Wall clock time and date at job start Mon Mar 30 2020 06:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76195 * 103.00104 * 2 1 4 4 C 1.38996 * 120.08356 * 359.97438 * 3 2 1 5 5 C 1.38060 * 119.92415 * 180.02562 * 4 3 2 6 6 C 1.38324 * 120.07535 * 359.97438 * 5 4 3 7 7 C 1.38280 * 120.16437 * 0.27601 * 6 5 4 8 8 C 1.50702 * 119.95898 * 179.70242 * 7 6 5 9 9 H 1.08997 * 109.46817 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.47081 * 299.99888 * 8 7 6 11 11 H 1.08006 * 119.99486 * 85.08128 * 10 8 7 12 12 C 1.37873 * 120.00450 * 265.08387 * 10 8 7 13 13 N 1.31517 * 120.00052 * 184.98630 * 12 10 8 14 14 Si 1.86798 * 119.99719 * 4.97670 * 12 10 8 15 15 H 1.48506 * 109.47132 * 84.72240 * 14 12 10 16 16 H 1.48499 * 109.47230 * 204.71969 * 14 12 10 17 17 H 1.48497 * 109.47457 * 324.72098 * 14 12 10 18 18 C 1.52991 * 109.47314 * 60.00222 * 8 7 6 19 19 C 1.53005 * 117.50141 * 133.78935 * 18 8 7 20 20 C 1.53004 * 60.00001 * 252.51161 * 19 18 8 21 21 C 1.38100 * 120.07969 * 359.45219 * 7 6 5 22 22 H 1.08998 * 109.46718 * 59.99856 * 1 2 3 23 23 H 1.08991 * 109.46861 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46838 * 300.00204 * 1 2 3 25 25 H 1.08001 * 120.03401 * 0.04599 * 4 3 2 26 26 H 1.07994 * 119.96161 * 179.97438 * 5 4 3 27 27 H 1.08001 * 119.91290 * 180.02562 * 6 5 4 28 28 H 0.96998 * 119.99840 * 179.97438 * 13 12 10 29 29 H 1.09001 * 115.55037 * 279.50554 * 18 8 7 30 30 H 1.09001 * 117.49248 * 0.02562 * 19 18 8 31 31 H 1.08998 * 117.49386 * 145.01861 * 19 18 8 32 32 H 1.08996 * 117.49979 * 252.50923 * 20 19 18 33 33 H 1.08996 * 117.51505 * 107.47871 * 20 19 18 34 34 H 1.07995 * 120.04270 * 180.27628 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1953 2.6662 -0.0005 5 6 1.5096 4.0106 -0.0011 6 6 2.8330 4.4130 -0.0005 7 6 3.8456 3.4714 -0.0052 8 6 5.2859 3.9150 -0.0114 9 1 5.9355 3.0399 -0.0149 10 6 5.5514 4.7422 -1.2429 11 1 5.3347 5.8003 -1.2397 12 6 6.0709 4.1483 -2.3735 13 7 6.3944 4.8851 -3.4138 14 14 6.3156 2.2972 -2.4276 15 1 5.0460 1.6417 -2.8324 16 1 7.3785 1.9669 -3.4106 17 1 6.7166 1.8113 -1.0829 18 6 5.5664 4.7540 1.2368 19 6 6.8390 4.4416 2.0267 20 6 5.4719 4.0544 2.5942 21 6 3.5388 2.1249 0.0010 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.1618 2.3526 -0.0002 26 1 0.7214 4.7488 -0.0019 27 1 3.0759 5.4654 -0.0005 28 1 6.7602 4.4673 -4.2090 29 1 5.2492 5.7955 1.1843 30 1 7.4765 3.6386 1.6568 31 1 7.3594 5.2777 2.4938 32 1 5.0929 4.6357 3.4347 33 1 5.2095 2.9965 2.5979 34 1 4.3301 1.3900 0.0018 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260207484.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:29 Heat of formation + Delta-G solvation = 39.416160 kcal Electronic energy + Delta-G solvation = -15741.298679 eV Core-core repulsion = 13344.643571 eV Total energy + Delta-G solvation = -2396.655109 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.86597 -36.62343 -33.05510 -31.42094 -30.40423 -29.18334 -27.41213 -23.32560 -22.42190 -21.74730 -21.23086 -19.20572 -17.07238 -16.71880 -15.82988 -14.96711 -14.69117 -14.28807 -13.97126 -13.75656 -13.48239 -13.32831 -12.75169 -12.37937 -12.32294 -12.21426 -11.50269 -11.05009 -10.97948 -10.92802 -10.66200 -10.51242 -10.02615 -9.84344 -9.58871 -9.21480 -9.10711 -9.02521 -8.60608 -8.00435 -7.06565 -6.15095 -4.14397 1.75508 1.84135 2.01496 2.64492 3.27869 3.33216 3.37869 4.34297 4.39048 4.54605 5.04514 5.05861 5.17213 5.33557 5.39800 5.49035 5.61752 5.69927 5.72133 5.93033 6.02158 6.12971 6.18122 6.30519 6.35041 6.57546 6.67416 6.70711 6.75394 6.85563 7.09097 7.14285 7.48208 7.58613 7.66979 8.43142 8.88362 9.46515 10.97165 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.018688 B = 0.008803 C = 0.007481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.929563 B = 3180.097667 C = 3742.071190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.144 6.144 3 C -0.082 4.082 4 C -0.159 4.159 5 C -0.107 4.107 6 C -0.100 4.100 7 C -0.011 4.011 8 C 0.062 3.938 9 H 0.051 0.949 10 C -0.499 4.499 11 H 0.078 0.922 12 C 0.078 3.922 13 N -0.893 5.893 14 Si 0.863 3.137 15 H -0.268 1.268 16 H -0.288 1.288 17 H -0.262 1.262 18 C -0.106 4.106 19 C -0.181 4.181 20 C -0.199 4.199 21 C -0.118 4.118 22 H 0.081 0.919 23 H 0.101 0.899 24 H 0.081 0.919 25 H 0.112 0.888 26 H 0.115 0.885 27 H 0.123 0.877 28 H 0.265 0.735 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.040 -5.939 8.590 13.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.096 5.904 3 C -0.194 4.194 4 C -0.183 4.183 5 C -0.127 4.127 6 C -0.120 4.120 7 C -0.014 4.014 8 C 0.043 3.957 9 H 0.069 0.931 10 C -0.536 4.536 11 H 0.096 0.904 12 C -0.125 4.125 13 N -0.530 5.530 14 Si 0.690 3.310 15 H -0.193 1.193 16 H -0.214 1.214 17 H -0.187 1.187 18 C -0.125 4.125 19 C -0.218 4.218 20 C -0.236 4.236 21 C -0.141 4.141 22 H 0.100 0.900 23 H 0.120 0.880 24 H 0.099 0.901 25 H 0.130 0.870 26 H 0.133 0.867 27 H 0.141 0.859 28 H 0.075 0.925 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.322 -6.999 8.378 13.727 hybrid contribution -0.726 0.115 -0.321 0.803 sum -9.048 -6.884 8.057 13.935 Atomic orbital electron populations 1.23563 0.95384 1.06333 1.05413 1.85323 1.05830 1.05597 1.93630 1.21467 0.96819 0.94832 1.06311 1.20837 0.97095 0.93370 1.06973 1.20952 0.96672 0.94751 1.00322 1.20995 0.91553 1.00039 0.99444 1.20671 0.98497 0.91226 0.90963 1.18145 0.88065 0.96016 0.93507 0.93116 1.20818 1.41971 0.96226 0.94572 0.90377 1.25005 0.94365 0.97641 0.95530 1.69882 1.42754 1.35513 1.04887 0.87082 0.78809 0.86855 0.78211 1.19327 1.21366 1.18699 1.22313 0.99716 0.99576 0.90874 1.22854 0.91012 1.03001 1.04943 1.22925 1.01348 1.00993 0.98314 1.20650 0.93506 0.96168 1.03797 0.90001 0.88007 0.90051 0.87023 0.86656 0.85916 0.92475 0.88565 0.89441 0.89757 0.90000 0.89644 0.86876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.15 101.05 0.92 -0.57 16 2 S -0.14 -2.24 22.56 -107.50 -2.43 -4.67 16 3 C -0.08 -1.51 6.11 -39.03 -0.24 -1.75 16 4 C -0.16 -2.65 9.36 -39.37 -0.37 -3.02 16 5 C -0.11 -1.82 10.04 -39.61 -0.40 -2.22 16 6 C -0.10 -1.96 8.92 -39.53 -0.35 -2.31 16 7 C -0.01 -0.24 4.35 -104.66 -0.46 -0.69 16 8 C 0.06 1.40 1.67 -92.92 -0.15 1.24 16 9 H 0.05 1.20 4.67 -51.93 -0.24 0.96 16 10 C -0.50 -13.38 8.48 -34.44 -0.29 -13.67 16 11 H 0.08 2.25 8.06 -52.48 -0.42 1.83 16 12 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 13 N -0.89 -26.77 13.96 55.43 0.77 -26.00 16 14 Si 0.86 21.49 26.69 -169.99 -4.54 16.96 16 15 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 17 H -0.26 -6.17 6.06 56.52 0.34 -5.83 16 18 C -0.11 -2.09 4.70 -90.62 -0.43 -2.52 16 19 C -0.18 -3.18 10.18 -26.73 -0.27 -3.46 16 20 C -0.20 -3.35 10.01 -26.73 -0.27 -3.62 16 21 C -0.12 -2.43 8.83 -39.36 -0.35 -2.78 16 22 H 0.08 0.86 7.75 -51.92 -0.40 0.46 16 23 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.08 0.80 7.75 -51.92 -0.40 0.40 16 25 H 0.11 1.53 5.88 -52.49 -0.31 1.22 16 26 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 27 H 0.12 2.34 8.05 -52.49 -0.42 1.92 16 28 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.10 1.88 8.14 -51.93 -0.42 1.45 16 30 H 0.09 1.57 8.08 -51.93 -0.42 1.15 16 31 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.11 2.34 7.79 -52.49 -0.41 1.94 16 LS Contribution 295.86 15.07 4.46 4.46 Total: -1.00 -29.31 295.86 -9.24 -38.55 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -4.76 Total: 3.97 kcal Atomic # 6 Polarization: -30.52 SS G_CDS: -2.75 Total: -33.27 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.77 Total: -26.00 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.54 Total: 16.96 kcal Atomic # 16 Polarization: -2.24 SS G_CDS: -2.43 Total: -4.67 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.31 -9.24 -38.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260207484.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.962 kcal (2) G-P(sol) polarization free energy of solvation -29.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds