Wall clock time and date at job start Mon Mar 30 2020 05:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76195 * 103.00260 * 2 1 4 4 C 1.38994 * 120.07903 * 359.72823 * 3 2 1 5 5 C 1.38057 * 119.92059 * 179.69999 * 4 3 2 6 6 C 1.38323 * 120.07819 * 0.59587 * 5 4 3 7 7 C 1.50704 * 119.92164 * 179.70269 * 6 5 4 8 8 C 1.50706 * 115.55037 * 234.30741 * 7 6 5 9 9 H 1.07998 * 119.99369 * 263.13825 * 8 7 6 10 10 C 1.37874 * 119.99907 * 83.13781 * 8 7 6 11 11 N 1.31512 * 120.00449 * 353.05034 * 10 8 7 12 12 Si 1.86801 * 119.99524 * 173.05062 * 10 8 7 13 13 H 1.48510 * 109.47118 * 90.00261 * 12 10 8 14 14 H 1.48500 * 109.47242 * 209.99569 * 12 10 8 15 15 H 1.48495 * 109.47206 * 330.00081 * 12 10 8 16 16 C 1.52995 * 117.49937 * 88.63391 * 7 6 5 17 17 C 1.53000 * 117.49732 * 19.97172 * 7 6 5 18 18 C 1.38282 * 120.16388 * 359.67655 * 6 5 4 19 19 C 1.38111 * 120.07533 * 0.02562 * 18 6 5 20 20 C 1.50700 * 120.03851 * 180.02562 * 19 18 6 21 21 H 1.09003 * 109.46823 * 300.00082 * 1 2 3 22 22 H 1.08995 * 109.47057 * 59.99899 * 1 2 3 23 23 H 1.09000 * 109.47310 * 180.02562 * 1 2 3 24 24 H 1.08005 * 120.04218 * 359.97438 * 4 3 2 25 25 H 1.08000 * 119.96425 * 180.27296 * 5 4 3 26 26 H 0.96991 * 120.00282 * 175.02216 * 11 10 8 27 27 H 1.08998 * 117.50238 * 359.97438 * 16 7 6 28 28 H 1.09006 * 117.49827 * 145.02594 * 16 7 6 29 29 H 1.09002 * 117.50097 * 214.97850 * 17 7 6 30 30 H 1.09001 * 117.50289 * 0.02562 * 17 7 6 31 31 H 1.07997 * 119.96112 * 180.02562 * 18 6 5 32 32 H 1.08994 * 109.46846 * 269.97795 * 20 19 18 33 33 H 1.09006 * 109.46937 * 29.97700 * 20 19 18 34 34 H 1.08999 * 109.47223 * 149.97718 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1952 2.6662 -0.0057 5 6 1.5095 4.0105 0.0006 6 6 2.8329 4.4130 0.0001 7 6 3.1720 5.8814 0.0002 8 6 4.0907 6.3364 -1.1044 9 1 5.1502 6.4342 -0.9195 10 6 3.5785 6.6278 -2.3509 11 7 2.3148 6.3796 -2.6171 12 14 4.6798 7.3752 -3.6616 13 1 5.3167 6.2902 -4.4507 14 1 3.8664 8.2306 -4.5628 15 1 5.7318 8.1989 -3.0135 16 6 3.3000 6.5768 1.3569 17 6 2.0883 6.8566 0.4643 18 6 3.8456 3.4714 0.0001 19 6 3.5386 2.1248 0.0000 20 6 4.6429 1.0994 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 0.1617 2.3526 -0.0106 25 1 0.7213 4.7487 0.0006 26 1 1.9362 6.6503 -3.4680 27 1 3.1385 5.9724 2.2495 28 1 4.0484 7.3638 1.4506 29 1 2.0401 7.8275 -0.0289 30 1 1.1302 6.4362 0.7700 31 1 4.8777 3.7893 0.0001 32 1 4.9093 0.8518 -1.0270 33 1 5.5147 1.5045 0.5144 34 1 4.3035 0.2001 0.5146 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260232504.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:23 Heat of formation + Delta-G solvation = 37.073884 kcal Electronic energy + Delta-G solvation = -15707.088693 eV Core-core repulsion = 13310.332015 eV Total energy + Delta-G solvation = -2396.756677 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.81864 -36.07373 -32.22118 -31.88701 -30.21357 -28.58454 -26.34362 -25.59243 -22.56566 -21.60151 -20.60273 -18.88512 -16.92065 -16.38295 -15.17331 -14.66549 -14.52927 -13.93730 -13.87056 -13.76544 -13.24318 -13.05639 -12.62622 -12.30024 -11.96123 -11.72981 -11.52225 -11.18170 -11.08040 -10.97362 -10.53941 -10.47649 -10.26089 -9.83007 -9.54320 -9.43968 -8.64317 -8.47237 -8.15566 -7.99382 -6.78314 -6.07310 -4.15423 1.89958 2.04986 2.16143 2.78457 3.26950 3.34496 3.37236 4.36450 4.49694 5.15474 5.18312 5.20528 5.29521 5.40272 5.50280 5.69417 5.76806 6.01206 6.03017 6.12395 6.16700 6.31346 6.36193 6.47332 6.65367 6.69790 6.77751 6.94505 6.99825 7.08971 7.37913 7.45525 7.67722 7.80954 7.87482 8.35161 8.85223 9.50686 11.00208 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.025448 B = 0.006776 C = 0.006469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.010916 B = 4131.111722 C = 4326.978389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.142 6.142 3 C -0.113 4.113 4 C -0.132 4.132 5 C -0.101 4.101 6 C 0.014 3.986 7 C 0.069 3.931 8 C -0.495 4.495 9 H 0.062 0.938 10 C 0.075 3.925 11 N -0.869 5.869 12 Si 0.888 3.112 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.273 1.273 16 C -0.200 4.200 17 C -0.160 4.160 18 C -0.094 4.094 19 C -0.075 4.075 20 C -0.108 4.108 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.099 0.901 24 H 0.110 0.890 25 H 0.119 0.881 26 H 0.260 0.740 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.122 0.878 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.083 -8.831 5.189 10.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.098 5.902 3 C -0.225 4.225 4 C -0.155 4.155 5 C -0.121 4.121 6 C 0.012 3.988 7 C 0.068 3.932 8 C -0.532 4.532 9 H 0.080 0.920 10 C -0.130 4.130 11 N -0.504 5.504 12 Si 0.715 3.285 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.198 1.198 16 C -0.237 4.237 17 C -0.197 4.197 18 C -0.114 4.114 19 C -0.080 4.080 20 C -0.166 4.166 21 H 0.098 0.902 22 H 0.099 0.901 23 H 0.118 0.882 24 H 0.128 0.872 25 H 0.137 0.863 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.140 0.860 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.588 -9.922 5.011 11.228 hybrid contribution -0.552 1.641 -0.978 1.988 sum -2.140 -8.281 4.033 9.456 Atomic orbital electron populations 1.23593 0.96103 1.06049 1.05409 1.84982 1.05327 1.05847 1.94048 1.21160 0.96094 0.94615 1.10594 1.20948 0.97023 0.93487 1.04044 1.20936 0.97050 0.94136 0.99933 1.19821 0.91649 0.96010 0.91364 1.17703 0.97912 0.85657 0.91898 1.20353 0.93201 1.45958 0.93671 0.91972 1.24965 0.95232 0.94954 0.97817 1.70027 1.12753 1.43999 1.23632 0.86670 0.80755 0.79336 0.81719 1.20577 1.21132 1.19754 1.23023 1.02107 1.04200 0.94356 1.22626 0.91732 1.02075 1.03275 1.20753 0.99772 0.90598 1.00267 1.19402 0.92003 0.94715 1.01851 1.20708 0.96559 0.97193 1.02092 0.90221 0.90077 0.88243 0.87208 0.86273 0.93001 0.91498 0.90060 0.89929 0.91538 0.85977 0.91415 0.91611 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.15 101.05 0.92 -0.75 16 2 S -0.14 -2.15 20.77 -107.50 -2.23 -4.38 16 3 C -0.11 -2.10 6.11 -39.04 -0.24 -2.34 16 4 C -0.13 -2.52 9.36 -39.37 -0.37 -2.89 16 5 C -0.10 -2.17 9.29 -39.62 -0.37 -2.54 16 6 C 0.01 0.32 5.25 -104.57 -0.55 -0.23 16 7 C 0.07 1.66 1.58 -156.81 -0.25 1.41 16 8 C -0.49 -13.14 8.54 -34.44 -0.29 -13.44 16 9 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 10 C 0.07 2.01 5.40 -17.82 -0.10 1.92 16 11 N -0.87 -24.20 13.03 55.43 0.72 -23.48 16 12 Si 0.89 20.83 29.55 -169.99 -5.02 15.81 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 16 C -0.20 -4.27 9.94 -26.69 -0.27 -4.53 16 17 C -0.16 -3.64 9.12 -26.69 -0.24 -3.88 16 18 C -0.09 -2.02 9.09 -39.61 -0.36 -2.38 16 19 C -0.07 -1.43 5.90 -104.41 -0.62 -2.05 16 20 C -0.11 -1.69 9.57 36.01 0.34 -1.35 16 21 H 0.08 0.89 7.76 -51.92 -0.40 0.49 16 22 H 0.08 0.96 7.74 -51.93 -0.40 0.56 16 23 H 0.10 0.92 8.14 -51.92 -0.42 0.50 16 24 H 0.11 1.80 5.88 -52.48 -0.31 1.49 16 25 H 0.12 2.55 6.41 -52.49 -0.34 2.21 16 26 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 27 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 29 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 30 H 0.07 1.42 6.56 -51.93 -0.34 1.08 16 31 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 34 H 0.06 0.93 6.79 -51.93 -0.35 0.58 16 LS Contribution 297.10 15.07 4.48 4.48 Total: -1.00 -28.17 297.10 -9.08 -37.25 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -4.64 Total: 3.36 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: -2.38 Total: -33.04 kcal Atomic # 7 Polarization: -24.20 SS G_CDS: 0.72 Total: -23.48 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: -2.15 SS G_CDS: -2.23 Total: -4.38 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.17 -9.08 -37.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260232504.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.327 kcal (2) G-P(sol) polarization free energy of solvation -28.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds