Wall clock time and date at job start Mon Mar 30 2020 05:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76200 * 103.00288 * 2 1 4 4 C 1.38993 * 120.07886 * 353.67485 * 3 2 1 5 5 C 1.38062 * 119.92193 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.96144 * 179.97438 * 5 4 3 7 7 C 1.50704 * 115.54918 * 293.40439 * 6 5 4 8 8 H 1.07999 * 119.99834 * 144.51603 * 7 6 5 9 9 C 1.37876 * 119.99891 * 324.51017 * 7 6 5 10 10 N 1.31517 * 119.99933 * 357.62585 * 9 7 6 11 11 Si 1.86802 * 119.99975 * 177.61909 * 9 7 6 12 12 H 1.48507 * 109.46860 * 90.00309 * 11 9 7 13 13 H 1.48501 * 109.47241 * 210.00330 * 11 9 7 14 14 H 1.48499 * 109.46862 * 330.00499 * 11 9 7 15 15 C 1.52995 * 117.50152 * 147.73368 * 6 5 4 16 16 C 1.52997 * 117.50076 * 79.07010 * 6 5 4 17 17 C 1.38322 * 120.07814 * 0.02562 * 5 4 3 18 18 C 1.38284 * 120.16118 * 359.97438 * 17 5 4 19 19 C 1.38102 * 120.07802 * 359.97438 * 18 17 5 20 20 C 1.50704 * 120.03751 * 179.97438 * 19 18 17 21 21 H 1.09001 * 109.46652 * 304.69891 * 1 2 3 22 22 H 1.08997 * 109.47157 * 64.69853 * 1 2 3 23 23 H 1.08997 * 109.47122 * 184.70182 * 1 2 3 24 24 H 1.08002 * 120.04189 * 359.74727 * 4 3 2 25 25 H 0.97007 * 119.99752 * 185.02079 * 10 9 7 26 26 H 1.09005 * 117.49797 * 359.97438 * 15 6 5 27 27 H 1.09001 * 117.50509 * 145.02036 * 15 6 5 28 28 H 1.09000 * 117.50625 * 214.98131 * 16 6 5 29 29 H 1.09004 * 117.49614 * 0.02562 * 16 6 5 30 30 H 1.08003 * 119.91777 * 179.97438 * 17 5 4 31 31 H 1.08001 * 119.95964 * 180.02562 * 18 17 5 32 32 H 1.09002 * 109.46859 * 270.02564 * 20 19 18 33 33 H 1.08999 * 109.47153 * 30.02541 * 20 19 18 34 34 H 1.08999 * 109.47035 * 150.02684 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.2024 2.6645 -0.1325 5 6 1.5167 4.0089 -0.1326 6 6 0.4246 5.0372 -0.2768 7 6 -0.2800 5.0547 -1.6089 8 1 -1.3363 5.2741 -1.6583 9 6 0.4240 4.7906 -2.7646 10 7 1.7193 4.5695 -2.7095 11 14 -0.4619 4.7466 -4.4086 12 1 -0.4560 6.1042 -5.0105 13 1 0.2298 3.7986 -5.3185 14 1 -1.8639 4.3021 -4.2035 15 6 0.6157 6.3759 0.4388 16 6 -0.4058 5.3649 0.9657 17 6 2.8331 4.4130 -0.0016 18 6 3.8386 3.4730 0.1304 19 6 3.5315 2.1266 0.1325 20 6 4.6281 1.1029 0.2758 21 1 -0.3633 0.5850 0.8449 22 1 -0.3633 0.4392 -0.9291 23 1 -0.3633 -1.0242 0.0842 24 1 0.1749 2.3496 -0.2398 25 1 2.2272 4.4560 -3.5282 26 1 1.5312 6.5127 1.0143 27 1 0.2315 7.2693 -0.0536 28 1 -1.4615 5.5935 0.8198 29 1 -0.1618 4.8369 1.8877 30 1 3.0761 5.4654 -0.0024 31 1 4.8653 3.7922 0.2329 32 1 5.0017 0.8300 -0.7112 33 1 5.4410 1.5218 0.8690 34 1 4.2348 0.2163 0.7733 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260208102.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:21 Heat of formation + Delta-G solvation = 38.592581 kcal Electronic energy + Delta-G solvation = -16038.542983 eV Core-core repulsion = 13641.852161 eV Total energy + Delta-G solvation = -2396.690822 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.65912 -36.05978 -32.17909 -31.58310 -30.33650 -28.33841 -26.36180 -25.41111 -22.22955 -21.19794 -20.85227 -19.27997 -17.07279 -15.57466 -15.08079 -14.67140 -14.56370 -13.89856 -13.57115 -13.54986 -13.27245 -12.98532 -12.82831 -11.97993 -11.79821 -11.66388 -11.29334 -11.08311 -10.99506 -10.92488 -10.47793 -10.35920 -10.34277 -9.87226 -9.34347 -9.18742 -8.90875 -8.74205 -8.32941 -7.47671 -6.72950 -5.99032 -4.14845 2.12590 2.27791 2.43924 2.99262 3.23659 3.32262 3.33652 4.32732 4.73750 4.95433 5.39456 5.46000 5.47716 5.60038 5.62276 5.91545 5.93618 6.00904 6.08846 6.22631 6.31956 6.40146 6.42269 6.49937 6.60941 6.78357 6.89126 6.93388 7.11316 7.23825 7.32349 7.48735 7.75757 7.86785 8.02551 8.30108 8.82092 9.45177 10.94673 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.018628 B = 0.009269 C = 0.008310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.741053 B = 3020.047281 C = 3368.730383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.150 6.150 3 C -0.089 4.089 4 C -0.113 4.113 5 C 0.060 3.940 6 C 0.078 3.922 7 C -0.497 4.497 8 H 0.062 0.938 9 C 0.074 3.926 10 N -0.860 5.860 11 Si 0.890 3.110 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.273 1.273 15 C -0.204 4.204 16 C -0.204 4.204 17 C -0.082 4.082 18 C -0.114 4.114 19 C -0.098 4.098 20 C -0.104 4.104 21 H 0.081 0.919 22 H 0.083 0.917 23 H 0.096 0.904 24 H 0.112 0.888 25 H 0.263 0.737 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.734 -5.506 5.429 7.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.090 5.910 3 C -0.201 4.201 4 C -0.136 4.136 5 C 0.058 3.942 6 C 0.077 3.923 7 C -0.534 4.534 8 H 0.081 0.919 9 C -0.131 4.131 10 N -0.495 5.495 11 Si 0.718 3.282 12 H -0.206 1.206 13 H -0.210 1.210 14 H -0.198 1.198 15 C -0.242 4.242 16 C -0.242 4.242 17 C -0.102 4.102 18 C -0.134 4.134 19 C -0.104 4.104 20 C -0.161 4.161 21 H 0.100 0.900 22 H 0.102 0.898 23 H 0.115 0.885 24 H 0.130 0.870 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.531 -6.679 5.296 8.892 hybrid contribution -1.264 1.318 -1.173 2.170 sum 1.267 -5.361 4.123 6.881 Atomic orbital electron populations 1.23586 0.95663 1.05729 1.05932 1.84814 1.05898 1.06350 1.93946 1.21182 0.96210 0.94401 1.08281 1.20700 0.97297 0.92805 1.02790 1.18886 0.93390 0.92355 0.89571 1.17832 0.93106 0.90251 0.91109 1.20456 0.95044 1.49232 0.88658 0.91948 1.24993 0.95044 0.94005 0.99053 1.69965 1.05750 1.46002 1.27774 0.86606 0.79876 0.77996 0.83735 1.20552 1.21043 1.19801 1.23064 0.98965 0.96087 1.06047 1.22926 0.96449 1.05980 0.98803 1.20753 0.92403 0.98499 0.98563 1.20661 0.98242 0.91985 1.02525 1.19123 0.92086 0.94341 1.04818 1.20648 0.96540 0.97516 1.01446 0.90028 0.89821 0.88491 0.86990 0.92688 0.91337 0.90195 0.90365 0.91275 0.87259 0.87373 0.91987 0.92269 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.17 101.05 0.93 -1.13 16 2 S -0.15 -2.58 20.77 -107.50 -2.23 -4.82 16 3 C -0.09 -1.83 6.11 -39.04 -0.24 -2.07 16 4 C -0.11 -2.54 8.96 -39.37 -0.35 -2.89 16 5 C 0.06 1.42 3.18 -104.66 -0.33 1.09 16 6 C 0.08 1.87 2.00 -156.81 -0.31 1.56 16 7 C -0.50 -13.16 8.99 -34.44 -0.31 -13.47 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.07 1.98 5.35 -17.82 -0.10 1.88 16 10 N -0.86 -23.48 10.91 55.43 0.60 -22.87 16 11 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 14 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 15 C -0.20 -4.47 9.42 -26.70 -0.25 -4.72 16 16 C -0.20 -4.33 9.94 -26.69 -0.27 -4.60 16 17 C -0.08 -1.83 8.45 -39.53 -0.33 -2.16 16 18 C -0.11 -2.29 9.70 -39.61 -0.38 -2.67 16 19 C -0.10 -1.93 5.90 -104.41 -0.62 -2.55 16 20 C -0.10 -1.66 9.57 36.01 0.34 -1.31 16 21 H 0.08 1.17 7.79 -51.92 -0.40 0.77 16 22 H 0.08 1.31 7.72 -51.93 -0.40 0.91 16 23 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 24 H 0.11 2.48 5.95 -52.49 -0.31 2.17 16 25 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 26 H 0.07 1.40 7.20 -51.93 -0.37 1.03 16 27 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 28 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 29 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 30 H 0.11 2.39 7.08 -52.48 -0.37 2.02 16 31 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 34 H 0.06 0.97 6.79 -51.93 -0.35 0.62 16 LS Contribution 294.77 15.07 4.44 4.44 Total: -1.00 -27.71 294.77 -9.15 -36.86 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -4.72 Total: 3.69 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: -2.22 Total: -33.04 kcal Atomic # 7 Polarization: -23.48 SS G_CDS: 0.60 Total: -22.87 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: -2.58 SS G_CDS: -2.23 Total: -4.82 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -27.71 -9.15 -36.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260208102.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.451 kcal (2) G-P(sol) polarization free energy of solvation -27.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds