Wall clock time and date at job start Mon Mar 30 2020 06:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76198 * 102.99860 * 2 1 4 4 C 1.38997 * 120.08206 * 359.72753 * 3 2 1 5 5 C 1.38064 * 119.91595 * 179.69529 * 4 3 2 6 6 C 1.38319 * 120.08264 * 0.60220 * 5 4 3 7 7 C 1.38288 * 120.16104 * 359.67120 * 6 5 4 8 8 C 1.50701 * 119.95916 * 180.02562 * 7 6 5 9 9 H 1.08999 * 109.46525 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47212 * 60.02028 * 8 7 6 11 11 H 1.07995 * 120.00553 * 304.83237 * 10 8 7 12 12 C 1.37886 * 119.99760 * 124.83340 * 10 8 7 13 13 N 1.31509 * 120.00042 * 184.75338 * 12 10 8 14 14 Si 1.86801 * 119.99797 * 4.75221 * 12 10 8 15 15 H 1.48501 * 109.47161 * 84.58902 * 14 12 10 16 16 H 1.48502 * 109.46716 * 204.58846 * 14 12 10 17 17 H 1.48502 * 109.47146 * 324.58586 * 14 12 10 18 18 C 1.53004 * 109.46809 * 300.02112 * 8 7 6 19 19 C 1.52999 * 117.49688 * 243.97084 * 18 8 7 20 20 C 1.53004 * 117.49432 * 175.31325 * 18 8 7 21 21 C 1.38105 * 120.07675 * 0.02850 * 7 6 5 22 22 H 1.08998 * 109.47117 * 299.99992 * 1 2 3 23 23 H 1.09000 * 109.46858 * 59.99791 * 1 2 3 24 24 H 1.08996 * 109.46861 * 179.97438 * 1 2 3 25 25 H 1.07995 * 120.04165 * 359.97438 * 4 3 2 26 26 H 1.08004 * 119.95409 * 180.27235 * 5 4 3 27 27 H 1.07995 * 119.92452 * 179.69698 * 6 5 4 28 28 H 0.96999 * 120.00146 * 180.02562 * 13 12 10 29 29 H 1.08999 * 115.55301 * 29.64776 * 18 8 7 30 30 H 1.08999 * 117.50069 * 0.02562 * 19 18 8 31 31 H 1.09002 * 117.49361 * 145.02252 * 19 18 8 32 32 H 1.08992 * 117.49845 * 214.97952 * 20 18 8 33 33 H 1.09001 * 117.50311 * 359.97438 * 20 18 8 34 34 H 1.08001 * 120.03604 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1952 2.6662 -0.0057 5 6 1.5096 4.0106 0.0007 6 6 2.8329 4.4131 0.0002 7 6 3.8456 3.4714 0.0001 8 6 5.2858 3.9151 0.0001 9 1 5.9355 3.0399 -0.0003 10 6 5.5569 4.7414 1.2309 11 1 4.9507 5.6098 1.4426 12 6 6.5788 4.3888 2.0867 13 7 6.7565 5.0530 3.2077 14 14 7.7111 2.9675 1.6537 15 1 8.7998 3.4538 0.7685 16 1 8.2976 2.4055 2.8968 17 1 6.9359 1.9132 0.9516 18 6 5.5607 4.7551 -1.2488 19 6 6.5643 4.2042 -2.2638 20 6 6.9445 5.3945 -1.3796 21 6 3.5386 2.1249 0.0000 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 0.1617 2.3527 -0.0106 26 1 0.7212 4.7488 0.0007 27 1 3.0759 5.4654 0.0002 28 1 7.4756 4.8051 3.8096 29 1 4.7091 5.3146 -1.6359 30 1 7.0284 3.2432 -2.0420 31 1 6.3731 4.4016 -3.3186 32 1 7.0034 6.3744 -1.8530 33 1 7.6589 5.2171 -0.5757 34 1 4.3301 1.3900 0.0004 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260207475.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:26 Heat of formation + Delta-G solvation = 25.810645 kcal Electronic energy + Delta-G solvation = -15617.291928 eV Core-core repulsion = 13220.046840 eV Total energy + Delta-G solvation = -2397.245088 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.31537 -38.17464 -34.82216 -33.22101 -31.82247 -30.23436 -28.88170 -25.37708 -23.86402 -23.01085 -22.62287 -20.77349 -19.05857 -18.28319 -17.13125 -16.42156 -16.26433 -16.03893 -15.26410 -15.04678 -14.72543 -14.57678 -14.48714 -13.88286 -13.72971 -13.47451 -13.17613 -12.90553 -12.44128 -12.30601 -12.20193 -12.03816 -11.77981 -11.44362 -11.12524 -10.96043 -10.71355 -10.50886 -10.37630 -9.51151 -8.31537 -8.28500 -6.28944 0.38985 0.57015 0.63664 1.28732 1.30213 1.37257 1.55937 2.30413 2.85664 3.05569 3.23041 3.87156 4.05925 4.15576 4.24700 4.29437 4.30751 4.32668 4.47946 4.60932 4.64878 4.70515 4.84372 4.88027 4.90524 5.11851 5.20183 5.23922 5.36797 5.40361 5.51846 5.57554 5.67863 5.90409 6.12093 6.34717 6.74970 7.33320 8.87566 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.022387 B = 0.007262 C = 0.006764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.437019 B = 3854.926180 C = 4138.871077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.166 6.166 3 C -0.088 4.088 4 C -0.151 4.151 5 C -0.099 4.099 6 C -0.127 4.127 7 C -0.032 4.032 8 C 0.063 3.937 9 H 0.041 0.959 10 C -0.481 4.481 11 H 0.041 0.959 12 C 0.020 3.980 13 N -0.946 5.946 14 Si 0.919 3.081 15 H -0.259 1.259 16 H -0.291 1.291 17 H -0.252 1.252 18 C -0.136 4.136 19 C -0.181 4.181 20 C -0.176 4.176 21 C -0.133 4.133 22 H 0.090 0.910 23 H 0.096 0.904 24 H 0.127 0.873 25 H 0.150 0.850 26 H 0.151 0.849 27 H 0.116 0.884 28 H 0.264 0.736 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.067 0.933 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.248 -7.338 -10.086 16.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S 0.074 5.926 3 C -0.200 4.200 4 C -0.174 4.174 5 C -0.118 4.118 6 C -0.147 4.147 7 C -0.034 4.034 8 C 0.044 3.956 9 H 0.059 0.941 10 C -0.519 4.519 11 H 0.060 0.940 12 C -0.177 4.177 13 N -0.586 5.586 14 Si 0.744 3.256 15 H -0.184 1.184 16 H -0.217 1.217 17 H -0.176 1.176 18 C -0.155 4.155 19 C -0.217 4.217 20 C -0.213 4.213 21 C -0.156 4.156 22 H 0.109 0.891 23 H 0.115 0.885 24 H 0.146 0.854 25 H 0.167 0.833 26 H 0.168 0.832 27 H 0.134 0.866 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.098 0.902 31 H 0.131 0.869 32 H 0.121 0.879 33 H 0.085 0.915 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.494 -8.391 -9.924 16.704 hybrid contribution 0.288 0.827 0.564 1.042 sum -10.206 -7.564 -9.360 15.779 Atomic orbital electron populations 1.23739 0.90940 1.08484 1.06572 1.85454 1.10646 1.03268 1.93208 1.21722 0.96221 0.97072 1.04952 1.21306 0.98605 0.92759 1.04777 1.21315 0.96140 0.96064 0.98300 1.21099 0.92874 0.99422 1.01331 1.20261 0.97029 0.92488 0.93639 1.18028 0.90016 0.94745 0.92765 0.94096 1.20950 1.14679 1.10786 1.05461 0.94034 1.25740 0.98864 0.98631 0.94455 1.70013 1.33164 1.43568 1.11850 0.86187 0.80194 0.81278 0.77913 1.18384 1.21748 1.17630 1.22456 0.93199 1.02775 0.97056 1.23126 1.04019 0.97509 0.97085 1.22773 0.99266 0.97458 1.01820 1.20657 0.94789 0.95494 1.04682 0.89059 0.88549 0.85435 0.83251 0.83158 0.86635 0.92686 0.88171 0.90170 0.86865 0.87944 0.91464 0.87584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 9.15 113.37 1.04 -1.06 16 2 S -0.17 -4.58 22.56 -56.49 -1.27 -5.85 16 3 C -0.09 -2.95 6.11 22.62 0.14 -2.81 16 4 C -0.15 -4.39 9.36 22.41 0.21 -4.18 16 5 C -0.10 -3.03 10.04 22.25 0.22 -2.80 16 6 C -0.13 -4.84 8.52 22.30 0.19 -4.65 16 7 C -0.03 -1.36 4.77 -19.88 -0.09 -1.46 16 8 C 0.06 2.93 2.08 -12.29 -0.03 2.90 16 9 H 0.04 1.95 3.94 -2.39 -0.01 1.94 16 10 C -0.48 -26.66 7.94 25.60 0.20 -26.46 16 11 H 0.04 2.54 7.89 -2.91 -0.02 2.52 16 12 C 0.02 1.16 5.47 84.66 0.46 1.63 16 13 N -0.95 -58.79 13.96 21.45 0.30 -58.49 16 14 Si 0.92 44.57 26.76 68.60 1.84 46.41 16 15 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 16 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 17 H -0.25 -11.62 6.21 99.48 0.62 -11.00 16 18 C -0.14 -5.42 5.09 -10.79 -0.05 -5.48 16 19 C -0.18 -6.11 10.18 30.62 0.31 -5.80 16 20 C -0.18 -6.76 9.78 30.62 0.30 -6.46 16 21 C -0.13 -5.33 9.42 22.41 0.21 -5.12 16 22 H 0.09 1.38 7.76 -2.39 -0.02 1.36 16 23 H 0.10 1.34 7.74 -2.39 -0.02 1.32 16 24 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.15 3.18 5.88 -2.91 -0.02 3.16 16 26 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 27 H 0.12 4.46 7.80 -2.91 -0.02 4.44 16 28 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 29 H 0.10 3.72 7.39 -2.39 -0.02 3.70 16 30 H 0.08 2.76 8.03 -2.39 -0.02 2.74 16 31 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 32 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 33 H 0.07 2.96 7.38 -2.39 -0.02 2.94 16 34 H 0.11 4.35 7.94 -2.91 -0.02 4.32 16 Total: -1.00 -65.66 294.17 4.96 -60.69 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.99 Total: 18.98 kcal Atomic # 6 Polarization: -64.86 SS G_CDS: 3.11 Total: -61.75 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: 0.30 Total: -58.49 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.84 Total: 46.41 kcal Atomic # 16 Polarization: -4.58 SS G_CDS: -1.27 Total: -5.85 kcal Total: -65.66 4.96 -60.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260207475.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.505 kcal (2) G-P(sol) polarization free energy of solvation -65.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds