 16.39 7.43 88.38 0.66 17.05 16 11 C 0.11 5.81 5.60 29.10 0.16 5.98 16 12 C -0.55 -31.77 9.09 25.60 0.23 -31.53 16 13 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 14 C 0.02 1.23 5.46 84.65 0.46 1.69 16 15 N -0.92 -52.83 13.29 21.45 0.28 -52.55 16 16 Si 0.97 43.84 29.54 68.60 2.03 45.87 16 17 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 O -0.21 -10.48 10.77 -7.98 -0.09 -10.56 16 21 C -0.13 -5.35 7.41 23.00 0.17 -5.18 16 22 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 23 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.09 0.88 7.71 -2.39 -0.02 0.86 16 26 H 0.09 0.90 7.71 -2.39 -0.02 0.88 16 27 H 0.21 1.76 6.46 -2.91 -0.02 1.74 16 28 H 0.23 2.51 8.06 -2.91 -0.02 2.48 16 29 H 0.05 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.06 3.41 8.14 -2.39 -0.02 3.39 16 31 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -75.84 279.65 2.26 -73.58 By element: Atomic # 1 Polarization: -2.91 SS G_CDS: 1.15 Total: -1.75 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 5.25 Total: 6.66 kcal Atomic # 7 Polarization: -98.47 SS G_CDS: -5.15 Total: -103.62 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -1.01 Total: -20.73 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -75.84 2.26 -73.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260160502.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.622 kcal (2) G-P(sol) polarization free energy of solvation -75.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds