Wall clock time and date at job start Mon Mar 30 2020 05:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76200 * 103.00288 * 2 1 4 4 C 1.38993 * 120.07886 * 353.67485 * 3 2 1 5 5 C 1.38062 * 119.92193 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.96144 * 179.97438 * 5 4 3 7 7 C 1.50704 * 115.54918 * 293.40439 * 6 5 4 8 8 H 1.07999 * 119.99834 * 144.51603 * 7 6 5 9 9 C 1.37876 * 119.99891 * 324.51017 * 7 6 5 10 10 N 1.31517 * 119.99933 * 357.62585 * 9 7 6 11 11 Si 1.86802 * 119.99975 * 177.61909 * 9 7 6 12 12 H 1.48507 * 109.46860 * 90.00309 * 11 9 7 13 13 H 1.48501 * 109.47241 * 210.00330 * 11 9 7 14 14 H 1.48499 * 109.46862 * 330.00499 * 11 9 7 15 15 C 1.52995 * 117.50152 * 147.73368 * 6 5 4 16 16 C 1.52997 * 117.50076 * 79.07010 * 6 5 4 17 17 C 1.38322 * 120.07814 * 0.02562 * 5 4 3 18 18 C 1.38284 * 120.16118 * 359.97438 * 17 5 4 19 19 C 1.38102 * 120.07802 * 359.97438 * 18 17 5 20 20 C 1.50704 * 120.03751 * 179.97438 * 19 18 17 21 21 H 1.09001 * 109.46652 * 304.69891 * 1 2 3 22 22 H 1.08997 * 109.47157 * 64.69853 * 1 2 3 23 23 H 1.08997 * 109.47122 * 184.70182 * 1 2 3 24 24 H 1.08002 * 120.04189 * 359.74727 * 4 3 2 25 25 H 0.97007 * 119.99752 * 185.02079 * 10 9 7 26 26 H 1.09005 * 117.49797 * 359.97438 * 15 6 5 27 27 H 1.09001 * 117.50509 * 145.02036 * 15 6 5 28 28 H 1.09000 * 117.50625 * 214.98131 * 16 6 5 29 29 H 1.09004 * 117.49614 * 0.02562 * 16 6 5 30 30 H 1.08003 * 119.91777 * 179.97438 * 17 5 4 31 31 H 1.08001 * 119.95964 * 180.02562 * 18 17 5 32 32 H 1.09002 * 109.46859 * 270.02564 * 20 19 18 33 33 H 1.08999 * 109.47153 * 30.02541 * 20 19 18 34 34 H 1.08999 * 109.47035 * 150.02684 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.2024 2.6645 -0.1325 5 6 1.5167 4.0089 -0.1326 6 6 0.4246 5.0372 -0.2768 7 6 -0.2800 5.0547 -1.6089 8 1 -1.3363 5.2741 -1.6583 9 6 0.4240 4.7906 -2.7646 10 7 1.7193 4.5695 -2.7095 11 14 -0.4619 4.7466 -4.4086 12 1 -0.4560 6.1042 -5.0105 13 1 0.2298 3.7986 -5.3185 14 1 -1.8639 4.3021 -4.2035 15 6 0.6157 6.3759 0.4388 16 6 -0.4058 5.3649 0.9657 17 6 2.8331 4.4130 -0.0016 18 6 3.8386 3.4730 0.1304 19 6 3.5315 2.1266 0.1325 20 6 4.6281 1.1029 0.2758 21 1 -0.3633 0.5850 0.8449 22 1 -0.3633 0.4392 -0.9291 23 1 -0.3633 -1.0242 0.0842 24 1 0.1749 2.3496 -0.2398 25 1 2.2272 4.4560 -3.5282 26 1 1.5312 6.5127 1.0143 27 1 0.2315 7.2693 -0.0536 28 1 -1.4615 5.5935 0.8198 29 1 -0.1618 4.8369 1.8877 30 1 3.0761 5.4654 -0.0024 31 1 4.8653 3.7922 0.2329 32 1 5.0017 0.8300 -0.7112 33 1 5.4410 1.5218 0.8690 34 1 4.2348 0.2163 0.7733 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260208102.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:20 Heat of formation + Delta-G solvation = 26.716919 kcal Electronic energy + Delta-G solvation = -16039.057950 eV Core-core repulsion = 13641.852161 eV Total energy + Delta-G solvation = -2397.205789 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.28375 -37.75088 -34.15816 -33.08309 -31.88598 -29.59360 -27.99536 -27.21231 -23.86856 -22.82069 -22.54248 -21.00809 -18.86446 -17.14031 -16.67749 -16.61304 -16.11314 -15.58421 -15.08266 -14.90488 -14.78231 -14.46502 -14.21004 -13.57225 -13.31921 -13.03635 -12.93066 -12.87655 -12.66605 -12.57469 -12.25350 -12.07762 -11.94445 -11.52622 -11.04060 -10.95995 -10.66815 -10.35839 -10.14876 -9.12955 -8.23400 -7.89326 -6.18661 0.65657 0.78795 0.84151 1.37502 1.40832 1.48350 1.60880 2.39488 3.02286 3.11151 3.64837 4.08366 4.16983 4.26207 4.30116 4.31198 4.51467 4.54615 4.68236 4.76301 4.81072 4.87712 4.90415 4.93203 5.06670 5.12418 5.19872 5.32528 5.51915 5.53600 5.67597 5.75197 5.85886 6.16618 6.38876 6.40604 6.81382 7.42314 8.93041 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.018628 B = 0.009269 C = 0.008310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.741053 B = 3020.047281 C = 3368.730383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.135 6.135 3 C -0.104 4.104 4 C -0.132 4.132 5 C 0.042 3.958 6 C 0.046 3.954 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.035 3.965 10 N -0.878 5.878 11 Si 0.943 3.057 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.270 1.270 15 C -0.199 4.199 16 C -0.187 4.187 17 C -0.102 4.102 18 C -0.115 4.115 19 C -0.106 4.106 20 C -0.099 4.099 21 H 0.082 0.918 22 H 0.070 0.930 23 H 0.131 0.869 24 H 0.104 0.896 25 H 0.258 0.742 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.136 0.864 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.165 -6.667 5.867 9.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.105 5.895 3 C -0.216 4.216 4 C -0.155 4.155 5 C 0.040 3.960 6 C 0.045 3.955 7 C -0.551 4.551 8 H 0.071 0.929 9 C -0.168 4.168 10 N -0.514 5.514 11 Si 0.770 3.230 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.195 1.195 15 C -0.236 4.236 16 C -0.224 4.224 17 C -0.122 4.122 18 C -0.134 4.134 19 C -0.111 4.111 20 C -0.156 4.156 21 H 0.101 0.899 22 H 0.089 0.911 23 H 0.149 0.851 24 H 0.122 0.878 25 H 0.067 0.933 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.154 0.846 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.951 -7.837 5.744 10.155 hybrid contribution -1.429 1.637 -1.270 2.516 sum 1.522 -6.200 4.475 7.796 Atomic orbital electron populations 1.23682 0.93831 1.07821 1.05327 1.84656 1.07905 1.03386 1.93549 1.21547 0.96446 0.96278 1.07301 1.20725 0.97531 0.93092 1.04194 1.18903 0.93649 0.92609 0.90837 1.17956 0.94593 0.91774 0.91165 1.20697 0.94844 1.49223 0.90290 0.92872 1.25567 0.95653 0.94003 1.01586 1.70107 1.06558 1.46876 1.27832 0.85777 0.78954 0.77861 0.80452 1.20183 1.21288 1.19463 1.23025 0.99770 0.95168 1.05674 1.22926 0.96390 1.04875 0.98191 1.20808 0.92701 0.98694 0.99970 1.20993 0.99101 0.92009 1.01307 1.19630 0.92884 0.95145 1.03478 1.20677 0.95951 0.96744 1.02260 0.89852 0.91123 0.85087 0.87787 0.93268 0.90125 0.90727 0.89918 0.89820 0.87958 0.84603 0.91479 0.89845 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 9.17 113.37 1.04 -2.79 16 2 S -0.14 -4.41 20.77 -56.49 -1.17 -5.58 16 3 C -0.10 -4.18 6.11 22.62 0.14 -4.05 16 4 C -0.13 -5.96 8.96 22.41 0.20 -5.76 16 5 C 0.04 2.00 3.18 -19.89 -0.06 1.94 16 6 C 0.05 2.22 2.00 -53.68 -0.11 2.12 16 7 C -0.51 -27.56 8.99 25.60 0.23 -27.33 16 8 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 9 C 0.03 1.87 5.35 84.65 0.45 2.32 16 10 N -0.88 -48.49 10.91 21.45 0.23 -48.26 16 11 Si 0.94 42.96 29.54 68.60 2.03 44.98 16 12 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 13 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 14 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 15 C -0.20 -8.70 9.42 30.62 0.29 -8.41 16 16 C -0.19 -7.84 9.94 30.62 0.30 -7.53 16 17 C -0.10 -4.52 8.45 22.30 0.19 -4.33 16 18 C -0.11 -4.45 9.70 22.25 0.22 -4.23 16 19 C -0.11 -3.99 5.90 -19.73 -0.12 -4.11 16 20 C -0.10 -2.88 9.57 71.24 0.68 -2.19 16 21 H 0.08 2.29 7.79 -2.39 -0.02 2.27 16 22 H 0.07 2.15 7.72 -2.39 -0.02 2.14 16 23 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 24 H 0.10 4.69 5.95 -2.91 -0.02 4.68 16 25 H 0.26 13.92 8.32 -92.70 -0.77 13.15 16 26 H 0.08 3.28 7.20 -2.38 -0.02 3.27 16 27 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16 28 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 29 H 0.08 3.23 8.14 -2.38 -0.02 3.21 16 30 H 0.10 4.54 7.08 -2.91 -0.02 4.52 16 31 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 32 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.08 2.00 8.09 -2.39 -0.02 1.98 16 34 H 0.07 1.94 6.79 -2.39 -0.02 1.92 16 Total: -1.00 -58.70 294.77 5.62 -53.08 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 1.08 Total: 20.15 kcal Atomic # 6 Polarization: -67.82 SS G_CDS: 3.45 Total: -64.36 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: 0.23 Total: -48.26 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: -4.41 SS G_CDS: -1.17 Total: -5.58 kcal Total: -58.70 5.62 -53.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260208102.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.796 kcal (2) G-P(sol) polarization free energy of solvation -58.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds