Wall clock time and date at job start Mon Mar 30 2020 06:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76195 * 103.00104 * 2 1 4 4 C 1.38996 * 120.08356 * 359.97438 * 3 2 1 5 5 C 1.38060 * 119.92415 * 180.02562 * 4 3 2 6 6 C 1.38324 * 120.07535 * 359.97438 * 5 4 3 7 7 C 1.38280 * 120.16437 * 0.27601 * 6 5 4 8 8 C 1.50702 * 119.95898 * 179.70242 * 7 6 5 9 9 H 1.08997 * 109.46817 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.47081 * 299.99888 * 8 7 6 11 11 H 1.08006 * 119.99486 * 85.08128 * 10 8 7 12 12 C 1.37873 * 120.00450 * 265.08387 * 10 8 7 13 13 N 1.31517 * 120.00052 * 184.98630 * 12 10 8 14 14 Si 1.86798 * 119.99719 * 4.97670 * 12 10 8 15 15 H 1.48506 * 109.47132 * 84.72240 * 14 12 10 16 16 H 1.48499 * 109.47230 * 204.71969 * 14 12 10 17 17 H 1.48497 * 109.47457 * 324.72098 * 14 12 10 18 18 C 1.52991 * 109.47314 * 60.00222 * 8 7 6 19 19 C 1.53005 * 117.50141 * 133.78935 * 18 8 7 20 20 C 1.53004 * 60.00001 * 252.51161 * 19 18 8 21 21 C 1.38100 * 120.07969 * 359.45219 * 7 6 5 22 22 H 1.08998 * 109.46718 * 59.99856 * 1 2 3 23 23 H 1.08991 * 109.46861 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46838 * 300.00204 * 1 2 3 25 25 H 1.08001 * 120.03401 * 0.04599 * 4 3 2 26 26 H 1.07994 * 119.96161 * 179.97438 * 5 4 3 27 27 H 1.08001 * 119.91290 * 180.02562 * 6 5 4 28 28 H 0.96998 * 119.99840 * 179.97438 * 13 12 10 29 29 H 1.09001 * 115.55037 * 279.50554 * 18 8 7 30 30 H 1.09001 * 117.49248 * 0.02562 * 19 18 8 31 31 H 1.08998 * 117.49386 * 145.01861 * 19 18 8 32 32 H 1.08996 * 117.49979 * 252.50923 * 20 19 18 33 33 H 1.08996 * 117.51505 * 107.47871 * 20 19 18 34 34 H 1.07995 * 120.04270 * 180.27628 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1953 2.6662 -0.0005 5 6 1.5096 4.0106 -0.0011 6 6 2.8330 4.4130 -0.0005 7 6 3.8456 3.4714 -0.0052 8 6 5.2859 3.9150 -0.0114 9 1 5.9355 3.0399 -0.0149 10 6 5.5514 4.7422 -1.2429 11 1 5.3347 5.8003 -1.2397 12 6 6.0709 4.1483 -2.3735 13 7 6.3944 4.8851 -3.4138 14 14 6.3156 2.2972 -2.4276 15 1 5.0460 1.6417 -2.8324 16 1 7.3785 1.9669 -3.4106 17 1 6.7166 1.8113 -1.0829 18 6 5.5664 4.7540 1.2368 19 6 6.8390 4.4416 2.0267 20 6 5.4719 4.0544 2.5942 21 6 3.5388 2.1249 0.0010 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.1618 2.3526 -0.0002 26 1 0.7214 4.7488 -0.0019 27 1 3.0759 5.4654 -0.0005 28 1 6.7602 4.4673 -4.2090 29 1 5.2492 5.7955 1.1843 30 1 7.4765 3.6386 1.6568 31 1 7.3594 5.2777 2.4938 32 1 5.0929 4.6357 3.4347 33 1 5.2095 2.9965 2.5979 34 1 4.3301 1.3900 0.0018 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260207484.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:29 Heat of formation + Delta-G solvation = 24.655389 kcal Electronic energy + Delta-G solvation = -15741.938754 eV Core-core repulsion = 13344.643571 eV Total energy + Delta-G solvation = -2397.295184 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.35836 -38.09928 -34.98538 -33.11842 -31.82266 -30.29113 -28.94599 -25.20425 -23.87092 -23.15229 -22.66572 -20.79004 -19.08257 -18.13179 -17.15833 -16.73781 -16.18903 -15.84037 -15.32869 -15.05432 -14.70221 -14.64505 -14.50706 -13.98111 -13.74050 -13.43474 -13.20005 -12.86996 -12.44642 -12.37030 -12.26553 -12.05883 -11.80417 -11.38448 -11.13929 -10.92171 -10.77895 -10.51594 -10.48735 -9.52399 -8.33464 -8.32344 -6.33303 0.39177 0.57395 0.61837 1.26385 1.31711 1.34953 1.53948 2.28438 2.87236 2.97921 3.21807 3.91511 4.05601 4.08989 4.21452 4.27052 4.28801 4.30900 4.42203 4.59637 4.63577 4.79428 4.83690 4.86365 4.89678 5.08637 5.18346 5.22121 5.35286 5.38809 5.52050 5.56650 5.64814 5.92122 6.12780 6.32668 6.71569 7.30144 8.83358 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.018688 B = 0.008803 C = 0.007481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.929563 B = 3180.097667 C = 3742.071190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.172 6.172 3 C -0.089 4.089 4 C -0.152 4.152 5 C -0.099 4.099 6 C -0.120 4.120 7 C -0.031 4.031 8 C 0.066 3.934 9 H 0.038 0.962 10 C -0.489 4.489 11 H 0.044 0.956 12 C 0.023 3.977 13 N -0.943 5.943 14 Si 0.915 3.085 15 H -0.272 1.272 16 H -0.286 1.286 17 H -0.245 1.245 18 C -0.135 4.135 19 C -0.179 4.179 20 C -0.171 4.171 21 C -0.140 4.140 22 H 0.090 0.910 23 H 0.128 0.872 24 H 0.097 0.903 25 H 0.150 0.850 26 H 0.151 0.849 27 H 0.115 0.885 28 H 0.265 0.735 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.432 -7.433 10.301 17.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S 0.068 5.932 3 C -0.201 4.201 4 C -0.176 4.176 5 C -0.119 4.119 6 C -0.141 4.141 7 C -0.033 4.033 8 C 0.047 3.953 9 H 0.056 0.944 10 C -0.527 4.527 11 H 0.062 0.938 12 C -0.174 4.174 13 N -0.583 5.583 14 Si 0.741 3.259 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.169 1.169 18 C -0.153 4.153 19 C -0.216 4.216 20 C -0.208 4.208 21 C -0.163 4.163 22 H 0.109 0.891 23 H 0.146 0.854 24 H 0.115 0.885 25 H 0.167 0.833 26 H 0.168 0.832 27 H 0.133 0.867 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.101 0.899 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.716 -8.506 10.119 17.017 hybrid contribution -0.140 0.583 -0.780 0.984 sum -10.855 -7.923 9.339 16.366 Atomic orbital electron populations 1.23730 0.90729 1.08500 1.06584 1.85442 1.10903 1.03562 1.93275 1.21715 0.96311 0.96941 1.05116 1.21292 0.98542 0.92787 1.04939 1.21327 0.96245 0.95992 0.98309 1.21070 0.92749 0.99473 1.00763 1.20443 0.97629 0.92147 0.93124 1.17973 0.89310 0.95061 0.92929 0.94417 1.21051 1.40284 0.95233 0.96089 0.93760 1.25688 0.94892 1.01440 0.95425 1.70009 1.45292 1.37181 1.05787 0.86232 0.78429 0.82337 0.78922 1.19704 1.21223 1.16900 1.22146 1.02518 0.99250 0.91392 1.22971 0.90980 1.03483 1.04207 1.22936 1.00120 1.00842 0.96885 1.20639 0.94688 0.95569 1.05444 0.89126 0.85397 0.88450 0.83287 0.83154 0.86655 0.92597 0.89055 0.90116 0.87642 0.87387 0.89851 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 9.15 113.37 1.04 -1.12 16 2 S -0.17 -4.92 22.56 -56.49 -1.27 -6.20 16 3 C -0.09 -3.07 6.11 22.63 0.14 -2.93 16 4 C -0.15 -4.54 9.36 22.41 0.21 -4.33 16 5 C -0.10 -3.11 10.04 22.25 0.22 -2.89 16 6 C -0.12 -4.65 8.92 22.30 0.20 -4.45 16 7 C -0.03 -1.33 4.35 -19.89 -0.09 -1.42 16 8 C 0.07 3.07 1.67 -12.29 -0.02 3.05 16 9 H 0.04 1.81 4.67 -2.39 -0.01 1.80 16 10 C -0.49 -27.31 8.48 25.60 0.22 -27.09 16 11 H 0.04 2.70 8.06 -2.91 -0.02 2.68 16 12 C 0.02 1.36 5.47 84.65 0.46 1.83 16 13 N -0.94 -58.86 13.96 21.45 0.30 -58.56 16 14 Si 0.92 45.58 26.69 68.60 1.83 47.41 16 15 H -0.27 -13.56 7.11 99.48 0.71 -12.85 16 16 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 17 H -0.24 -11.36 6.06 99.48 0.60 -10.75 16 18 C -0.13 -5.31 4.70 -10.79 -0.05 -5.36 16 19 C -0.18 -6.13 10.18 30.60 0.31 -5.82 16 20 C -0.17 -5.47 10.01 30.60 0.31 -5.17 16 21 C -0.14 -5.70 8.83 22.41 0.20 -5.50 16 22 H 0.09 1.44 7.75 -2.39 -0.02 1.43 16 23 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.10 1.40 7.75 -2.39 -0.02 1.38 16 25 H 0.15 3.28 5.88 -2.91 -0.02 3.27 16 26 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 27 H 0.12 4.50 8.05 -2.91 -0.02 4.48 16 28 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 29 H 0.09 3.64 8.14 -2.39 -0.02 3.62 16 30 H 0.08 2.85 8.08 -2.39 -0.02 2.83 16 31 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 32 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.10 4.25 7.79 -2.91 -0.02 4.23 16 Total: -1.00 -66.07 295.86 4.97 -61.09 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.97 Total: 17.48 kcal Atomic # 6 Polarization: -64.37 SS G_CDS: 3.15 Total: -61.22 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.30 Total: -58.56 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.83 Total: 47.41 kcal Atomic # 16 Polarization: -4.92 SS G_CDS: -1.27 Total: -6.20 kcal Total: -66.07 4.97 -61.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260207484.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.749 kcal (2) G-P(sol) polarization free energy of solvation -66.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds