Wall clock time and date at job start Mon Mar 30 2020 06:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76198 * 102.99860 * 2 1 4 4 C 1.38997 * 120.08206 * 359.72753 * 3 2 1 5 5 C 1.38064 * 119.91595 * 179.69529 * 4 3 2 6 6 C 1.38319 * 120.08264 * 0.60220 * 5 4 3 7 7 C 1.38288 * 120.16104 * 359.67120 * 6 5 4 8 8 C 1.50701 * 119.95916 * 180.02562 * 7 6 5 9 9 H 1.08999 * 109.46525 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47212 * 60.02028 * 8 7 6 11 11 H 1.07995 * 120.00553 * 304.83237 * 10 8 7 12 12 C 1.37886 * 119.99760 * 124.83340 * 10 8 7 13 13 N 1.31509 * 120.00042 * 184.75338 * 12 10 8 14 14 Si 1.86801 * 119.99797 * 4.75221 * 12 10 8 15 15 H 1.48501 * 109.47161 * 84.58902 * 14 12 10 16 16 H 1.48502 * 109.46716 * 204.58846 * 14 12 10 17 17 H 1.48502 * 109.47146 * 324.58586 * 14 12 10 18 18 C 1.53004 * 109.46809 * 300.02112 * 8 7 6 19 19 C 1.52999 * 117.49688 * 243.97084 * 18 8 7 20 20 C 1.53004 * 117.49432 * 175.31325 * 18 8 7 21 21 C 1.38105 * 120.07675 * 0.02850 * 7 6 5 22 22 H 1.08998 * 109.47117 * 299.99992 * 1 2 3 23 23 H 1.09000 * 109.46858 * 59.99791 * 1 2 3 24 24 H 1.08996 * 109.46861 * 179.97438 * 1 2 3 25 25 H 1.07995 * 120.04165 * 359.97438 * 4 3 2 26 26 H 1.08004 * 119.95409 * 180.27235 * 5 4 3 27 27 H 1.07995 * 119.92452 * 179.69698 * 6 5 4 28 28 H 0.96999 * 120.00146 * 180.02562 * 13 12 10 29 29 H 1.08999 * 115.55301 * 29.64776 * 18 8 7 30 30 H 1.08999 * 117.50069 * 0.02562 * 19 18 8 31 31 H 1.09002 * 117.49361 * 145.02252 * 19 18 8 32 32 H 1.08992 * 117.49845 * 214.97952 * 20 18 8 33 33 H 1.09001 * 117.50311 * 359.97438 * 20 18 8 34 34 H 1.08001 * 120.03604 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1952 2.6662 -0.0057 5 6 1.5096 4.0106 0.0007 6 6 2.8329 4.4131 0.0002 7 6 3.8456 3.4714 0.0001 8 6 5.2858 3.9151 0.0001 9 1 5.9355 3.0399 -0.0003 10 6 5.5569 4.7414 1.2309 11 1 4.9507 5.6098 1.4426 12 6 6.5788 4.3888 2.0867 13 7 6.7565 5.0530 3.2077 14 14 7.7111 2.9675 1.6537 15 1 8.7998 3.4538 0.7685 16 1 8.2976 2.4055 2.8968 17 1 6.9359 1.9132 0.9516 18 6 5.5607 4.7551 -1.2488 19 6 6.5643 4.2042 -2.2638 20 6 6.9445 5.3945 -1.3796 21 6 3.5386 2.1249 0.0000 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 0.1617 2.3527 -0.0106 26 1 0.7212 4.7488 0.0007 27 1 3.0759 5.4654 0.0002 28 1 7.4756 4.8051 3.8096 29 1 4.7091 5.3146 -1.6359 30 1 7.0284 3.2432 -2.0420 31 1 6.3731 4.4016 -3.3186 32 1 7.0034 6.3744 -1.8530 33 1 7.6589 5.2171 -0.5757 34 1 4.3301 1.3900 0.0004 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260207475.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:26 Heat of formation + Delta-G solvation = 40.264884 kcal Electronic energy + Delta-G solvation = -15616.665146 eV Core-core repulsion = 13220.046840 eV Total energy + Delta-G solvation = -2396.618305 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.83925 -36.63772 -32.90703 -31.54529 -30.43094 -29.17731 -27.33000 -23.52550 -22.44085 -21.51794 -21.18184 -19.13115 -17.02799 -16.90523 -15.83331 -14.83939 -14.62890 -14.40094 -14.03760 -13.76827 -13.39768 -13.30694 -12.75335 -12.44913 -12.29593 -12.05086 -11.67952 -11.10272 -11.05191 -10.63723 -10.55569 -10.55159 -10.00457 -9.77906 -9.70592 -9.29085 -9.15701 -8.80885 -8.55730 -8.00553 -7.08263 -6.14190 -4.12323 1.74344 1.80774 1.98834 2.63157 3.23601 3.30910 3.33101 4.31874 4.35403 4.69002 5.03643 5.04956 5.18305 5.29916 5.39263 5.52776 5.62155 5.76879 5.82638 5.97920 6.00567 6.14648 6.20901 6.29280 6.42266 6.62854 6.66515 6.76688 6.86492 6.90810 7.04191 7.20436 7.44191 7.56608 7.66153 8.44476 8.90881 9.47087 10.98599 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.022387 B = 0.007262 C = 0.006764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.437019 B = 3854.926180 C = 4138.871077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.141 6.141 3 C -0.083 4.083 4 C -0.159 4.159 5 C -0.106 4.106 6 C -0.109 4.109 7 C -0.006 4.006 8 C 0.061 3.939 9 H 0.052 0.948 10 C -0.493 4.493 11 H 0.078 0.922 12 C 0.075 3.925 13 N -0.894 5.894 14 Si 0.866 3.134 15 H -0.271 1.271 16 H -0.288 1.288 17 H -0.263 1.263 18 C -0.120 4.120 19 C -0.206 4.206 20 C -0.166 4.166 21 C -0.110 4.110 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.101 0.899 25 H 0.112 0.888 26 H 0.116 0.884 27 H 0.123 0.877 28 H 0.265 0.735 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.077 -5.936 -8.154 13.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.100 5.900 3 C -0.195 4.195 4 C -0.182 4.182 5 C -0.126 4.126 6 C -0.129 4.129 7 C -0.008 4.008 8 C 0.042 3.958 9 H 0.070 0.930 10 C -0.530 4.530 11 H 0.096 0.904 12 C -0.127 4.127 13 N -0.531 5.531 14 Si 0.694 3.306 15 H -0.197 1.197 16 H -0.214 1.214 17 H -0.188 1.188 18 C -0.138 4.138 19 C -0.243 4.243 20 C -0.203 4.203 21 C -0.133 4.133 22 H 0.100 0.900 23 H 0.099 0.901 24 H 0.120 0.880 25 H 0.130 0.870 26 H 0.134 0.866 27 H 0.141 0.859 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.316 -6.975 -7.963 13.462 hybrid contribution -0.185 0.413 -0.001 0.452 sum -8.502 -6.562 -7.964 13.370 Atomic orbital electron populations 1.23572 0.95474 1.06350 1.05408 1.85335 1.05713 1.05387 1.93593 1.21486 0.96816 0.94936 1.06265 1.20852 0.97159 0.93354 1.06848 1.20943 0.96602 0.94801 1.00271 1.21049 0.91705 1.00065 1.00071 1.20401 0.97765 0.91426 0.91233 1.18163 0.88619 0.95637 0.93380 0.92970 1.20777 1.16147 1.11804 1.04271 0.90386 1.25040 0.97122 0.96058 0.94490 1.69875 1.31820 1.41172 1.10271 0.87045 0.81640 0.83786 0.78102 1.19709 1.21433 1.18839 1.22575 0.92331 1.01962 0.96968 1.23057 1.06843 0.98473 0.95962 1.22762 1.00438 0.95428 1.01647 1.20663 0.93524 0.96129 1.03026 0.89986 0.90081 0.87998 0.86990 0.86642 0.85865 0.92501 0.89278 0.89956 0.90200 0.90155 0.88656 0.86467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.15 101.05 0.92 -0.52 16 2 S -0.14 -2.10 22.56 -107.50 -2.43 -4.53 16 3 C -0.08 -1.47 6.11 -39.04 -0.24 -1.71 16 4 C -0.16 -2.56 9.36 -39.36 -0.37 -2.93 16 5 C -0.11 -1.76 10.04 -39.62 -0.40 -2.16 16 6 C -0.11 -2.09 8.52 -39.53 -0.34 -2.43 16 7 C -0.01 -0.13 4.77 -104.65 -0.50 -0.62 16 8 C 0.06 1.38 2.08 -92.92 -0.19 1.19 16 9 H 0.05 1.23 3.94 -51.93 -0.20 1.02 16 10 C -0.49 -13.09 7.94 -34.44 -0.27 -13.36 16 11 H 0.08 2.25 7.89 -52.49 -0.41 1.84 16 12 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 13 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 14 Si 0.87 21.04 26.76 -169.99 -4.55 16.49 16 15 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 17 H -0.26 -6.16 6.21 56.52 0.35 -5.81 16 18 C -0.12 -2.40 5.09 -90.62 -0.46 -2.86 16 19 C -0.21 -3.70 10.18 -26.69 -0.27 -3.97 16 20 C -0.17 -3.23 9.78 -26.69 -0.26 -3.49 16 21 C -0.11 -2.21 9.42 -39.37 -0.37 -2.58 16 22 H 0.08 0.82 7.76 -51.93 -0.40 0.42 16 23 H 0.08 0.77 7.74 -51.92 -0.40 0.37 16 24 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.11 1.48 5.88 -52.49 -0.31 1.17 16 26 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 27 H 0.12 2.32 7.80 -52.49 -0.41 1.92 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.09 1.68 7.39 -51.93 -0.38 1.29 16 30 H 0.08 1.49 8.03 -51.93 -0.42 1.07 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 33 H 0.10 2.07 7.38 -51.93 -0.38 1.69 16 34 H 0.12 2.35 7.94 -52.49 -0.42 1.93 16 LS Contribution 294.17 15.07 4.43 4.43 Total: -1.00 -28.89 294.17 -9.23 -38.12 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -4.62 Total: 4.73 kcal Atomic # 6 Polarization: -30.61 SS G_CDS: -2.85 Total: -33.46 kcal Atomic # 7 Polarization: -26.56 SS G_CDS: 0.77 Total: -25.79 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.55 Total: 16.49 kcal Atomic # 16 Polarization: -2.10 SS G_CDS: -2.43 Total: -4.53 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.89 -9.23 -38.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260207475.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.386 kcal (2) G-P(sol) polarization free energy of solvation -28.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds