Wall clock time and date at job start Mon Mar 30 2020 06:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76195 * 102.99875 * 2 1 4 4 C 1.38997 * 120.08358 * 359.97438 * 3 2 1 5 5 C 1.38054 * 119.91959 * 179.75233 * 4 3 2 6 6 C 1.38321 * 120.08228 * 0.25009 * 5 4 3 7 7 C 1.38279 * 120.16057 * 359.97438 * 6 5 4 8 8 C 1.38106 * 120.08142 * 0.04859 * 7 6 5 9 9 C 1.50700 * 120.03874 * 179.97438 * 8 7 6 10 10 H 1.09005 * 109.46716 * 180.02562 * 9 8 7 11 11 C 1.50693 * 109.47421 * 59.99789 * 9 8 7 12 12 H 1.08002 * 119.99966 * 275.49456 * 11 9 8 13 13 C 1.37881 * 120.00109 * 95.49217 * 11 9 8 14 14 N 1.31513 * 119.99863 * 5.43774 * 13 11 9 15 15 Si 1.86802 * 120.00141 * 185.43827 * 13 11 9 16 16 H 1.48501 * 109.47065 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47194 * 120.00099 * 15 13 11 18 18 H 1.48499 * 109.46946 * 239.99969 * 15 13 11 19 19 C 1.53002 * 109.47020 * 299.99422 * 9 8 7 20 20 C 1.52998 * 117.50150 * 245.94608 * 19 9 8 21 21 C 1.52999 * 117.49570 * 177.32335 * 19 9 8 22 22 H 1.09006 * 109.47084 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46942 * 300.00316 * 1 2 3 24 24 H 1.08997 * 109.46865 * 60.00514 * 1 2 3 25 25 H 1.07997 * 120.03705 * 0.02562 * 4 3 2 26 26 H 1.08002 * 119.95748 * 180.23197 * 5 4 3 27 27 H 1.08007 * 119.91989 * 180.02562 * 6 5 4 28 28 H 1.08007 * 119.95714 * 180.02562 * 7 6 5 29 29 H 0.97001 * 120.00250 * 180.02562 * 14 13 11 30 30 H 1.09003 * 115.54583 * 31.65677 * 19 9 8 31 31 H 1.09005 * 117.49746 * 359.97438 * 20 19 9 32 32 H 1.08997 * 117.50036 * 145.02462 * 20 19 9 33 33 H 1.09001 * 117.49437 * 214.98307 * 21 19 9 34 34 H 1.08998 * 117.50137 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1952 2.6662 -0.0005 5 6 1.5095 4.0105 0.0046 6 6 2.8329 4.4130 0.0051 7 6 3.8455 3.4714 0.0010 8 6 3.5386 2.1249 -0.0047 9 6 4.6430 1.0995 -0.0098 10 1 4.2099 0.0992 -0.0143 11 6 5.4952 1.2729 1.2208 12 1 6.2973 1.9962 1.2247 13 6 5.2511 0.5083 2.3419 14 7 4.3464 -0.4455 2.3030 15 14 6.2053 0.8269 3.9159 16 1 7.1569 1.9463 3.6998 17 1 5.2601 1.1845 5.0040 18 1 6.9570 -0.3963 4.2952 19 6 5.5066 1.2864 -1.2588 20 6 5.4943 0.1658 -2.3004 21 6 6.7259 0.3758 -1.4173 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 0.1617 2.3526 -0.0005 26 1 0.7212 4.7487 0.0080 27 1 3.0758 5.4654 0.0096 28 1 4.8777 3.7894 0.0018 29 1 4.1743 -0.9832 3.0918 30 1 5.5927 2.3106 -1.6219 31 1 4.8713 -0.7049 -2.0957 32 1 5.5722 0.4525 -3.3491 33 1 7.6140 0.8009 -1.8850 34 1 6.9130 -0.3560 -0.6315 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260194891.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:21 Heat of formation + Delta-G solvation = 40.621319 kcal Electronic energy + Delta-G solvation = -15988.011492 eV Core-core repulsion = 13591.408643 eV Total energy + Delta-G solvation = -2396.602849 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.53749 -36.41095 -32.92657 -30.98792 -30.46758 -28.25278 -26.98165 -23.65338 -22.05922 -21.41317 -21.04098 -18.97163 -16.80275 -16.31030 -15.32647 -14.66731 -14.52423 -14.14705 -13.63181 -13.41724 -13.33348 -13.04102 -12.33092 -12.09274 -11.89791 -11.67408 -11.30762 -10.98334 -10.64203 -10.61792 -10.51492 -10.37388 -9.88067 -9.50043 -9.38623 -8.95047 -8.83055 -8.66623 -8.35438 -7.82721 -6.37675 -5.96595 -4.00488 2.06024 2.26516 2.38904 3.29857 3.33134 3.40004 3.43273 4.42045 4.58709 4.87392 5.32346 5.48799 5.50669 5.53293 5.59849 5.76119 5.85613 5.96992 6.03368 6.03934 6.24284 6.40319 6.45457 6.54435 6.61495 6.84261 6.92050 7.02985 7.11885 7.13788 7.35896 7.46523 7.81298 7.86336 7.97753 8.38119 9.03957 9.59984 11.08230 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.015954 B = 0.010065 C = 0.009420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.664955 B = 2781.132900 C = 2971.777942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 S -0.052 6.052 3 C -0.093 4.093 4 C -0.143 4.143 5 C -0.136 4.136 6 C -0.135 4.135 7 C -0.103 4.103 8 C -0.001 4.001 9 C 0.087 3.913 10 H 0.084 0.916 11 C -0.504 4.504 12 H 0.057 0.943 13 C 0.070 3.930 14 N -0.866 5.866 15 Si 0.885 3.115 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.121 4.121 20 C -0.198 4.198 21 C -0.168 4.168 22 H 0.095 0.905 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.119 0.881 29 H 0.261 0.739 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.794 3.211 -5.534 7.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.343 4.343 2 S 0.191 5.809 3 C -0.206 4.206 4 C -0.167 4.167 5 C -0.156 4.156 6 C -0.156 4.156 7 C -0.123 4.123 8 C -0.007 4.007 9 C 0.068 3.932 10 H 0.102 0.898 11 C -0.542 4.542 12 H 0.075 0.925 13 C -0.135 4.135 14 N -0.502 5.502 15 Si 0.712 3.288 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.139 4.139 20 C -0.235 4.235 21 C -0.205 4.205 22 H 0.114 0.886 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.127 0.873 26 H 0.126 0.874 27 H 0.127 0.873 28 H 0.137 0.863 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.265 1.954 -5.414 7.164 hybrid contribution -0.482 1.465 1.104 1.897 sum -4.748 3.419 -4.310 7.267 Atomic orbital electron populations 1.23782 1.00705 1.05626 1.04159 1.86241 0.99770 1.02890 1.91952 1.21726 0.96411 0.96515 1.05972 1.20951 0.97361 0.93402 1.05029 1.20674 0.96108 0.94856 1.03953 1.21002 0.93083 0.98680 1.02836 1.20905 0.98726 0.92502 1.00166 1.20507 0.92953 0.95593 0.91608 1.17794 0.89585 0.94859 0.90952 0.89827 1.20843 1.15133 1.21569 0.96660 0.92494 1.24981 0.95119 0.94768 0.98597 1.69955 1.32122 1.19118 1.29025 0.86657 0.79949 0.78139 0.84007 1.19787 1.21121 1.21105 1.22475 1.00285 0.93587 0.97564 1.22987 1.03011 1.02258 0.95269 1.22712 0.91267 1.04451 1.02118 0.88585 0.90846 0.91198 0.87326 0.87413 0.87325 0.86328 0.92898 0.90044 0.89321 0.90696 0.90781 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 9.15 101.05 0.92 -1.72 16 2 S -0.05 -1.07 20.49 -107.50 -2.20 -3.27 16 3 C -0.09 -2.02 6.11 -39.03 -0.24 -2.26 16 4 C -0.14 -2.70 9.36 -39.37 -0.37 -3.07 16 5 C -0.14 -2.39 10.04 -39.62 -0.40 -2.78 16 6 C -0.14 -2.45 10.04 -39.54 -0.40 -2.84 16 7 C -0.10 -2.13 8.58 -39.61 -0.34 -2.47 16 8 C 0.00 -0.02 4.79 -104.40 -0.50 -0.52 16 9 C 0.09 2.09 2.17 -92.93 -0.20 1.89 16 10 H 0.08 2.19 4.85 -51.88 -0.25 1.93 16 11 C -0.50 -13.24 7.47 -34.44 -0.26 -13.50 16 12 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 13 C 0.07 1.87 5.45 -17.82 -0.10 1.77 16 14 N -0.87 -23.93 12.76 55.43 0.71 -23.22 16 15 Si 0.88 21.10 29.54 -169.99 -5.02 16.08 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 C -0.12 -2.55 5.07 -90.62 -0.46 -3.00 16 20 C -0.20 -3.75 10.18 -26.73 -0.27 -4.02 16 21 C -0.17 -3.31 9.81 -26.73 -0.26 -3.57 16 22 H 0.10 1.27 8.14 -51.92 -0.42 0.85 16 23 H 0.07 1.09 7.75 -51.92 -0.40 0.69 16 24 H 0.07 0.95 7.75 -51.93 -0.40 0.55 16 25 H 0.11 1.79 5.88 -52.49 -0.31 1.48 16 26 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 27 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 28 H 0.12 2.37 7.89 -52.48 -0.41 1.95 16 29 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.08 1.64 7.39 -51.93 -0.38 1.25 16 31 H 0.09 1.74 8.04 -51.93 -0.42 1.33 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.10 2.09 8.09 -51.93 -0.42 1.67 16 LS Contribution 296.64 15.07 4.47 4.47 Total: -1.00 -27.93 296.64 -9.57 -37.50 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -4.66 Total: 4.55 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: -2.87 Total: -36.11 kcal Atomic # 7 Polarization: -23.93 SS G_CDS: 0.71 Total: -23.22 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -1.07 SS G_CDS: -2.20 Total: -3.27 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.93 -9.57 -37.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260194891.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.124 kcal (2) G-P(sol) polarization free energy of solvation -27.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds