Wall clock time and date at job start Mon Mar 30 2020 05:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76195 * 103.00260 * 2 1 4 4 C 1.38994 * 120.07903 * 359.72823 * 3 2 1 5 5 C 1.38057 * 119.92059 * 179.69999 * 4 3 2 6 6 C 1.38323 * 120.07819 * 0.59587 * 5 4 3 7 7 C 1.50704 * 119.92164 * 179.70269 * 6 5 4 8 8 C 1.50706 * 115.55037 * 234.30741 * 7 6 5 9 9 H 1.07998 * 119.99369 * 263.13825 * 8 7 6 10 10 C 1.37874 * 119.99907 * 83.13781 * 8 7 6 11 11 N 1.31512 * 120.00449 * 353.05034 * 10 8 7 12 12 Si 1.86801 * 119.99524 * 173.05062 * 10 8 7 13 13 H 1.48510 * 109.47118 * 90.00261 * 12 10 8 14 14 H 1.48500 * 109.47242 * 209.99569 * 12 10 8 15 15 H 1.48495 * 109.47206 * 330.00081 * 12 10 8 16 16 C 1.52995 * 117.49937 * 88.63391 * 7 6 5 17 17 C 1.53000 * 117.49732 * 19.97172 * 7 6 5 18 18 C 1.38282 * 120.16388 * 359.67655 * 6 5 4 19 19 C 1.38111 * 120.07533 * 0.02562 * 18 6 5 20 20 C 1.50700 * 120.03851 * 180.02562 * 19 18 6 21 21 H 1.09003 * 109.46823 * 300.00082 * 1 2 3 22 22 H 1.08995 * 109.47057 * 59.99899 * 1 2 3 23 23 H 1.09000 * 109.47310 * 180.02562 * 1 2 3 24 24 H 1.08005 * 120.04218 * 359.97438 * 4 3 2 25 25 H 1.08000 * 119.96425 * 180.27296 * 5 4 3 26 26 H 0.96991 * 120.00282 * 175.02216 * 11 10 8 27 27 H 1.08998 * 117.50238 * 359.97438 * 16 7 6 28 28 H 1.09006 * 117.49827 * 145.02594 * 16 7 6 29 29 H 1.09002 * 117.50097 * 214.97850 * 17 7 6 30 30 H 1.09001 * 117.50289 * 0.02562 * 17 7 6 31 31 H 1.07997 * 119.96112 * 180.02562 * 18 6 5 32 32 H 1.08994 * 109.46846 * 269.97795 * 20 19 18 33 33 H 1.09006 * 109.46937 * 29.97700 * 20 19 18 34 34 H 1.08999 * 109.47223 * 149.97718 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1952 2.6662 -0.0057 5 6 1.5095 4.0105 0.0006 6 6 2.8329 4.4130 0.0001 7 6 3.1720 5.8814 0.0002 8 6 4.0907 6.3364 -1.1044 9 1 5.1502 6.4342 -0.9195 10 6 3.5785 6.6278 -2.3509 11 7 2.3148 6.3796 -2.6171 12 14 4.6798 7.3752 -3.6616 13 1 5.3167 6.2902 -4.4507 14 1 3.8664 8.2306 -4.5628 15 1 5.7318 8.1989 -3.0135 16 6 3.3000 6.5768 1.3569 17 6 2.0883 6.8566 0.4643 18 6 3.8456 3.4714 0.0001 19 6 3.5386 2.1248 0.0000 20 6 4.6429 1.0994 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 0.1617 2.3526 -0.0106 25 1 0.7213 4.7487 0.0006 26 1 1.9362 6.6503 -3.4680 27 1 3.1385 5.9724 2.2495 28 1 4.0484 7.3638 1.4506 29 1 2.0401 7.8275 -0.0289 30 1 1.1302 6.4362 0.7700 31 1 4.8777 3.7893 0.0001 32 1 4.9093 0.8518 -1.0270 33 1 5.5147 1.5045 0.5144 34 1 4.3035 0.2001 0.5146 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260232504.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:23 Heat of formation + Delta-G solvation = 24.565468 kcal Electronic energy + Delta-G solvation = -15707.631098 eV Core-core repulsion = 13310.332015 eV Total energy + Delta-G solvation = -2397.299083 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.39880 -37.78606 -34.07224 -33.48220 -31.71422 -29.62760 -27.84849 -27.47244 -24.19009 -23.28633 -22.24289 -20.62652 -18.35033 -18.22931 -16.70420 -16.48471 -16.17120 -15.38200 -15.30758 -15.02233 -14.79516 -14.23051 -14.09216 -13.75682 -13.47297 -13.10425 -12.94025 -12.93077 -12.87751 -12.65130 -12.30881 -12.07813 -11.99767 -11.43717 -11.17925 -10.99234 -10.46939 -10.34128 -9.83302 -9.52587 -8.19805 -8.02428 -6.23058 0.50207 0.59862 0.72972 1.39716 1.42015 1.51030 1.59302 2.41803 2.89623 3.18755 3.53694 4.00453 4.01571 4.19078 4.29220 4.33146 4.49220 4.56842 4.59850 4.68353 4.75197 4.81432 4.89881 4.93644 4.97979 5.14094 5.17837 5.25838 5.39616 5.52501 5.59827 5.69653 5.84013 6.05270 6.24305 6.41030 6.81809 7.44914 8.96427 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.025448 B = 0.006776 C = 0.006469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.010916 B = 4131.111722 C = 4326.978389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.133 6.133 3 C -0.122 4.122 4 C -0.132 4.132 5 C -0.119 4.119 6 C -0.012 4.012 7 C 0.044 3.956 8 C -0.507 4.507 9 H 0.055 0.945 10 C 0.030 3.970 11 N -0.896 5.896 12 Si 0.944 3.056 13 H -0.280 1.280 14 H -0.283 1.283 15 H -0.267 1.267 16 C -0.180 4.180 17 C -0.161 4.161 18 C -0.113 4.113 19 C -0.080 4.080 20 C -0.105 4.105 21 H 0.088 0.912 22 H 0.081 0.919 23 H 0.129 0.871 24 H 0.136 0.864 25 H 0.111 0.889 26 H 0.258 0.742 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.117 0.883 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.303 -10.623 5.511 12.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.107 5.893 3 C -0.233 4.233 4 C -0.155 4.155 5 C -0.139 4.139 6 C -0.014 4.014 7 C 0.044 3.956 8 C -0.545 4.545 9 H 0.073 0.927 10 C -0.171 4.171 11 N -0.533 5.533 12 Si 0.770 3.230 13 H -0.206 1.206 14 H -0.209 1.209 15 H -0.191 1.191 16 C -0.217 4.217 17 C -0.199 4.199 18 C -0.132 4.132 19 C -0.085 4.085 20 C -0.161 4.161 21 H 0.107 0.893 22 H 0.100 0.900 23 H 0.147 0.853 24 H 0.154 0.846 25 H 0.129 0.871 26 H 0.067 0.933 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.135 0.865 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.796 -11.716 5.345 13.002 hybrid contribution -0.533 2.081 -1.032 2.383 sum -2.329 -9.636 4.313 10.811 Atomic orbital electron populations 1.23757 0.93072 1.08205 1.05894 1.84930 1.08607 1.02209 1.93532 1.21548 0.95851 0.97128 1.08801 1.21215 0.98637 0.92606 1.02998 1.20954 0.96350 0.95310 1.01252 1.19784 0.92707 0.95416 0.93478 1.17796 0.98320 0.86891 0.92622 1.20629 0.93321 1.45775 0.94730 0.92729 1.25615 0.96358 0.95537 0.99588 1.70134 1.14066 1.45125 1.23942 0.85780 0.79273 0.78544 0.79378 1.20619 1.20889 1.19123 1.23026 1.00967 1.03658 0.94042 1.22523 0.92607 1.00890 1.03849 1.20822 0.99243 0.91694 1.01469 1.19789 0.93577 0.94572 1.00600 1.20744 0.95895 0.96710 1.02795 0.89338 0.89991 0.85252 0.84590 0.87113 0.93280 0.89593 0.89741 0.91909 0.90508 0.86542 0.90860 0.90359 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.15 113.37 1.04 -1.74 16 2 S -0.13 -3.63 20.77 -56.49 -1.17 -4.80 16 3 C -0.12 -4.32 6.11 22.62 0.14 -4.18 16 4 C -0.13 -4.86 9.36 22.41 0.21 -4.65 16 5 C -0.12 -5.14 9.29 22.25 0.21 -4.94 16 6 C -0.01 -0.54 5.25 -19.83 -0.10 -0.64 16 7 C 0.04 2.17 1.58 -53.67 -0.08 2.08 16 8 C -0.51 -27.48 8.54 25.60 0.22 -27.26 16 9 H 0.05 2.94 7.82 -2.91 -0.02 2.92 16 10 C 0.03 1.66 5.40 84.65 0.46 2.12 16 11 N -0.90 -50.90 13.03 21.45 0.28 -50.62 16 12 Si 0.94 43.29 29.55 68.60 2.03 45.31 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 14 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 15 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 16 C -0.18 -7.68 9.94 30.62 0.30 -7.38 16 17 C -0.16 -7.49 9.12 30.62 0.28 -7.21 16 18 C -0.11 -4.85 9.09 22.25 0.20 -4.65 16 19 C -0.08 -3.00 5.90 -19.72 -0.12 -3.11 16 20 C -0.10 -3.07 9.57 71.24 0.68 -2.39 16 21 H 0.09 1.64 7.76 -2.39 -0.02 1.62 16 22 H 0.08 1.65 7.74 -2.39 -0.02 1.64 16 23 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.14 4.16 5.88 -2.91 -0.02 4.14 16 25 H 0.11 4.83 6.41 -2.91 -0.02 4.81 16 26 H 0.26 14.11 8.32 -92.72 -0.77 13.34 16 27 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 28 H 0.08 3.50 8.14 -2.38 -0.02 3.48 16 29 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 30 H 0.08 3.33 6.56 -2.39 -0.02 3.32 16 31 H 0.12 4.96 8.06 -2.91 -0.02 4.93 16 32 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.08 2.07 8.09 -2.38 -0.02 2.05 16 34 H 0.08 2.06 6.79 -2.39 -0.02 2.04 16 Total: -1.00 -60.41 297.10 5.65 -54.76 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 1.08 Total: 19.28 kcal Atomic # 6 Polarization: -67.37 SS G_CDS: 3.43 Total: -63.94 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 0.28 Total: -50.62 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.17 Total: -4.80 kcal Total: -60.41 5.65 -54.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260232504.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.329 kcal (2) G-P(sol) polarization free energy of solvation -60.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds