Wall clock time and date at job start Mon Mar 30 2020 05:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46794 * 2 1 4 4 C 1.50697 * 109.47248 * 120.00007 * 2 1 3 5 5 H 1.08006 * 119.99824 * 354.73472 * 4 2 1 6 6 C 1.37871 * 120.00173 * 174.73041 * 4 2 1 7 7 N 1.31516 * 119.99783 * 3.00786 * 6 4 2 8 8 Si 1.86805 * 120.00094 * 182.73267 * 6 4 2 9 9 H 1.48501 * 109.46939 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47150 * 120.00002 * 8 6 4 11 11 H 1.48500 * 109.47047 * 240.00093 * 8 6 4 12 12 C 1.50696 * 109.47132 * 240.00540 * 2 1 3 13 13 C 1.39437 * 120.21245 * 92.81435 * 12 2 1 14 14 C 1.46783 * 134.31245 * 359.92876 * 13 12 2 15 15 C 1.33989 * 106.18816 * 180.02562 * 14 13 12 16 16 O 1.34435 * 110.15307 * 0.02562 * 15 14 13 17 17 C 1.34881 * 110.89007 * 359.97438 * 16 15 14 18 18 C 1.38918 * 133.37824 * 179.97438 * 17 16 15 19 19 C 1.37811 * 119.98847 * 180.02562 * 18 17 16 20 20 C 1.37919 * 120.20633 * 272.53344 * 12 2 1 21 21 F 1.35105 * 119.89026 * 0.02562 * 20 12 2 22 22 H 1.08998 * 109.47061 * 302.84584 * 1 2 3 23 23 H 1.09002 * 109.47093 * 62.84399 * 1 2 3 24 24 H 1.08993 * 109.46954 * 182.83736 * 1 2 3 25 25 H 1.08999 * 109.47067 * 198.88196 * 3 2 1 26 26 H 1.08998 * 109.47610 * 318.88670 * 3 2 1 27 27 H 1.08999 * 109.47156 * 78.89007 * 3 2 1 28 28 H 0.96998 * 120.00494 * 354.00765 * 7 6 4 29 29 H 1.08002 * 126.90522 * 0.02562 * 14 13 12 30 30 H 1.08005 * 124.92445 * 179.97438 * 15 14 13 31 31 H 1.07994 * 120.00589 * 0.04180 * 18 17 16 32 32 H 1.08001 * 119.66246 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 1.3343 -1.0459 1.9831 6 6 3.3831 -0.9322 1.3952 7 7 4.2381 -0.4720 0.5081 8 14 3.9995 -1.8796 2.8825 9 1 2.8457 -2.2801 3.7273 10 1 4.7269 -3.0925 2.4301 11 1 4.9158 -1.0188 3.6729 12 6 2.0324 -0.7103 -1.2305 13 6 2.3220 0.0112 -2.3880 14 6 2.2557 1.4309 -2.7549 15 6 2.6687 1.5076 -4.0273 16 8 2.9831 0.2839 -4.4867 17 6 2.7907 -0.6515 -3.5343 18 6 2.9619 -2.0298 -3.5021 19 6 2.6729 -2.7332 -2.3528 20 6 2.2140 -2.0774 -1.2170 21 9 1.9402 -2.7820 -0.0972 22 1 -0.3633 0.5574 0.8634 23 1 -0.3633 0.4691 -0.9144 24 1 -0.3633 -1.0263 0.0509 25 1 3.0778 1.4610 -0.3326 26 1 1.4311 2.0432 -0.6757 27 1 1.9744 1.8511 1.0084 28 1 3.9151 -0.0531 -0.3049 29 1 1.9380 2.2492 -2.1257 30 1 2.7380 2.4200 -4.6009 31 1 3.3216 -2.5498 -4.3776 32 1 2.8084 -3.8045 -2.3336 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260175767.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:55 Heat of formation + Delta-G solvation = -27.266208 kcal Electronic energy + Delta-G solvation = -18880.705864 eV Core-core repulsion = 15914.946015 eV Total energy + Delta-G solvation = -2965.759849 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.36176 -43.30133 -39.41655 -36.98165 -33.81513 -32.78610 -30.37839 -29.99465 -28.04952 -26.60697 -24.49471 -23.14874 -22.23674 -21.23092 -18.95613 -18.58461 -18.08986 -17.12226 -16.92647 -16.09449 -15.88659 -15.67518 -15.58037 -14.80368 -14.59811 -14.04579 -14.02422 -13.81539 -13.47779 -12.85595 -12.73879 -12.64355 -12.60562 -12.46663 -12.23154 -11.96978 -11.67942 -11.39463 -11.01630 -10.49096 -10.26866 -9.27782 -8.96153 -8.27551 -6.11857 0.02659 0.39006 1.49886 1.52318 1.57910 1.73022 1.93788 2.59434 2.71505 3.31002 3.55881 3.72578 3.84526 4.11383 4.24115 4.40214 4.48143 4.51334 4.57785 4.79924 4.84167 4.92864 4.99397 5.05039 5.10800 5.19880 5.23909 5.38231 5.54208 5.57286 5.76046 5.89830 6.22588 6.26689 6.38716 6.83547 7.60166 8.98520 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.025662 B = 0.010574 C = 0.009469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.847989 B = 2647.267325 C = 2956.335199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.065 3.935 3 C -0.119 4.119 4 C -0.582 4.582 5 H 0.036 0.964 6 C -0.008 4.008 7 N -0.939 5.939 8 Si 1.094 2.906 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.283 1.283 12 C -0.043 4.043 13 C -0.133 4.133 14 C -0.233 4.233 15 C 0.016 3.984 16 O -0.200 6.200 17 C 0.015 3.985 18 C -0.096 4.096 19 C -0.140 4.140 20 C 0.070 3.930 21 F -0.137 7.137 22 H 0.053 0.947 23 H 0.049 0.951 24 H 0.033 0.967 25 H 0.035 0.965 26 H 0.060 0.940 27 H 0.030 0.970 28 H 0.274 0.726 29 H 0.172 0.828 30 H 0.258 0.742 31 H 0.168 0.832 32 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.646 1.744 -9.464 10.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.065 3.935 3 C -0.177 4.177 4 C -0.621 4.621 5 H 0.054 0.946 6 C -0.208 4.208 7 N -0.579 5.579 8 Si 0.920 3.080 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.209 1.209 12 C -0.045 4.045 13 C -0.134 4.134 14 C -0.251 4.251 15 C -0.048 4.048 16 O -0.102 6.102 17 C -0.032 4.032 18 C -0.114 4.114 19 C -0.159 4.159 20 C 0.050 3.950 21 F -0.115 7.115 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.078 0.922 27 H 0.049 0.951 28 H 0.089 0.911 29 H 0.189 0.811 30 H 0.274 0.726 31 H 0.185 0.815 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.200 1.156 -8.896 9.237 hybrid contribution -1.308 0.326 0.046 1.349 sum -3.509 1.482 -8.850 9.635 Atomic orbital electron populations 1.21593 0.94920 0.99972 1.00249 1.17482 0.93164 0.92763 0.90135 1.22108 0.99580 0.96679 0.99290 1.22050 0.94470 1.40015 1.05523 0.94569 1.26486 0.93820 0.96438 1.04104 1.70775 1.37920 1.38273 1.10912 0.83216 0.75504 0.75723 0.73589 1.20305 1.21350 1.20879 1.20076 0.97213 0.92133 0.95077 1.19956 1.04324 0.95280 0.93817 1.23151 1.09638 0.94805 0.97547 1.24827 0.98210 0.86912 0.94838 1.83954 1.72233 1.15720 1.38322 1.19832 1.03911 0.91805 0.87647 1.19797 1.03943 0.88174 0.99518 1.21130 1.01880 1.01635 0.91207 1.17604 1.03758 0.90105 0.83489 1.91441 1.91382 1.78010 1.50709 0.92770 0.93214 0.94782 0.94637 0.92167 0.95092 0.91145 0.81125 0.72625 0.81453 0.82123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.70 8.31 71.98 0.60 -4.10 16 2 C 0.06 3.17 0.62 -53.67 -0.03 3.14 16 3 C -0.12 -5.43 6.60 71.98 0.47 -4.95 16 4 C -0.58 -32.33 5.70 25.60 0.15 -32.18 16 5 H 0.04 2.07 7.75 -2.91 -0.02 2.04 16 6 C -0.01 -0.45 4.09 84.65 0.35 -0.11 16 7 N -0.94 -56.18 12.84 21.45 0.28 -55.91 16 8 Si 1.09 52.63 29.90 68.60 2.05 54.68 16 9 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 10 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 12 C -0.04 -2.07 2.69 -19.65 -0.05 -2.12 16 13 C -0.13 -5.56 5.42 -20.21 -0.11 -5.67 16 14 C -0.23 -7.87 9.33 23.54 0.22 -7.65 16 15 C 0.02 0.42 11.96 66.85 0.80 1.22 16 16 O -0.20 -6.46 10.58 -9.53 -0.10 -6.56 16 17 C 0.01 0.57 7.41 22.97 0.17 0.74 16 18 C -0.10 -3.34 10.06 22.33 0.22 -3.11 16 19 C -0.14 -5.42 9.99 22.34 0.22 -5.19 16 20 C 0.07 3.33 6.43 22.37 0.14 3.48 16 21 F -0.14 -7.07 14.14 44.97 0.64 -6.43 16 22 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 23 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.03 1.75 5.32 -2.39 -0.01 1.74 16 26 H 0.06 2.27 5.46 -2.39 -0.01 2.26 16 27 H 0.03 1.43 7.99 -2.39 -0.02 1.41 16 28 H 0.27 16.16 3.79 -92.71 -0.35 15.81 16 29 H 0.17 5.30 5.32 -2.91 -0.02 5.29 16 30 H 0.26 3.57 8.06 -2.91 -0.02 3.55 16 31 H 0.17 4.33 8.06 -2.91 -0.02 4.31 16 32 H 0.16 5.12 8.06 -2.91 -0.02 5.10 16 Total: -1.00 -68.69 261.62 7.57 -61.12 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 1.56 Total: 9.62 kcal Atomic # 6 Polarization: -59.67 SS G_CDS: 3.15 Total: -56.52 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: 0.28 Total: -55.91 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.10 Total: -6.56 kcal Atomic # 9 Polarization: -7.07 SS G_CDS: 0.64 Total: -6.43 kcal Atomic # 14 Polarization: 52.63 SS G_CDS: 2.05 Total: 54.68 kcal Total: -68.69 7.57 -61.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260175767.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.857 kcal (2) G-P(sol) polarization free energy of solvation -68.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds