Wall clock time and date at job start Mon Mar 30 2020 06:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99580 * 2 1 4 4 H 1.48501 * 109.47081 * 270.00117 * 3 2 1 5 5 H 1.48502 * 109.47099 * 30.00079 * 3 2 1 6 6 H 1.48495 * 109.46998 * 150.00187 * 3 2 1 7 7 C 1.37875 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99787 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99901 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46677 * 180.02562 * 9 7 2 11 11 H 1.08994 * 110.61886 * 51.92057 * 10 9 7 12 12 C 1.54912 * 110.69039 * 175.00010 * 10 9 7 13 13 O 1.44784 * 101.72145 * 154.12965 * 12 10 9 14 14 C 1.43751 * 104.81601 * 323.89702 * 13 12 10 15 15 H 1.09000 * 109.63464 * 264.58198 * 14 13 12 16 16 C 1.53000 * 109.63690 * 144.18913 * 14 13 12 17 17 C 1.50703 * 109.46912 * 66.09441 * 16 14 13 18 18 C 1.38234 * 119.99770 * 269.72838 * 17 16 14 19 19 C 1.38239 * 119.99901 * 179.76875 * 18 17 16 20 20 C 1.38238 * 119.99492 * 0.48004 * 19 18 17 21 21 C 1.38225 * 120.00505 * 359.79428 * 20 19 18 22 22 C 1.38232 * 119.99860 * 90.00280 * 17 16 14 23 23 O 1.43365 * 108.66845 * 24.38387 * 14 13 12 24 24 H 0.96995 * 120.00200 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46961 * 60.00412 * 9 7 2 26 26 H 1.09001 * 109.46964 * 299.99694 * 9 7 2 27 27 H 1.09000 * 110.98266 * 36.02687 * 12 10 9 28 28 H 1.08998 * 110.97615 * 272.23595 * 12 10 9 29 29 H 1.09002 * 109.47398 * 186.09518 * 16 14 13 30 30 H 1.09001 * 109.47194 * 306.09699 * 16 14 13 31 31 H 1.08001 * 120.00330 * 359.97438 * 18 17 16 32 32 H 1.07993 * 120.00120 * 180.25541 * 19 18 17 33 33 H 1.08006 * 119.99203 * 179.76993 * 20 19 18 34 34 H 1.07998 * 120.00220 * 179.97438 * 21 20 19 35 35 H 1.07998 * 120.00407 * 0.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 1 2.9732 -3.5448 0.8025 12 6 1.5040 -5.0162 0.1258 13 8 2.4390 -5.9235 -0.5057 14 6 3.0142 -5.1668 -1.5842 15 1 2.4754 -5.3781 -2.5079 16 6 4.4871 -5.5460 -1.7501 17 6 4.5887 -6.9795 -2.2040 18 6 4.6772 -7.9953 -1.2706 19 6 4.7655 -9.3106 -1.6868 20 6 4.7754 -9.6092 -3.0365 21 6 4.6927 -8.5930 -3.9699 22 6 4.5991 -7.2781 -3.5536 23 8 2.9082 -3.7713 -1.2732 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6249 -2.5571 0.8897 27 1 0.5570 -4.9944 -0.4134 28 1 1.3499 -5.2806 1.1719 29 1 4.9481 -4.8959 -2.4938 30 1 5.0020 -5.4295 -0.7965 31 1 4.6739 -7.7617 -0.2162 32 1 4.8305 -10.1045 -0.9576 33 1 4.8482 -10.6366 -3.3616 34 1 4.7008 -8.8263 -5.0243 35 1 4.5349 -6.4841 -4.2829 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260188619.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:08 Heat of formation + Delta-G solvation = -78.688784 kcal Electronic energy + Delta-G solvation = -17510.341386 eV Core-core repulsion = 14665.811992 eV Total energy + Delta-G solvation = -2844.529394 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.01918 -38.97614 -34.60487 -33.66226 -32.85766 -30.87959 -30.65699 -27.93007 -26.35066 -23.22626 -22.88699 -22.52442 -20.87612 -20.55960 -17.14409 -16.46674 -16.27301 -15.97007 -15.55242 -15.01686 -14.71332 -14.46480 -13.77386 -13.39656 -13.32096 -13.05239 -12.69067 -12.22289 -12.14490 -11.95242 -11.73371 -11.43472 -11.17340 -11.00058 -10.93555 -10.55337 -10.49773 -9.74403 -9.64903 -9.17220 -9.02270 -8.91298 -8.53287 -8.40390 -6.02981 -4.04273 1.34703 1.41375 3.32980 3.38742 3.42658 3.76346 3.96083 4.44895 4.51486 4.86052 4.89964 5.00437 5.12326 5.26860 5.33421 5.35257 5.43107 5.51593 5.57720 5.60420 5.76874 5.84161 5.98782 6.04442 6.13930 6.21960 6.42880 6.46061 6.49869 6.68100 6.76102 7.01293 7.37111 7.56905 7.82651 7.94190 8.34579 8.99772 9.59154 11.08627 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.046536 B = 0.004301 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.546569 B = 6507.945822 C = 6788.944456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.064 3.936 11 H 0.072 0.928 12 C 0.016 3.984 13 O -0.386 6.386 14 C 0.236 3.764 15 H 0.074 0.926 16 C -0.095 4.095 17 C -0.072 4.072 18 C -0.100 4.100 19 C -0.123 4.123 20 C -0.129 4.129 21 C -0.123 4.123 22 C -0.118 4.118 23 O -0.367 6.367 24 H 0.261 0.739 25 H 0.027 0.973 26 H 0.034 0.966 27 H 0.072 0.928 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.786 -16.405 -4.016 18.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.551 4.551 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.007 3.993 11 H 0.090 0.910 12 C -0.060 4.060 13 O -0.307 6.307 14 C 0.140 3.860 15 H 0.091 0.909 16 C -0.133 4.133 17 C -0.072 4.072 18 C -0.118 4.118 19 C -0.141 4.141 20 C -0.147 4.147 21 C -0.141 4.141 22 C -0.136 4.136 23 O -0.288 6.288 24 H 0.071 0.929 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.091 0.909 28 H 0.119 0.881 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.759 -16.331 -4.081 18.535 hybrid contribution 0.253 0.911 0.000 0.946 sum 8.012 -15.420 -4.080 17.849 Atomic orbital electron populations 1.69949 1.06052 1.26750 1.50980 1.25001 0.94867 0.99336 0.95277 0.86537 0.79784 0.83198 0.78163 1.20621 1.21265 1.19840 1.21117 0.93185 0.90442 1.50339 0.92337 1.19275 0.93049 0.90800 0.98289 1.24042 0.94757 0.95797 0.84718 0.91014 1.24582 0.93521 0.88855 0.99071 1.89130 1.57444 1.37265 1.46820 1.23874 0.92561 0.78573 0.90963 0.90895 1.21057 0.96437 0.92546 1.03246 1.19759 0.98941 0.95158 0.93344 1.21094 0.98747 0.92310 0.99663 1.21133 1.00621 0.96464 0.95852 1.21103 1.01210 0.98979 0.93366 1.21093 1.00733 0.92894 0.99375 1.21114 1.00473 0.96719 0.95322 1.88942 1.80111 1.21160 1.38619 0.92932 0.95418 0.94759 0.90928 0.88116 0.89036 0.89928 0.85904 0.86299 0.86461 0.86288 0.86013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.53 9.04 -34.44 -0.31 -14.85 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 10 C 0.06 1.34 3.57 -25.72 -0.09 1.25 16 11 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 12 C 0.02 0.28 7.40 38.17 0.28 0.56 16 13 O -0.39 -6.72 10.92 -59.05 -0.65 -7.37 16 14 C 0.24 4.09 4.01 37.16 0.15 4.24 16 15 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 16 C -0.10 -1.39 5.44 -27.88 -0.15 -1.54 16 17 C -0.07 -0.96 4.98 -104.62 -0.52 -1.48 16 18 C -0.10 -1.28 9.46 -39.58 -0.37 -1.65 16 19 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 20 C -0.13 -1.35 10.05 -39.59 -0.40 -1.74 16 21 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 22 C -0.12 -1.43 9.70 -39.58 -0.38 -1.82 16 23 O -0.37 -7.83 10.83 -59.05 -0.64 -8.47 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.07 1.25 8.05 -51.93 -0.42 0.83 16 28 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 29 H 0.09 1.25 8.09 -51.93 -0.42 0.83 16 30 H 0.08 1.20 8.08 -51.93 -0.42 0.78 16 31 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 34 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 35 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 301.09 15.07 4.54 4.54 Total: -1.00 -30.98 301.09 -8.88 -39.87 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -5.03 Total: -0.78 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -2.83 Total: -18.57 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.74 Total: -25.99 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -1.28 Total: -15.84 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.98 -8.88 -39.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260188619.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.824 kcal (2) G-P(sol) polarization free energy of solvation -30.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds